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Cow genome map

           
Conread name:
           
Ova1-OVRM10125H10
        

               
Conread position:
               
1-117
               

               
Cow position:
               
chr3:26894491-26894608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1-145
               

               
Cow position:
               
chr3:61191094-61190953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
111, 68
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr3:77496651-77496816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 151
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr3:5851094-5850912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
114, 55
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr3:81277869-81277673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr3:56301514-56301313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr3:4031800-4032012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 145
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr3:65800425-65800634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:75711141-75711377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr3:10347185-10347432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 119
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr3:45534466-45534219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
118, 64
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr3:11711787-11712045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr3:39171653-39171408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr3:2216193-2216457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr3:29887592-29887329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
163, 81
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr3:19006493-19006750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
150, 75
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr3:17447778-17447515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr3:20678005-20677742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr3:26874420-26874691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr3:60265412-60265152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr3:59208644-59208895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:15752801-15752529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:73443257-73442989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr3:55835995-55835711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
93, 147
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr3:81371477-81371765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr3:49327771-49328062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr3:2680346-2680635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr3:57760328-57760624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr3:70565908-70565599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 122
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr3:83845734-83846050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr3:68627851-68627528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 56
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr3:74079809-74079475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 146
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr3:2396949-2396624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
313, 84
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr3:53150159-53150504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 18
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr3:70895880-70896210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 82
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr3:74533182-74533505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 70
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:76922833-76922500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 138
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:17937005-17936672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 59
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:36418636-36418312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 58
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:44932342-44932687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 147
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:68708174-68707847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 107
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:68881282-68880956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 107
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:525180-525502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:52652245-52651904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
197, 44
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr3:54945958-54946297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 115
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr3:83455318-83454979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr3:39970038-39969683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 151
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr3:52608017-52608353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr3:78077023-78077371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 66
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr3:45881739-45882080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 48
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr3:62046492-62046852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr3:11063212-11063543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 80
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr3:78092676-78092329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 51
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr3:6182370-6182050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
317, 55
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr3:23105536-23105178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 149
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr3:50768512-50768866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 111
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr3:7337940-7337597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 54
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr3:38863945-38864307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 153
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr3:53221844-53222199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 84
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:9641395-9641745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 114
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:18393558-18393210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
174, 93
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:36570216-36569850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:53875929-53875575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
247, 68
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:66885204-66884842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr3:80071956-80072332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 146
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr3:15158871-15159222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 117
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr3:54506539-54506900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr3:23169236-23168870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 75
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr3:67744793-67744446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr3:74754158-74754510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
109, 65
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr3:49461102-49460877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 149
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr3:83815958-83815694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr3:55272214-55271947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr3:55189925-55189573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
2-350
               

               
Cow position:
               
chr3:4461658-4461312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 17
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chr3:13302018-13301658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr3:49218483-49218302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
8, 120
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr3:26553884-26553654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr3:2198714-2198962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
60, 104
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr3:58767101-58767352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
125, 54
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr3:30222017-30222281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 125
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chr3:79292661-79292926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr3:12712087-12711807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
39, 126
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr3:48296541-48296811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr3:50614469-50614759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 145
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr3:6689830-6690140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr3:29891581-29891255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 160
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr3:80564795-80565121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 146
               

               
Conread position:
               
3-343
               

               
Cow position:
               
chr3:72246-72591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
3-343
               

               
Cow position:
               
chr3:26970659-26970982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
245, 112
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr3:70609458-70609800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 68
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr3:72473743-72474099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 145
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr3:57754648-57754297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr3:15052120-15051771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 111
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr3:12705714-12705356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 147
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr3:53592864-53592649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
30, 119
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr3:56523597-56523401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr3:27697146-27696929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr3:34294452-34294219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr3:71430375-71430153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr3:66610010-66609787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-234
               

               
Cow position:
               
chr3:53095103-53094872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr3:3638019-3638241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr3:72675925-72676154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr3:73759683-73759454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 116
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr3:7940723-7940493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
110, 125
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr3:5097036-5097283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr3:58969068-58968826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr3:17895679-17895928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
172, 74
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr3:55109782-55109533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr3:61840110-61840358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr3:53588554-53588295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
52, 111
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr3:5100934-5100680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr3:49650218-49650480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr3:53113006-53113267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
103, 123
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr3:116030-116290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr3:70899728-70899990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr3:70401735-70401997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
4-285
               

