Non-Coding RNA Search

Cow genome map


           Conread name:
           Ova1-OVRM10125H10
        

               Conread position:
               1-113
               

               Cow position:
               chr11:19508131-19508243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-121
               

               Cow position:
               chr11:25165278-25165399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               99
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               1-153
               

               Cow position:
               chr11:47850862-47851012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               77, 108
               

               Conread position:
               1-174
               

               Cow position:
               chr11:17968741-17968576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-180
               

               Cow position:
               chr11:4412179-4412010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1-195
               

               Cow position:
               chr11:955201-955394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               1-198
               

               Cow position:
               chr11:42793137-42792943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               160
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               1-203
               

               Cow position:
               chr11:65430896-65431089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               1-231
               

               Cow position:
               chr11:38874568-38874339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               36, 114
               

               Conread position:
               1-237
               

               Cow position:
               chr11:10620487-10620259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               132, 22
               

               Conread position:
               1-239
               

               Cow position:
               chr11:30912154-30911933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               1-255
               

               Cow position:
               chr11:33341310-33341058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               1-255
               

               Cow position:
               chr11:35874156-35873916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               127, 81
               

               Conread position:
               1-256
               

               Cow position:
               chr11:45898217-45897961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               162, 105
               

               Conread position:
               1-261
               

               Cow position:
               chr11:2092175-2092426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               129, 55
               

               Conread position:
               1-262
               

               Cow position:
               chr11:50778209-50778461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               1-262
               

               Cow position:
               chr11:64090248-64090003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1-268
               

               Cow position:
               chr11:76114490-76114741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               1-272
               

               Cow position:
               chr11:16342404-16342124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               1-276
               

               Cow position:
               chr11:30954834-30955107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 116
               

               Conread position:
               1-276
               

               Cow position:
               chr11:48272033-48272307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 147
               

               Conread position:
               1-276
               

               Cow position:
               chr11:59702322-59702598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 76
               

               Conread position:
               1-276
               

               Cow position:
               chr11:69119138-69119401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 48
               

               Conread position:
               1-276
               

               Cow position:
               chr11:73924724-73924454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 54
               

               Conread position:
               1-281
               

               Cow position:
               chr11:66425052-66424766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               204
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               48, 153
               

               Conread position:
               1-303
               

               Cow position:
               chr11:44234189-44234488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 48
               

               Conread position:
               1-315
               

               Cow position:
               chr11:3393373-3393066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 18
               

               Conread position:
               1-318
               

               Cow position:
               chr11:68207003-68206695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               135, 77
               

               Conread position:
               1-335
               

               Cow position:
               chr11:8525275-8524947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 124
               

               Conread position:
               1-337
               

               Cow position:
               chr11:14470205-14470534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               27, 97
               

               Conread position:
               1-339
               

               Cow position:
               chr11:17083462-17083138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 35
               

               Conread position:
               1-346
               

               Cow position:
               chr11:1849326-1848983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               243
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               229, 68
               

               Conread position:
               1-346
               

               Cow position:
               chr11:24601809-24602141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               253
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               215, 91
               

               Conread position:
               1-346
               

               Cow position:
               chr11:30192008-30192360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 128
               

               Conread position:
               1-346
               

               Cow position:
               chr11:45646759-45646416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 146
               

               Conread position:
               1-347
               

               Cow position:
               chr11:41019-41353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 59
               

               Conread position:
               1-347
               

               Cow position:
               chr11:10992116-10992441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               12, 109
               

               Conread position:
               1-348
               

               Cow position:
               chr11:11469799-11469473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               1-348
               

               Cow position:
               chr11:11558003-11558352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 148
               

               Conread position:
               1-348
               

               Cow position:
               chr11:20761682-20762036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 115
               

               Conread position:
               1-348
               

               Cow position:
               chr11:27405230-27404887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 55
               

               Conread position:
               1-348
               

               Cow position:
               chr11:27746760-27747102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 110
               

               Conread position:
               1-348
               

               Cow position:
               chr11:35153989-35153636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 116
               

               Conread position:
               1-348
               

               Cow position:
               chr11:40818804-40818449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 147
               

               Conread position:
               1-348
               

               Cow position:
               chr11:65157576-65157221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               59, 147
               

               Conread position:
               1-348
               

               Cow position:
               chr11:67600618-67600962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               237
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               316, 146
               

               Conread position:
               1-348
               

               Cow position:
               chr11:71493022-71492680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               18, 96
               

               Conread position:
               1-348
               

               Cow position:
               chr11:83043528-83043183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 115
               

               Conread position:
               1-348
               

               Cow position:
               chr11:83323411-83323761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               230, 25
               

               Conread position:
               1-349
               

               Cow position:
               chr11:952107-952471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               131, 48
               

               Conread position:
               1-351
               

               Cow position:
               chr11:52297385-52297036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 136
               

               Conread position:
               1-351
               

               Cow position:
               chr11:80556056-80556405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 140
               

               Conread position:
               1-352
               

               Cow position:
               chr11:41986209-41985860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               244
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               36, 60
               

               Conread position:
               1-353
               

               Cow position:
               chr11:1625382-1625033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               256, 55
               

               Conread position:
               1-353
               

               Cow position:
               chr11:34646427-34646784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 63
               

               Conread position:
               1-358
               

               Cow position:
               chr11:50152980-50152620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 144
               

               Conread position:
               1-360
               

               Cow position:
               chr11:65762764-65762389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 350
               

               Conread position:
               1-360
               

               Cow position:
               chr11:81135326-81134972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 15
               

               Conread position:
               1-361
               

               Cow position:
               chr11:2083972-2084344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               34, 119
               

               Conread position:
               1-361
               

               Cow position:
               chr11:44031838-44032202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 76
               

               Conread position:
               1-361
               

               Cow position:
               chr11:62239582-62239938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 76
               

               Conread position:
               1-364
               

               Cow position:
               chr11:47899115-47899450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 114
               

               Conread position:
               1-364
               

               Cow position:
               chr11:48295868-48296224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 61
               

               Conread position:
               1-364
               

               Cow position:
               chr11:75874916-75874572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               259
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               129, 98
               

               Conread position:
               1-367
               

               Cow position:
               chr11:15285779-15285420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 56
               

               Conread position:
               1-367
               

               Cow position:
               chr11:80923488-80923122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 147
               

               Conread position:
               1-369
               

               Cow position:
               chr11:30830780-30830418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 115
               

               Conread position:
               1-370
               

               Cow position:
               chr11:19500944-19500600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               320, 82
               

               Conread position:
               1-372
               

               Cow position:
               chr11:2907683-2907326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 116
               