               
Cow position:
               
chr3:78946000-78945730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
212, 47
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr3:27940295-27940019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr3:65413447-65413129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
102, 123
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr3:32584986-32585292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
4-330
               

               
Cow position:
               
chr3:70334871-70334534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
50, 120
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr3:2036131-2036467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr3:58540696-58540354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
32, 137
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr3:71237989-71238314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
315, 104
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chr3:27109068-27108717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
109, 51
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chr3:55124445-55124115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
102, 34
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr3:75158192-75158526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 121
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr3:30463333-30463004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 39
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:77188270-77188613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
4-347
               

               
Cow position:
               
chr3:2674862-2675207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
4-347
               

               
Cow position:
               
chr3:53909946-53910281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
4-347
               

               
Cow position:
               
chr3:73394953-73395290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:2025017-2025379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:2393132-2392793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
27, 124
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:3985160-3985493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
315, 110
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:8060960-8061296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:14465874-14465539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
110, 30
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:45211130-45211480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:48810804-48810462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
233, 52
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:54100890-54100537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:54434808-54435144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
317, 31
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:59597018-59597349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
313, 7
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:64281099-64280762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 111
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:65968991-65969350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:77365466-77365116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 149
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr3:80740401-80740729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr3:67930349-67929993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
255, 30
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr3:19792725-19793078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
31, 227
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr3:43233340-43233683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr3:75853498-75853155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
67, 148
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr3:55819580-55819930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 151
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:13329945-13329608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr3:56476513-56476857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
120, 77
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr3:14633151-14632795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 38
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr3:15751889-15751538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
4-357
               

               
Cow position:
               
chr3:48241449-48241792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
109, 124
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr3:36375711-36375349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr3:71478426-71478779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr3:210149-210511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr3:14601880-14601523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr3:54782184-54781807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 93
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr3:55970338-55970703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr3:57764060-57764400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
244, 104
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr3:65058535-65058887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr3:70762290-70761934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 101
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr3:82020007-82019654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr3:2518700-2518352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 124
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr3:16752420-16752065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
271, 45
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr3:27274364-27274715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 48
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr3:30179913-30180273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr3:32787293-32787652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
124, 55
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr3:53429063-53428728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
312, 52
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr3:68647997-68648363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 143
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr3:2506644-2506286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr3:53739353-53738990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
102, 117
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr3:7331280-7330947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr3:28908369-28908025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr3:49482878-49482521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr3:63269058-63269424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
244, 19
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr3:74234029-74234375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
344, 52
               

               
Conread position:
               
4-366
               

               
Cow position:
               
chr3:56582676-56583046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
4-366
               

               
Cow position:
               
chr3:68146010-68145659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
5-122
               

               
Cow position:
               
chr3:31501185-31501301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-157
               

               
Cow position:
               
chr3:27212195-27212346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
5-206
               

               
Cow position:
               
chr3:29807299-29807494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr3:31047117-31046899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr3:56541-56315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
178, 31
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr3:20437816-20437594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr3:59799081-59799328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr3:56059640-56059916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 144
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr3:3738322-3738588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
195, 48
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr3:13507300-13507574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 64
               

               
Conread position:
               
5-318
               

               
Cow position:
               
chr3:72390916-72391231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
5-332
               

               
Cow position:
               
chr3:45647514-45647826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
127, 60
               

               
Conread position:
               
5-335
               

               
Cow position:
               
chr3:53046825-53046495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
5-341
               

               
Cow position:
               
chr3:17222310-17221964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 69
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr3:68616491-68616162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr3:59610887-59610544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 55
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr3:69750867-69750560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
316, 44
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr3:13353195-13353540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 144
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr3:51578486-51578148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
157, 30
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:15228991-15228664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
27, 87
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:31309521-31309177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr3:38828600-38828928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 101
               

               
Conread position:
               
5-352
               

               
Cow position:
               
chr3:73915970-73915649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
64, 121
               

               
Conread position:
               
5-353
               

               
Cow position:
               
chr3:29813078-29813407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
314, 109
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr3:17695169-17694813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr3:18686741-18687091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
316, 109
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr3:22232818-22232479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 87
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr3:23920596-23920237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr3:26065837-26066175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 114
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr3:26981898-26982238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr3:68586855-68587209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr3:83474580-83474942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 20
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr3:83490917-83491269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr3:52863350-52863121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
6-265
               

               
Cow position:
               
chr3:20993647-20993903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
123, 7
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr3:67704377-67704648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
100, 140
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr3:44101804-44102112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr3:74134540-74134852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
113, 50
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr3:48073039-48072711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr3:83442047-83441717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
288, 77
               

               
Conread position:
               
6-353
               

               
Cow position:
               
chr3:57273901-57274241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 54
               

               
Conread position:
               
6-353
               

               
Cow position:
               
chr3:73467457-73467807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
6-359
               

               
Cow position:
               
chr3:75687604-75687251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
6-361
               

               
Cow position:
               
chr3:75080605-75080940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 43
               

               
Conread position:
               
7-265
               

               
Cow position:
               
chr3:26219214-26218961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
7-276
               

               
Cow position:
               
chr3:59884237-59883968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
7-331
               

               
Cow position:
               
chr3:4050028-4050340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
7-361
               

               
Cow position:
               
chr3:18459686-18459349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
35, 124
               

               
Conread position:
               
7-361
               

               
Cow position:
               
chr3:60264879-60264532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
8-176
               

               
Cow position:
               
chr3:74409319-74409486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
8-203
               

               
Cow position:
               
chr3:15992551-15992746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
107, 141
               

               
Conread position:
               
8-238
               

               
Cow position:
               
chr3:74502485-74502262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr3:50069601-50069840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
122, 80
               

               
Conread position:
               
8-264
               

               
Cow position:
               
chr3:80581500-80581744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
8-289
               

               
Cow position:
               
chr3:8393773-8394055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chr3:60597379-60597708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr3:22676254-22675933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr3:30940652-30940980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
264, 43
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr3:59473957-59474296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 68
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr3:76713489-76713136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 115
               

               
Conread position:
               
8-352
               

               
Cow position:
               
chr3:55010329-55009992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
8-353
               

               
Cow position:
               
chr3:81087785-81087460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
8-360
               

               
Cow position:
               
chr3:68156575-68156918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 47
               

               
Conread position:
               
8-364
               

               
Cow position:
               
chr3:57577532-57577884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
8-367
               

               
Cow position:
               
chr3:71497307-71496934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr3:15506289-15506556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 74
               

               
Conread position:
               
9-303
               

               
Cow position:
               
chr3:73708886-73709175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr3:69416946-69416615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
9-342
               

               
Cow position:
               
chr3:16333638-16333974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr3:77271435-77271114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
9-352
               

               
Cow position:
               
chr3:15388053-15388400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
9-352
               

               
Cow position:
               
chr3:18066973-18067311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
121, 105
               

               
Conread position:
               
9-353
               

               
Cow position:
               
chr3:58765239-58764905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
10-345
               

               
Cow position:
               
chr3:79094209-79093888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 142
               

               
Conread position:
               
10-353
               

               
Cow position:
               
chr3:5374173-5374490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
312, 63
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr3:59034874-59035089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 109
               

               
Conread position:
               
12-268
               

               
Cow position:
               
chr3:62826778-62826527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
145, 96
               

               
Conread position:
               
12-276
               

               
Cow position:
               
chr3:53508462-53508711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr3:74242836-74243099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
12-298
               

               
Cow position:
               
chr3:79645603-79645304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 140
               

               
Conread position:
               
12-358
               

               
Cow position:
               
chr3:48362926-48363258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 11
               

               
Conread position:
               
12-359
               

               
Cow position:
               
chr3:53790696-53790355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
12-366
               

               
Cow position:
               
chr3:9663331-9662976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
13-315
               

               
Cow position:
               
chr3:26681956-26681674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
293, 43
               

               
Conread position:
               
13-348
               

               
Cow position:
               
chr3:15057765-15057466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
308, 45
               

               
Conread position:
               
13-348
               

               
Cow position:
               
chr3:77581950-77582282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
14-218
               

               
Cow position:
               
chr3:22820411-22820614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
105, 132
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr3:66292334-66292085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
14-320
               

               
Cow position:
               
chr3:74600954-74601257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 102
               

               
Conread position:
               
14-349
               

               
Cow position:
               
chr3:17456422-17456090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
208, 27
               

               
Conread position:
               