               Conread position:
               1-382
               

               Cow position:
               chr11:46329336-46329713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               31, 41
               

               Conread position:
               2-237
               

               Cow position:
               chr11:60143462-60143233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               30, 13
               

               Conread position:
               2-252
               

               Cow position:
               chr11:70619889-70620128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               20, 48
               

               Conread position:
               2-361
               

               Cow position:
               chr11:2917749-2917395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 124
               

               Conread position:
               3-207
               

               Cow position:
               chr11:57170991-57170791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               3-224
               

               Cow position:
               chr11:18588740-18588530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               61, 32
               

               Conread position:
               3-246
               

               Cow position:
               chr11:5305-5541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               3-264
               

               Cow position:
               chr11:41271979-41272234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               136, 46
               

               Conread position:
               3-264
               

               Cow position:
               chr11:64904834-64905094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 112
               

               Conread position:
               3-281
               

               Cow position:
               chr11:48496749-48496481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               208
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               162, 16
               

               Conread position:
               3-343
               

               Cow position:
               chr11:72375848-72375487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               46, 57
               

               Conread position:
               3-347
               

               Cow position:
               chr11:36194131-36194477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               29, 91
               

               Conread position:
               3-347
               

               Cow position:
               chr11:42291995-42291657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               283, 91
               

               Conread position:
               3-350
               

               Cow position:
               chr11:27248330-27248674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 125
               

               Conread position:
               3-350
               

               Cow position:
               chr11:37804717-37804365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               237
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               34, 67
               

               Conread position:
               3-351
               

               Cow position:
               chr11:83397737-83398094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 123
               

               Conread position:
               3-353
               

               Cow position:
               chr11:35580095-35580450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 114
               

               Conread position:
               3-359
               

               Cow position:
               chr11:63434218-63433872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               318, 105
               

               Conread position:
               3-361
               

               Cow position:
               chr11:17889889-17889528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               32, 85
               

               Conread position:
               3-361
               

               Cow position:
               chr11:48672542-48672914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               33, 133
               

               Conread position:
               3-366
               

               Cow position:
               chr11:7873985-7874342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               3-369
               

               Cow position:
               chr11:19487640-19487274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               34, 50
               

               Conread position:
               4-188
               

               Cow position:
               chr11:8936646-8936472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               128, 66
               

               Conread position:
               4-196
               

               Cow position:
               chr11:85986332-85986144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               4-197
               

               Cow position:
               chr11:75355449-75355649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               109, 83
               

               Conread position:
               4-203
               

               Cow position:
               chr11:8339567-8339371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               131, 51
               

               Conread position:
               4-203
               

               Cow position:
               chr11:18591593-18591399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               4-207
               

               Cow position:
               chr11:48042201-48041994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               33, 127
               

               Conread position:
               4-215
               

               Cow position:
               chr11:20684738-20684525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               27, 127
               

               Conread position:
               4-221
               

               Cow position:
               chr11:30120827-30120609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               109, 178
               

               Conread position:
               4-224
               

               Cow position:
               chr11:61859058-61858847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               28, 56
               

               Conread position:
               4-229
               

               Cow position:
               chr11:42358958-42359175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               110, 31
               

               Conread position:
               4-231
               

               Cow position:
               chr11:24937503-24937728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               4-238
               

               Cow position:
               chr11:40479016-40478783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               24, 65
               

               Conread position:
               4-238
               

               Cow position:
               chr11:64638695-64638456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               27, 157
               

               Conread position:
               4-240
               

               Cow position:
               chr11:67550534-67550306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               4-255
               

               Cow position:
               chr11:3833513-3833277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               4-255
               

               Cow position:
               chr11:42044149-42043910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               126, 42
               

               Conread position:
               4-263
               

               Cow position:
               chr11:8428335-8428608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               26, 126
               

               Conread position:
               4-264
               

               Cow position:
               chr11:1362639-1362372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               30, 152
               

               Conread position:
               4-264
               

               Cow position:
               chr11:11232616-11232360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               126, 99
               

               Conread position:
               4-264
               

               Cow position:
               chr11:73512593-73512348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               4-267
               

               Cow position:
               chr11:9221885-9221634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               110, 50
               

               Conread position:
               4-267
               

               Cow position:
               chr11:77128498-77128759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               110, 31
               

               Conread position:
               4-268
               

               Cow position:
               chr11:8148058-8147799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               4-268
               

               Cow position:
               chr11:23138223-23137955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               35, 149
               

               Conread position:
               4-268
               

               Cow position:
               chr11:34032364-34032100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               33, 111
               

               Conread position:
               4-271
               

               Cow position:
               chr11:47544969-47545238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 145
               

               Conread position:
               4-275
               

               Cow position:
               chr11:7590032-7590296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               244, 110
               

               Conread position:
               4-276
               

               Cow position:
               chr11:16907204-16906944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               4-276
               

               Cow position:
               chr11:38577935-38577672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               27, 77
               

               Conread position:
               4-276
               

               Cow position:
               chr11:62225825-62226096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               147, 76
               

               Conread position:
               4-277
               

               Cow position:
               chr11:34829941-34829676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               111, 19
               

               Conread position:
               4-277
               

               Cow position:
               chr11:44036557-44036829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               48, 128
               

               Conread position:
               4-277
               

               Cow position:
               chr11:44636919-44636647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 147
               

               Conread position:
               4-281
               

               Cow position:
               chr11:62155463-62155752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               27, 153
               

               Conread position:
               4-283
               

               Cow position:
               chr11:63482588-63482317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               33, 117
               

               Conread position:
               4-284
               

               Cow position:
               chr11:35684656-35684385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 110
               

               Conread position:
               4-284
               

               Cow position:
               chr11:61958908-61958630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               30, 96
               

               Conread position:
               4-284
               

               Cow position:
               chr11:67747123-67747394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               204
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               4-284
               

               Cow position:
               chr11:83230552-83230288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               4-289
               

               Cow position:
               chr11:2932991-2933266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               24, 52
               

               Conread position:
               4-298
               

               Cow position:
               chr11:377807-377512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               27, 145
               

               Conread position:
               4-300
               

               Cow position:
               chr11:70086163-70086461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               27, 60
               

               Conread position:
               4-305
               

               Cow position:
               chr11:32436170-32436476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               27, 54
               

               Conread position:
               4-311
               

               Cow position:
               chr11:23586476-23586784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               226
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               45, 54
               

               Conread position:
               4-318
               

               Cow position:
               chr11:8988389-8988085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               75, 33
               

               Conread position:
               4-330
               

               Cow position:
               chr11:81406320-81406001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               203, 124
               