14-356
               

               
Cow position:
               
chr3:76268139-76267790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
24, 137
               

               
Conread position:
               
14-359
               

               
Cow position:
               
chr3:71231238-71231587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
14-361
               

               
Cow position:
               
chr3:14801591-14801936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
104, 21
               

               
Conread position:
               
14-361
               

               
Cow position:
               
chr3:24468536-24468196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
128, 105
               

               
Conread position:
               
14-368
               

               
Cow position:
               
chr3:19585704-19586061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 136
               

               
Conread position:
               
14-371
               

               
Cow position:
               
chr3:61224899-61224551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
15-214
               

               
Cow position:
               
chr3:32184177-32183979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 93
               

               
Conread position:
               
15-360
               

               
Cow position:
               
chr3:54374016-54373672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
16-276
               

               
Cow position:
               
chr3:24935215-24935466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
16-337
               

               
Cow position:
               
chr3:49119182-49118865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
16-361
               

               
Cow position:
               
chr3:20675030-20674692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
16-361
               

               
Cow position:
               
chr3:38035747-38035402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 106
               

               
Conread position:
               
16-361
               

               
Cow position:
               
chr3:70676068-70676419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 88
               

               
Conread position:
               
17-359
               

               
Cow position:
               
chr3:75479848-75480185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 58
               

               
Conread position:
               
19-197
               

               
Cow position:
               
chr3:21341114-21340939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
106, 97
               

               
Conread position:
               
19-256
               

               
Cow position:
               
chr3:46541980-46541748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
19-269
               

               
Cow position:
               
chr3:25754874-25755114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
203, 52
               

               
Conread position:
               
19-347
               

               
Cow position:
               
chr3:55177905-55177576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 134
               

               
Conread position:
               
19-348
               

               
Cow position:
               
chr3:70334117-70333793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 96
               

               
Conread position:
               
19-352
               

               
Cow position:
               
chr3:29946242-29946566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
19-354
               

               
Cow position:
               
chr3:23408504-23408182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 90
               

               
Conread position:
               
19-366
               

               
Cow position:
               
chr3:81039898-81039553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
20-284
               

               
Cow position:
               
chr3:62789331-62789067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 131
               

               
Conread position:
               
20-337
               

               
Cow position:
               
chr3:12978768-12978450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
21-332
               

               
Cow position:
               
chr3:56612209-56612522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
21-345
               

               
Cow position:
               
chr3:10958393-10958071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
22-350
               

               
Cow position:
               
chr3:79196610-79196941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 64
               

               
Conread position:
               
25-345
               

               
Cow position:
               
chr3:10372134-10372429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
130, 10
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr3:3883965-3883646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 125
               

               
Conread position:
               
28-277
               

               
Cow position:
               
chr3:1785385-1785145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
30-335
               

               
Cow position:
               
chr3:73820511-73820202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
100, 57
               

               
Conread position:
               
30-342
               

               
Cow position:
               
chr3:71238332-71238646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
240, 96
               

               
Conread position:
               
30-348
               

               
Cow position:
               
chr3:17331585-17331895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 118
               

               
Conread position:
               
30-348
               

               
Cow position:
               
chr3:76155846-76156162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 82
               

               
Conread position:
               
30-351
               

               
Cow position:
               
chr3:73237053-73237362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
292, 39
               

               
Conread position:
               
30-355
               

               
Cow position:
               
chr3:5365536-5365848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
288, 84
               

               
Conread position:
               
30-363
               

               
Cow position:
               
chr3:48900479-48900138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
31-345
               

               
Cow position:
               
chr3:78093524-78093220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 80
               

               
Conread position:
               
31-347
               

               
Cow position:
               
chr3:74584077-74584365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
290, 52
               

               
Conread position:
               
31-352
               

               
Cow position:
               
chr3:18426840-18426520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
171, 88
               

               
Conread position:
               
32-348
               

               
Cow position:
               
chr3:17235348-17235028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
141, 27
               

               
Conread position:
               
35-364
               

               
Cow position:
               
chr3:174811-175134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
231, 86
               

               
Conread position:
               
41-348
               

               
Cow position:
               
chr3:7661722-7662034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
42-268
               

               
Cow position:
               
chr3:34270786-34271006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
183, 89
               

               
Conread position:
               
42-349
               

               
Cow position:
               
chr3:35056108-35055799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 80
               

               
Conread position:
               
42-376
               

               
Cow position:
               
chr3:51402779-51403101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
276, 73
               

               
Conread position:
               
46-237
               

               
Cow position:
               
chr3:12670740-12670553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
46-365
               

               
Cow position:
               
chr3:18179820-18180157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
47-276
               

               
Cow position:
               
chr3:15172955-15173181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
52-361
               

               
Cow position:
               
chr3:15951031-15950731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 63
               

               
Conread position:
               
54-238
               

               
Cow position:
               
chr3:27545939-27545756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
57-306
               

               
Cow position:
               
chr3:27727944-27727703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
59-238
               

               
Cow position:
               
chr3:84175938-84175760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
59-275
               

               
Cow position:
               
chr3:33693704-33693918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 60
               

               
Conread position:
               
59-277
               

               
Cow position:
               
chr3:63177366-63177583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
55, 94
               

               
Conread position:
               
59-330
               

               
Cow position:
               
chr3:21015073-21014798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
142, 88
               

               
Conread position:
               
59-337
               

               
Cow position:
               
chr3:73298974-73299230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
59-340
               

               
Cow position:
               
chr3:66900848-66900559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
59-343
               

               
Cow position:
               
chr3:17058653-17058376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
259, 53
               

               
Conread position:
               
59-343
               

               
Cow position:
               
chr3:54740001-54739729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 88
               

               
Conread position:
               
59-348
               

               
Cow position:
               
chr3:11254271-11253989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
210, 47
               

               
Conread position:
               
59-348
               

               
Cow position:
               
chr3:22221207-22221502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 89
               

               
Conread position:
               
59-352
               

               
Cow position:
               
chr3:51033258-51033552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
202, 32
               

               
Conread position:
               
59-361
               

               
Cow position:
               
chr3:15954199-15953891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
223, 66
               

               
Conread position:
               
59-361
               

               
Cow position:
               
chr3:58318066-58317754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 70
               

               
Conread position:
               
59-361
               

               
Cow position:
               
chr3:59604738-59605030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 22
               

               
Conread position:
               
59-362
               

               
Cow position:
               
chr3:31225326-31225611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
59-371
               

               
Cow position:
               
chr3:15443842-15443524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
223, 55
               

               
Conread position:
               
60-276
               

               
Cow position:
               
chr3:59621758-59621548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
60-358
               

               
Cow position:
               
chr3:19711446-19711151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
198, 55
               

               
Conread position:
               
61-348
               

               
Cow position:
               
chr3:65019976-65019677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
178, 54
               

               
Conread position:
               
63-252
               

               
Cow position:
               
chr3:28496719-28496911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
63-276
               

               
Cow position:
               
chr3:6520082-6519869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
63-284
               

               
Cow position:
               
chr3:55983986-55984206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
63-287
               

               
Cow position:
               
chr3:35621194-35621413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
63-352
               

               
Cow position:
               
chr3:72342136-72342428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
185, 63
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr3:4268691-4268386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr3:57704214-57704520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
63-363
               

               
Cow position:
               
chr3:56678462-56678152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
104, 91
               

               
Conread position:
               
64-276
               

               
Cow position:
               
chr3:54290623-54290410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
184, 83
               

               
Conread position:
               
64-348
               

               
Cow position:
               
chr3:1036918-1037204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
64-361
               

               
Cow position:
               
chr3:9116920-9117227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
193, 40
               

               
Conread position:
               
65-298
               

               
Cow position:
               
chr3:73460857-73461089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 83
               

               
Conread position:
               
65-311
               

               
Cow position:
               
chr3:32409104-32409356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
204, 58
               

               
Conread position:
               
65-332
               

               
Cow position:
               
chr3:7566531-7566261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 87
               

               
Conread position:
               
65-345
               

               
Cow position:
               
chr3:83988425-83988707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
176, 11
               

               
Conread position:
               
65-348
               

               
Cow position:
               
chr3:31361312-31361599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
108, 7
               

               
Conread position:
               
65-350
               

               
Cow position:
               
chr3:34871456-34871746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
65-359
               

               
Cow position:
               
chr3:3656407-3656704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
205, 61
               

               
Conread position:
               
66-361
               

               
Cow position:
               
chr3:22165523-22165225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 81
               

               
Conread position:
               