               Conread position:
               4-331
               

               Cow position:
               chr11:34121039-34121362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 80
               

               Conread position:
               4-332
               

               Cow position:
               chr11:55761718-55762025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               317, 35
               

               Conread position:
               4-334
               

               Cow position:
               chr11:83066333-83066662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               237
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               102, 113
               

               Conread position:
               4-335
               

               Cow position:
               chr11:42296779-42296456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 115
               

               Conread position:
               4-336
               

               Cow position:
               chr11:13043307-13042976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               4-336
               

               Cow position:
               chr11:48474541-48474881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               38, 111
               

               Conread position:
               4-337
               

               Cow position:
               chr11:30639107-30638779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               33, 59
               

               Conread position:
               4-337
               

               Cow position:
               chr11:87155356-87155690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               226
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               34, 110
               

               Conread position:
               4-340
               

               Cow position:
               chr11:45872481-45872134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               32, 111
               

               Conread position:
               4-345
               

               Cow position:
               chr11:77705599-77705930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               45, 28
               

               Conread position:
               4-346
               

               Cow position:
               chr11:4207151-4207493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               102, 72
               

               Conread position:
               4-347
               

               Cow position:
               chr11:62620222-62620559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 61
               

               Conread position:
               4-348
               

               Cow position:
               chr11:15016880-15017242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               4-348
               

               Cow position:
               chr11:15632718-15632376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               241
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               67, 75
               

               Conread position:
               4-348
               

               Cow position:
               chr11:22978026-22977699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               244, 45
               

               Conread position:
               4-348
               

               Cow position:
               chr11:25620558-25620206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               33, 53
               

               Conread position:
               4-348
               

               Cow position:
               chr11:29960144-29960475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 38
               

               Conread position:
               4-348
               

               Cow position:
               chr11:42083316-42083637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               188, 42
               

               Conread position:
               4-348
               

               Cow position:
               chr11:68905235-68904905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               316, 31
               

               Conread position:
               4-348
               

               Cow position:
               chr11:85723538-85723878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               31, 106
               

               Conread position:
               4-350
               

               Cow position:
               chr11:15338913-15339242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               343, 10
               

               Conread position:
               4-350
               

               Cow position:
               chr11:15772881-15772527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               29, 130
               

               Conread position:
               4-350
               

               Cow position:
               chr11:64044080-64044403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               315, 121
               

               Conread position:
               4-350
               

               Cow position:
               chr11:66572663-66572306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               33, 146
               

               Conread position:
               4-352
               

               Cow position:
               chr11:9270889-9270550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               32, 131
               

               Conread position:
               4-352
               

               Cow position:
               chr11:10095185-10095531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               27, 52
               

               Conread position:
               4-352
               

               Cow position:
               chr11:30354908-30355233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               107, 43
               

               Conread position:
               4-355
               

               Cow position:
               chr11:21728430-21728099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               112, 77
               

               Conread position:
               4-355
               

               Cow position:
               chr11:41215580-41215924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               244
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               33, 111
               

               Conread position:
               4-358
               

               Cow position:
               chr11:8545174-8544824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               33, 56
               

               Conread position:
               4-358
               

               Cow position:
               chr11:17860316-17859959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               34, 104
               

               Conread position:
               4-358
               

               Cow position:
               chr11:36286535-36286897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               33, 5
               

               Conread position:
               4-359
               

               Cow position:
               chr11:65607852-65607491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               158, 110
               

               Conread position:
               4-360
               

               Cow position:
               chr11:84385799-84385443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               246
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               33, 113
               

               Conread position:
               4-361
               

               Cow position:
               chr11:13499851-13500208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               16, 103
               

               Conread position:
               4-361
               

               Cow position:
               chr11:15503942-15504309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               32, 152
               

               Conread position:
               4-361
               

               Cow position:
               chr11:17278827-17278485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               32, 75
               

               Conread position:
               4-361
               

               Cow position:
               chr11:31413291-31413653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               32, 112
               

               Conread position:
               4-361
               

               Cow position:
               chr11:39462459-39462817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               244
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               9, 43
               

               Conread position:
               4-361
               

               Cow position:
               chr11:42016797-42016442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               27, 109
               

               Conread position:
               4-361
               

               Cow position:
               chr11:46748025-46747667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               239
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               121, 81
               

               Conread position:
               4-361
               

               Cow position:
               chr11:55333750-55334115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               254, 110
               

               Conread position:
               4-361
               

               Cow position:
               chr11:62490272-62490618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 38
               

               Conread position:
               4-361
               

               Cow position:
               chr11:65826900-65826557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               285, 15
               

               Conread position:
               4-361
               

               Cow position:
               chr11:77745417-77745050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               33, 11
               

               Conread position:
               4-361
               

               Cow position:
               chr11:79728831-79728476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               33, 111
               

               Conread position:
               4-361
               

               Cow position:
               chr11:80756945-80756591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               27, 104
               

               Conread position:
               4-362
               

               Cow position:
               chr11:13592575-13592934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               33, 54
               

               Conread position:
               4-362
               

               Cow position:
               chr11:74316551-74316903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               315, 111
               

               Conread position:
               4-363
               

               Cow position:
               chr11:20238510-20238875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 144
               

               Conread position:
               4-364
               

               Cow position:
               chr11:53778453-53778820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               249
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               33, 120
               

               Conread position:
               4-366
               

               Cow position:
               chr11:33348347-33347997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               248
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               33, 111
               

               Conread position:
               4-370
               

               Cow position:
               chr11:36112260-36112616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               50, 114
               

               Conread position:
               4-371
               

               Cow position:
               chr11:11125501-11125874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 117
               

               Conread position:
               5-183
               

               Cow position:
               chr11:25319893-25320071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               125, 143
               

               Conread position:
               5-238
               

               Cow position:
               chr11:44642447-44642221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               44, 64
               

               Conread position:
               5-261
               

               Cow position:
               chr11:65409315-65409064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               102, 123
               

               Conread position:
               5-276
               

               Cow position:
               chr11:36658978-36658717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               5-283
               

               Cow position:
               chr11:3233923-3234189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 89
               

               Conread position:
               5-303
               

               Cow position:
               chr11:59872771-59873059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               212, 127
               

               Conread position:
               5-335
               

               Cow position:
               chr11:77319252-77319583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 142
               

               Conread position:
               5-347
               

               Cow position:
               chr11:52381034-52380689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 144
               

               Conread position:
               5-355
               

               Cow position:
               chr11:17660934-17661253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               314, 80
               

               Conread position:
               5-358
               

               Cow position:
               chr11:26535618-26535978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               109, 31
               

               Conread position:
               5-361
               

               Cow position:
               chr11:36058644-36058997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               132, 30
               

               Conread position:
               5-364
               

               Cow position:
               chr11:45434926-45435277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 74
               

               Conread position:
               5-367
               

               Cow position:
               chr11:48544276-48544637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 77
               

               Conread position:
               6-185
               

               Cow position:
               chr11:59156038-59155861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               100, 88
               

               Conread position:
               6-238
               

               Cow position:
               chr11:35775179-35775407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               6-255
               

               Cow position:
               chr11:10213721-10213482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               190
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               6-272
               

               Cow position:
               chr11:2576063-2575799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               194
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               106, 89
               

               Conread position:
               6-273
               

               Cow position:
               chr11:45631921-45631662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               6-276
               

               Cow position:
               chr11:71501295-71501025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               25, 112
               

               Conread position:
               6-280
               

               Cow position:
               chr11:36238624-36238888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               6-343
               

               Cow position:
               chr11:21844292-21843960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 78
               

               Conread position:
               6-348
               

               Cow position:
               chr11:6234039-6233694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               25, 41
               

               Conread position:
               6-353
               

               Cow position:
               chr11:82940781-82940441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               243
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               31, 58
               

               Conread position:
               6-357
               

               Cow position:
               chr11:259332-258980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 120
               

               Conread position:
               6-359
               

               Cow position:
               chr11:11646910-11647293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 145
               

               Conread position:
               6-360
               

               Cow position:
               chr11:64029417-64029073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               242, 40
               

               Conread position:
               6-361
               

               Cow position:
               chr11:55052727-55053060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               6-361
               

               Cow position:
               chr11:71390723-71390379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 142
               

               Conread position:
               6-363
               

               Cow position:
               chr11:6245162-6245521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               28, 120
               

               Conread position:
               6-364
               

               Cow position:
               chr11:3175531-3175870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 65
               

               Conread position:
               6-369
               

               Cow position:
               chr11:19592154-19591791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               254
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               24, 111
               

               Conread position:
               6-371
               

               Cow position:
               chr11:76889889-76890247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               31, 92
               

               Conread position:
               7-207
               

               Cow position:
               chr11:14094581-14094381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               35, 27
               

               Conread position:
               7-238
               

               Cow position:
               chr11:52983517-52983745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               8, 108
               

               Conread position:
               7-239
               

               Cow position:
               chr11:82796444-82796218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               7-275
               

               Cow position:
               chr11:1071250-1070985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               131, 27
               

               Conread position:
               7-284
               

               Cow position:
               chr11:40573492-40573215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 122
               

               Conread position:
               7-348
               

               Cow position:
               chr11:4663204-4662879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               7-348
               

               Cow position:
               chr11:64334699-64335014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               247
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               197, 49
               

               Conread position:
               7-352
               

               Cow position:
               chr11:66188479-66188133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               107, 48
               

               Conread position:
               7-359
               

               Cow position:
               chr11:13061388-13061058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 79
               

               Conread position:
               8-188
               

               Cow position:
               chr11:16251404-16251224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               146
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               122, 144
               

               Conread position:
               8-255
               

               Cow position:
               chr11:53553079-53553302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               8-263
               

               Cow position:
               chr11:21852461-21852207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               8-267
               

               Cow position:
               chr11:13075948-13075714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               8-267
               

               Cow position:
               chr11:18572644-18572898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               50, 46
               

               Conread position:
               8-267
               

               Cow position:
               chr11:23128700-23128442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 144
               

               Conread position:
               8-275
               

               Cow position:
               chr11:43897983-43898244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               195
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               8-276
               

               Cow position:
               chr11:63847692-63847951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               8-277
               

               Cow position:
               chr11:62151042-62150786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               8-298
               

               Cow position:
               chr11:40792862-40792576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               110, 32
               

               Conread position:
               8-320
               

               Cow position:
               chr11:39499201-39499508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 55
               

               Conread position:
               8-320
               

               Cow position:
               chr11:81162590-81162294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               121, 43
               

               Conread position:
               8-343
               

               Cow position:
               chr11:51729131-51729453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               311, 64
               

               Conread position:
               8-347
               

               Cow position:
               chr11:55494522-55494847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 78
               

               Conread position:
               8-360
               

               Cow position:
               chr11:78381212-78380874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               29, 52
               

               Conread position:
               8-361
               

               Cow position:
               chr11:36182529-36182889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 108
               

               Conread position:
               8-361
               

               Cow position:
               chr11:39115336-39115669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 137
               

               Conread position:
               8-361
               

               Cow position:
               chr11:80820156-80819827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               247
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               343, 77
               

               Conread position:
               8-371
               

               Cow position:
               chr11:46580198-46580557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 105
               

               Conread position:
               9-265
               

               Cow position:
               chr11:86720567-86720322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               9-284
               

               Cow position:
               chr11:25386907-25387182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 139
               

               Conread position:
               9-348
               

               Cow position:
               chr11:38638964-38639283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               305, 11
               

               Conread position:
               9-348
               

               Cow position:
               chr11:49152795-49153124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               23, 51
               

               Conread position:
               9-361
               

               Cow position:
               chr11:2925444-2925112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 62
               

               Conread position:
               9-366
               

               Cow position:
               chr11:2874232-2874604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               23, 106
               

               Conread position:
               9-366
               

               Cow position:
               chr11:44222734-44223083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 59
               

               Conread position:
               9-371
               

               Cow position:
               chr11:32126454-32126822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               243
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               28, 66
               

               Conread position:
               10-332
               

               Cow position:
               chr11:18851763-18852071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 84
               

               Conread position:
               12-167
               

               Cow position:
               chr11:70741129-70740978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               12-276
               

               Cow position:
               chr11:70278262-70278006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               22, 49
               

               Conread position:
               12-327
               

               Cow position:
               chr11:56187466-56187765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               12-332
               

               Cow position:
               chr11:63435364-63435690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 137
               

               Conread position:
               12-335
               

               Cow position:
               chr11:28993885-28993577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               234
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               305, 102
               

               Conread position:
               12-347
               

               Cow position:
               chr11:5201803-5201463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               37, 105
               

               Conread position:
               13-276
               

               Cow position:
               chr11:44575885-44575646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               126, 11
               

               Conread position:
               13-276
               

               Cow position:
               chr11:69075756-69076017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 133
               

               Conread position:
               13-346
               

               Cow position:
               chr11:6400223-6399882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               19, 109
               

               Conread position:
               13-360
               

               Cow position:
               chr11:32254371-32254021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               243
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               18, 47
               

               Conread position:
               13-364
               

               Cow position:
               chr11:5961161-5961504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               32, 41
               

               Conread position:
               14-354
               

               Cow position:
               chr11:17493327-17493673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 68
               

               Conread position:
               14-361
               

               Cow position:
               chr11:35347906-35347555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               18, 110
               

               Conread position:
               14-366
               

               Cow position:
               chr11:42884929-42884584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               233
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               18, 77
               

               Conread position:
               15-188
               

               Cow position:
               chr11:50197586-50197413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               65, 103
               

               Conread position:
               15-304
               

               Cow position:
               chr11:33414083-33414375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               16, 93
               

               Conread position:
               15-358
               

               Cow position:
               chr11:17227796-17227458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               74, 64
               

               Conread position:
               16-276
               

               Cow position:
               chr11:28643935-28644194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               112, 132
               

               Conread position:
               16-335
               

               Cow position:
               chr11:53462793-53463113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               16, 100
               

               Conread position:
               16-348
               

               Cow position:
               chr11:32055334-32055001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               221
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               16, 120
               

               Conread position:
               16-352
               

               Cow position:
               chr11:5485860-5486204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               16, 111
               

               Conread position:
               16-358
               

               Cow position:
               chr11:68841052-68841406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 105
               

               Conread position:
               16-361
               

               Cow position:
               chr11:18706967-18706637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               79, 94
               

               Conread position:
               16-367
               

               Cow position:
               chr11:62663370-62663044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               300, 81
               

               Conread position:
               17-336
               

               Cow position:
               chr11:64009570-64009898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               16, 98
               

               Conread position:
               17-360
               

               Cow position:
               chr11:23407313-23407654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 131
               

               Conread position:
               18-348
               

               Cow position:
               chr11:49057255-49057567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               97, 109
               

               Conread position:
               19-190
               

               Cow position:
               chr11:33825037-33824866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               99, 129
               

               Conread position:
               19-336
               

               Cow position:
               chr11:68112409-68112087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               13, 23
               

               Conread position:
               19-367
               

               Cow position:
               chr11:53773530-53773886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               246
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               13, 147
               

               Conread position:
               19-374
               

               Cow position:
               chr11:30165363-30165720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               16, 90
               

               Conread position:
               20-361
               

               Cow position:
               chr11:37974779-37975116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               17, 96
               

               Conread position:
               21-361
               

               Cow position:
               chr11:5433121-5433463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               10, 22
               

               Conread position:
               23-348
               

               Cow position:
               chr11:47639172-47638840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               9, 128
               

               Conread position:
               24-220
               

               Cow position:
               chr11:16540721-16540914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               24-265
               

               Cow position:
               chr11:65767056-65767295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               25-229
               

               Cow position:
               chr11:16262166-16261964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               10, 15
               

               Conread position:
               25-349
               

               Cow position:
               chr11:50472176-50472503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               40, 10
               

               Conread position:
               25-350
               

               Cow position:
               chr11:66041131-66041459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               7, 220
               

               Conread position:
               26-330
               

               Cow position:
               chr11:47772531-47772216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 32
               

               Conread position:
               26-359
               

               Cow position:
               chr11:67615382-67615059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 29
               

               Conread position:
               26-361
               

               Cow position:
               chr11:69977838-69978162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               26-371
               

               Cow position:
               chr11:40395298-40395645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               6, 67
               

               Conread position:
               27-346
               

               Cow position:
               chr11:48659793-48660112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               97, 121
               

               Conread position:
               27-359
               

               Cow position:
               chr11:52690661-52690329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               231
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               9, 89
               

               Conread position:
               30-322
               

               Cow position:
               chr11:80537351-80537627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               84, 33
               

               Conread position:
               30-359
               

               Cow position:
               chr11:62788993-62789321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 86
               

               Conread position:
               30-361
               

               Cow position:
               chr11:68913007-68913340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               77, 99
               

               Conread position:
               31-359
               

               Cow position:
               chr11:35981278-35980946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               123, 53
               

               Conread position:
               31-360
               

               Cow position:
               chr11:26117853-26117542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               219
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               319, 28
               

               Conread position:
               34-276
               

               Cow position:
               chr11:21497390-21497630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               61, 83
               

               Conread position:
               35-348
               

               Cow position:
               chr11:67615059-67614741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 119
               

               Conread position:
               36-276
               

               Cow position:
               chr11:41293948-41293711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 91
               

               Conread position:
               41-265
               

               Cow position:
               chr11:6194081-6194302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               41-345
               

               Cow position:
               chr11:40608721-40608412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 106
               

               Conread position:
               41-350
               

               Cow position:
               chr11:49873012-49872701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 107
               

               Conread position:
               41-364
               

               Cow position:
               chr11:63035300-63034967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               84, 24
               

               Conread position:
               42-275
               

               Cow position:
               chr11:33345320-33345551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               49-361
               

               Cow position:
               chr11:63221223-63221530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               129, 67
               

               Conread position:
               50-348
               

               Cow position:
               chr11:30493884-30494172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               51-238
               

               Cow position:
               chr11:75965765-75965582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               13, 65
               

               Conread position:
               51-343
               

               Cow position:
               chr11:80413125-80412830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               111, 11
               

               Conread position:
               52-350
               

               Cow position:
               chr11:261376-261071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               233, 59
               

               Conread position:
               56-264
               

               Cow position:
               chr11:14466598-14466392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               57-283
               

               Cow position:
               chr11:26845703-26845477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               208, 64
               

               Conread position:
               57-348
               

               Cow position:
               chr11:31227860-31228137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               57-348
               

               Cow position:
               chr11:46923005-46922703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 17
               

               Conread position:
               57-361
               

               Cow position:
               chr11:29308472-29308780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               67, 29
               

               Conread position:
               58-240
               

               Cow position:
               chr11:69392450-69392634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               31, 62
               

               Conread position:
               58-354
               

               Cow position:
               chr11:30808709-30808405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               52, 75
               

               Conread position:
               59-255
               

               Cow position:
               chr11:249591-249395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               62, 89
               

               Conread position:
               59-276
               

               Cow position:
               chr11:18587714-18587489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               58, 98
               

               Conread position:
               59-276
               

               Cow position:
               chr11:54334227-54334435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               59-276
               

               Cow position:
               chr11:63920155-63919947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               59-276
               

               Cow position:
               chr11:83033343-83033133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               59-337
               

               Cow position:
               chr11:17036636-17036359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 90
               

               Conread position:
               59-340
               

               Cow position:
               chr11:26275063-26274790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               262, 69
               

               Conread position:
               59-348
               

               Cow position:
               chr11:375348-375643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               40, 91
               

               Conread position:
               59-348
               

               Cow position:
               chr11:6194301-6194572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               262, 55
               

               Conread position:
               59-352
               

               Cow position:
               chr11:27719429-27719151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               31, 67
               

               Conread position:
               59-361
               

               Cow position:
               chr11:8584214-8584509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               52, 93
               

               Conread position:
               59-361
               

               Cow position:
               chr11:75285874-75285560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               94, 184
               

               Conread position:
               59-367
               

               Cow position:
               chr11:42066754-42067067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               226
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               70, 18
               

               Conread position:
               60-236
               

               Cow position:
               chr11:11045139-11044965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               60-283
               

               Cow position:
               chr11:4653083-4652859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               55, 90
               

               Conread position:
               61-361
               

               Cow position:
               chr11:48085811-48086114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 87
               

               Conread position:
               61-361
               

               Cow position:
               chr11:55911739-55911448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 55
               

               Conread position:
               63-239
               

               Cow position:
               chr11:84490592-84490429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               63-265
               

               Cow position:
               chr11:31506742-31506946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               35, 53
               

               Conread position:
               63-332
               

               Cow position:
               chr11:14875880-14875600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               106, 84
               

               Conread position:
               63-348
               

               Cow position:
               chr11:43360885-43360603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               50, 65
               

               Conread position:
               63-361
               

               Cow position:
               chr11:5217569-5217264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               56, 83
               

               Conread position:
               63-361
               

               Cow position:
               chr11:16314770-16315072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               220, 44
               

               Conread position:
               63-361
               

               Cow position:
               chr11:62742736-62742454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               254, 29
               

               Conread position:
               63-361
               

               Cow position:
               chr11:63999192-63998894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 86
               

               Conread position:
               64-366
               

               Cow position:
               chr11:39060702-39060404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 59
               

               Conread position:
               65-268
               

               Cow position:
               chr11:22499464-22499266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               189, 38
               

               Conread position:
               65-268
               

               Cow position:
               chr11:32691064-32690872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               57, 14
               

               Conread position:
               65-348
               

               Cow position:
               chr11:55744371-55744653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               204, 49
               

               Conread position:
               65-362
               

               Cow position:
               chr11:82740408-82740690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               66-359
               

               Cow position:
               chr11:53816759-53817049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               203, 32
               

               Conread position:
               67-343
               

               Cow position:
               chr11:42160159-42159883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 87
               

               Conread position:
               67-348
               

               Cow position:
               chr11:83032583-83032861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 46
               

               Conread position:
               68-262
               

               Cow position:
               chr11:64406128-64406322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 61
               

               Conread position:
               68-320
               

               Cow position:
               chr11:30370010-30370255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               68-330
               

               Cow position:
               chr11:24599487-24599232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               47, 82
               

               Conread position:
               69-348
               

               Cow position:
               chr11:17676467-17676191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 44
               

               Conread position:
               70-359
               

               Cow position:
               chr11:62813045-62812758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 16
               

               Conread position:
               71-342
               

               Cow position:
               chr11:80564198-80564475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               208
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               59, 45
               

               Conread position:
               73-206
               

               Cow position:
               chr11:37369587-37369718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               6, 39
               

               Conread position:
               73-364
               

               Cow position:
               chr11:8437782-8437488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 42
               

               Conread position:
               75-281
               

               Cow position:
               chr11:35803043-35803248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               142, 72
               

               Conread position:
               75-346
               

               Cow position:
               chr11:41603780-41603519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               39, 76
               

               Conread position:
               75-348
               

               Cow position:
               chr11:35536497-35536759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               191, 40
               

               Conread position:
               76-349
               

               Cow position:
               chr11:3715146-3715424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               93, 71
               

               Conread position:
               77-332
               

               Cow position:
               chr11:35926995-35926741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               199, 70
               

               Conread position:
               79-358
               

               Cow position:
               chr11:33409347-33409073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 34
               

               Conread position:
               79-362
               

               Cow position:
               chr11:72870814-72871095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               84, 45
               

               Conread position:
               80-330
               

               Cow position:
               chr11:18910964-18910718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               50, 36
               

               Conread position:
               80-354
               

               Cow position:
               chr11:47724817-47725079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               235, 67
               

               Conread position:
               82-211
               

               Cow position:
               chr11:1779413-1779286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               48, 34
               

               Conread position:
               82-275
               

               Cow position:
               chr11:53279798-53279607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 66
               

               Conread position:
               83-224
               

               Cow position:
               chr11:54218634-54218770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               83-360
               

               Cow position:
               chr11:63866737-63866466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 30
               

               Conread position:
               84-319
               

               Cow position:
               chr11:31410965-31410728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 69
               

               Conread position:
               86-255
               

               Cow position:
               chr11:28168504-28168336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               86-360
               

               Cow position:
               chr11:17721884-17721605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 64
               

               Conread position:
               87-349
               

               Cow position:
               chr11:72292464-72292746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               22, 70
               

               Conread position:
               89-335
               

               Cow position:
               chr11:4637250-4637004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 60
               

               Conread position:
               89-344
               

               Cow position:
               chr11:30867104-30867357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               41, 59
               

               Conread position:
               94-263
               

               Cow position:
               chr11:30483845-30484015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               25, 54
               

               Conread position:
               94-361
               

               Cow position:
               chr11:64104925-64105192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               36, 54
               

               Conread position:
               97-283
               

               Cow position:
               chr11:10363457-10363271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               37, 18
               

               Conread position:
               97-332
               

               Cow position:
               chr11:48248285-48248045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               151, 19
               

               Conread position:
               100-276
               

               Cow position:
               chr11:19606512-19606685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               169, 26
               

               Conread position:
               102-369
               

               Cow position:
               chr11:25119997-25119731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               197
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               14, 46
               

               Conread position:
               103-354
               

               Cow position:
               chr11:1932556-1932298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               106, 46
               

               Conread position:
               105-361
               

               Cow position:
               chr11:67312717-67312983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               10, 50
               

               Conread position:
               106-276
               

               Cow position:
               chr11:82731060-82730891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               13, 42
               

               Conread position:
               107-360
               

               Cow position:
               chr11:78820096-78820345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               214, 19
               

               Conread position:
               108-359
               

               Cow position:
               chr11:30964285-30964537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               10, 42
               

               Conread position:
               109-365
               

               Cow position:
               chr11:18447548-18447300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               212, 17
               

               Conread position:
               112-368
               

               Cow position:
               chr11:80639605-80639352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               62, 37
               

               Conread position:
               113-272
               

               Cow position:
               chr11:34413395-34413237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               27, 37
               

               Conread position:
               113-276
               

               Cow position:
               chr11:36329089-36328931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               113-361
               

               Cow position:
               chr11:72884648-72884417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               114-262
               

               Cow position:
               chr11:16843037-16842892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               115-236
               

               Cow position:
               chr11:36914780-36914659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               25, 35
               

               Conread position:
               120-348
               

               Cow position:
               chr11:897625-897848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               12, 28
               

               Conread position:
               121-335
               

               Cow position:
               chr11:35109584-35109369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               80, 26
               

               Conread position:
               121-355
               

               Cow position:
               chr11:18924699-18924938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               36, 43
               

               Conread position:
               126-360
               

               Cow position:
               chr11:18914983-18915205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               6, 116
               

               Conread position:
               126-364
               

               Cow position:
               chr11:37425187-37424948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               189, 9
               

               Conread position:
               127-342
               

               Cow position:
               chr11:85271778-85271567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               199, 20
               

               Conread position:
               127-347
               

               Cow position:
               chr11:21885793-21886013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 19
               

               Conread position:
               127-364
               

               Cow position:
               chr11:56311636-56311400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               191, 27
               

               Conread position:
               128-345
               

               Cow position:
               chr11:38211606-38211822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               167, 13
               

               Conread position:
               131-277
               

               Cow position:
               chr11:47882767-47882912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               131-362
               

               Cow position:
               chr11:4225061-4225284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               188, 16
               

               Conread position:
               133-361
               

               Cow position:
               chr11:35669986-35669768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               216, 14
               

               Conread position:
               135-350
               

               Cow position:
               chr11:15382535-15382309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               176
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               104, 14
               

               Conread position:
               135-361
               

               Cow position:
               chr11:3896731-3896502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               135, 12
               

               Conread position:
               135-369
               

               Cow position:
               chr11:30895036-30894797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               113, 12
               

               Conread position:
               136-366
               

               Cow position:
               chr11:49255373-49255613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               142, 13
               

               Conread position:
               137-342
               

               Cow position:
               chr11:64408946-64409144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               182, 10
               

               Conread position:
               137-344
               

               Cow position:
               chr11:62889924-62889712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               146, 10
               

               Conread position:
               137-348
               

               Cow position:
               chr11:46427438-46427223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               132, 10
               

               Conread position:
               139-360
               

               Cow position:
               chr11:30843047-30842830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               178, 8
               

               Conread position:
               140-360
               

               Cow position:
               chr11:20205879-20205663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               177, 11
               

               Conread position:
               141-335
               

               Cow position:
               chr11:34467545-34467733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               178, 7
               

               Conread position:
               142-359
               

               Cow position:
               chr11:63165673-63165456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               169
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               177, 105
               

               Conread position:
               148-368
               

               Cow position:
               chr11:48315417-48315195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               171, 97
               

               Conread position:
               149-353
               

               Cow position:
               chr11:47784755-47784969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               149-359
               

               Cow position:
               chr11:17517379-17517595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               120, 92
               

               Conread position:
               149-359
               

               Cow position:
               chr11:44619936-44620149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               121, 19
               

               Conread position:
               149-360
               

               Cow position:
               chr11:71021981-71022197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               113, 147
               

               Conread position:
               149-361
               

               Cow position:
               chr11:56114919-56115133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 111
               

               Conread position:
               149-365
               

               Cow position:
               chr11:84764017-84764222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               195, 31
               

               Conread position:
               150-352
               

               Cow position:
               chr11:46784456-46784652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               169, 47
               

               Conread position:
               151-389
               

               Cow position:
               chr11:2484813-2484570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               16, 45
               

               Conread position:
               152-350
               

               Cow position:
               chr11:77241688-77241888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               16, 35
               

               Conread position:
               154-344
               

               Cow position:
               chr11:9699259-9699075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               165, 113
               

               Conread position:
               154-348
               

               Cow position:
               chr11:63478363-63478546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               167, 51
               

               Conread position:
               154-361
               

               Cow position:
               chr11:905397-905202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               155-360
               

               Cow position:
               chr11:30986628-30986831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               163
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               164, 35
               

               Conread position:
               156-325
               

               Cow position:
               chr11:73977316-73977140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               156-361
               

               Cow position:
               chr11:37100181-37099976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               121, 31
               

               Conread position:
               156-365
               

               Cow position:
               chr11:15366985-15366774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               163, 82
               

               Conread position:
               157-345
               

               Cow position:
               chr11:6256014-6255828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               159, 21
               

               Conread position:
               159-371
               

               Cow position:
               chr11:41980214-41979992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               111, 100
               

               Conread position:
               160-349
               

               Cow position:
               chr11:22884405-22884590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               155, 27
               

               Conread position:
               161-361
               

               Cow position:
               chr11:49210829-49210623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               115, 187
               

               Conread position:
               163-347
               

               Cow position:
               chr11:66685911-66685727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 109
               

               Conread position:
               163-359
               

               Cow position:
               chr11:76248044-76248239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               113, 78
               

               Conread position:
               164-357
               

               Cow position:
               chr11:63499131-63498937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               109, 16
               

               Conread position:
               164-358
               

               Cow position:
               chr11:27502706-27502509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               118, 77
               

               Conread position:
               164-359
               

               Cow position:
               chr11:17309405-17309595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               76, 19
               

               Conread position:
               164-366
               

               Cow position:
               chr11:5264092-5264295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               108, 77
               

               Conread position:
               165-361
               

               Cow position:
               chr11:23278970-23278767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               7, 95
               

               Conread position:
               165-361
               

               Cow position:
               chr11:42206418-42206613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               154
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               170-360
               

               Cow position:
               chr11:80008066-80007867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               101, 64
               

               Conread position:
               173-368
               

               Cow position:
               chr11:26442500-26442299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               96, 65
               

               Conread position:
               176-337
               

               Cow position:
               chr11:15279005-15278845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               176-374
               

               Cow position:
               chr11:5176369-5176175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               143, 90
               

               Conread position:
               177-343
               

               Cow position:
               chr11:29782174-29782336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               142, 54
               

               Conread position:
               177-348
               

               Cow position:
               chr11:80296844-80296675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               178-402
               

               Cow position:
               chr11:13684701-13684483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               141, 78
               

               Conread position:
               179-359
               

               Cow position:
               chr11:30485662-30485852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               179-359
               

               Cow position:
               chr11:33369160-33369347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               8, 82
               

               Conread position:
               179-364
               

               Cow position:
               chr11:36104323-36104506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               179-370
               

               Cow position:
               chr11:69676342-69676150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               25, 73
               

               Conread position:
               180-319
               

               Cow position:
               chr11:4411857-4411721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               180-361
               

               Cow position:
               chr11:4621419-4621240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               139, 67
               

               Conread position:
               180-361
               

               Cow position:
               chr11:7652055-7651868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               90, 57
               

               Conread position:
               181-359
               

               Cow position:
               chr11:63201266-63201451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               90, 98
               

               Conread position:
               181-360
               

               Cow position:
               chr11:62606428-62606613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               10, 79
               

               Conread position:
               183-350
               

               Cow position:
               chr11:25721980-25721819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               137, 23
               

               Conread position:
               183-350
               

               Cow position:
               chr11:74839625-74839789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               183-352
               

               Cow position:
               chr11:30857052-30857223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               54, 65
               

               Conread position:
               183-358
               

               Cow position:
               chr11:54872745-54872567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               47, 31
               

               Conread position:
               183-360
               

               Cow position:
               chr11:44615153-44614971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               37, 79
               

               Conread position:
               183-361
               

               Cow position:
               chr11:15591460-15591283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               136, 87
               

               Conread position:
               183-361
               

               Cow position:
               chr11:53651655-53651836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               87, 74
               

               Conread position:
               183-363
               

               Cow position:
               chr11:37041986-37042173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               87, 75
               

               Conread position:
               184-358
               

               Cow position:
               chr11:53487138-53486969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               132, 57
               

               Conread position:
               185-352
               

               Cow position:
               chr11:43965861-43965702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               187-320
               

               Cow position:
               chr11:7617188-7617055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               17, 80
               

               Conread position:
               187-360
               

               Cow position:
               chr11:63483961-63484136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               133, 71
               

               Conread position:
               187-360
               

               Cow position:
               chr11:81175615-81175794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               187-364
               

               Cow position:
               chr11:8422099-8421926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               131, 61
               

               Conread position:
               198-351
               

               Cow position:
               chr11:65431548-65431704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               67, 45
               

               Conread position:
               199-360
               

               Cow position:
               chr11:17369561-17369722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               123, 42
               

               Conread position:
               200-347
               

               Cow position:
               chr11:4653223-4653077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               119, 58
               

               Conread position:
               202-356
               

               Cow position:
               chr11:12768432-12768589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               119, 58
               

               Conread position:
               202-369
               

               Cow position:
               chr11:70821078-70821251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               203-363
               

               Cow position:
               chr11:2830691-2830857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               67, 56
               

               Conread position:
               205-361
               

               Cow position:
               chr11:81340504-81340346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               43, 66
               

               Conread position:
               208-360
               

               Cow position:
               chr11:6784248-6784398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               111, 32
               

               Conread position:
               209-356
               

               Cow position:
               chr11:81928467-81928320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               107, 32
               

               Conread position:
               210-360
               

               Cow position:
               chr11:46978352-46978207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               108, 11
               

               Conread position:
               212-371
               

               Cow position:
               chr11:63977101-63977264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               107, 46
               

               Conread position:
               213-347
               

               Cow position:
               chr11:32587079-32586943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               104, 33
               

               Conread position:
               213-348
               

               Cow position:
               chr11:18154508-18154373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               109, 35
               

               Conread position:
               224-359
               

               Cow position:
               chr11:22583016-22583146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               45, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-113
Cow position:	chr11:19508131-19508243 (view UCSC Genome Browser custom track)
Alignm length:	113
Alignm identity:	91
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	0, 0
Conread position:	1-121
Cow position:	chr11:25165278-25165399 (view UCSC Genome Browser custom track)
Alignm length:	122
Alignm identity:	99
Alignm E-value:	9e-26
Alignm gaps (pig, cow):	108, 0
Conread position:	1-153
Cow position:	chr11:47850862-47851012 (view UCSC Genome Browser custom track)
Alignm length:	154
Alignm identity:	115
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	77, 108
Conread position:	1-174
Cow position:	chr11:17968741-17968576 (view UCSC Genome Browser custom track)
Alignm length:	174
Alignm identity:	126
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	55, 0
Conread position:	1-180
Cow position:	chr11:4412179-4412010 (view UCSC Genome Browser custom track)
Alignm length:	180
Alignm identity:	138
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	89, 0
Conread position:	1-195
Cow position:	chr11:955201-955394 (view UCSC Genome Browser custom track)
Alignm length:	195
Alignm identity:	141
Alignm E-value:	5e-31
Alignm gaps (pig, cow):	146, 0
Conread position:	1-198
Cow position:	chr11:42793137-42792943 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	160
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	107, 0
Conread position:	1-203
Cow position:	chr11:65430896-65431089 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	159
Alignm E-value:	1e-36
Alignm gaps (pig, cow):	18, 0
Conread position:	1-231
Cow position:	chr11:38874568-38874339 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	153
Alignm E-value:	7e-23
Alignm gaps (pig, cow):	36, 114
Conread position:	1-237
Cow position:	chr11:10620487-10620259 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	180
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	132, 22
Conread position:	1-239
Cow position:	chr11:30912154-30911933 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	176
Alignm E-value:	6e-33
Alignm gaps (pig, cow):	54, 0
Conread position:	1-255
Cow position:	chr11:33341310-33341058 (view UCSC Genome Browser custom track)
Alignm length:	255
Alignm identity:	188
Alignm E-value:	0
Alignm gaps (pig, cow):	29, 0
Conread position:	1-256
Cow position:	chr11:45898217-45897961 (view UCSC Genome Browser custom track)
Alignm length:	261
Alignm identity:	184
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	162, 105
Conread position:	1-261
Cow position:	chr11:2092175-2092426 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	191
Alignm E-value:	4e-39
Alignm gaps (pig, cow):	129, 55
Conread position:	1-262
Cow position:	chr11:50778209-50778461 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	194
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	118, 0
Conread position:	1-268
Cow position:	chr11:76114490-76114741 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	187
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	85, 0
Conread position:	1-272
Cow position:	chr11:16342404-16342124 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	206
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	64, 33
Conread position:	1-276
Cow position:	chr11:30954834-30955107 (view UCSC Genome Browser custom track)
Alignm length:	277
Alignm identity:	209
Alignm E-value:	0
Alignm gaps (pig, cow):	41, 116
Conread position:	1-281
Cow position:	chr11:66425052-66424766 (view UCSC Genome Browser custom track)
Alignm length:	289
Alignm identity:	204
Alignm E-value:	4.00001e-40
Alignm gaps (pig, cow):	48, 153
Conread position:	1-303
Cow position:	chr11:44234189-44234488 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	222
Alignm E-value:	0
Alignm gaps (pig, cow):	128, 48