66-367
               

               
Cow position:
               
chr3:3316918-3316612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
203, 48
               

               
Conread position:
               
67-207
               

               
Cow position:
               
chr3:75907276-75907410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
67-276
               

               
Cow position:
               
chr3:44330540-44330337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
67-348
               

               
Cow position:
               
chr3:44625268-44625003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
68-241
               

               
Cow position:
               
chr3:46108710-46108884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
68-335
               

               
Cow position:
               
chr3:75238354-75238623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
212, 53
               

               
Conread position:
               
69-266
               

               
Cow position:
               
chr3:51349712-51349913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
69-319
               

               
Cow position:
               
chr3:19626612-19626364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
72-238
               

               
Cow position:
               
chr3:56483414-56483582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
73-265
               

               
Cow position:
               
chr3:64135616-64135807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
73-342
               

               
Cow position:
               
chr3:10668979-10668709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
74-238
               

               
Cow position:
               
chr3:54030181-54030344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
74-358
               

               
Cow position:
               
chr3:75608399-75608673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
74-361
               

               
Cow position:
               
chr3:47753126-47753425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
75-262
               

               
Cow position:
               
chr3:3471941-3472129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
57, 74
               

               
Conread position:
               
75-332
               

               
Cow position:
               
chr3:18607565-18607823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
41, 77
               

               
Conread position:
               
77-362
               

               
Cow position:
               
chr3:49363020-49363293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
241, 20
               

               
Conread position:
               
77-364
               

               
Cow position:
               
chr3:4548920-4549208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
81-268
               

               
Cow position:
               
chr3:2067802-2067988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
82-347
               

               
Cow position:
               
chr3:71474498-71474232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
82-348
               

               
Cow position:
               
chr3:31804851-31804594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 24
               

               
Conread position:
               
82-349
               

               
Cow position:
               
chr3:69785716-69785443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
83-220
               

               
Cow position:
               
chr3:19162523-19162656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
83-342
               

               
Cow position:
               
chr3:18001112-18001356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
237, 30
               

               
Conread position:
               
86-239
               

               
Cow position:
               
chr3:70614572-70614423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
86-273
               

               
Cow position:
               
chr3:22716387-22716199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
86-358
               

               
Cow position:
               
chr3:19682606-19682893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
87-336
               

               
Cow position:
               
chr3:51609271-51609020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
181, 59
               

               
Conread position:
               
87-350
               

               
Cow position:
               
chr3:31350190-31349931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
232, 29
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr3:53704051-53703766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr3:10591603-10591326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
87-364
               

               
Cow position:
               
chr3:64196739-64197019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 62
               

               
Conread position:
               
89-239
               

               
Cow position:
               
chr3:478883-478736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
89-330
               

               
Cow position:
               
chr3:11640645-11640894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
89-361
               

               
Cow position:
               
chr3:59299493-59299761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
90-276
               

               
Cow position:
               
chr3:82629230-82629415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
90-291
               

               
Cow position:
               
chr3:3478338-3478140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
90-291
               

               
Cow position:
               
chr3:4480858-4481057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
90-343
               

               
Cow position:
               
chr3:54982163-54981920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
91-347
               

               
Cow position:
               
chr3:76269816-76270063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
230, 24
               

               
Conread position:
               
97-390
               

               
Cow position:
               
chr3:14546926-14547219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
222, 18
               

               
Conread position:
               
101-284
               

               
Cow position:
               
chr3:74802139-74801958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
102-360
               

               
Cow position:
               
chr3:54067728-54067982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
105-343
               

               
Cow position:
               
chr3:59933302-59933551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
107-343
               

               
Cow position:
               
chr3:81234323-81234559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
212, 17
               

               
Conread position:
               
109-349
               

               
Cow position:
               
chr3:75173643-75173423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
110-348
               

               
Cow position:
               
chr3:40213097-40212859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
158, 37
               

               
Conread position:
               
110-349
               

               
Cow position:
               
chr3:79272638-79272399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
112-353
               

               
Cow position:
               
chr3:71703415-71703640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
112-359
               

               
Cow position:
               
chr3:68303253-68303505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
112-360
               

               
Cow position:
               
chr3:33002325-33002572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
104, 32
               

               
Conread position:
               
112-374
               

               
Cow position:
               
chr3:69650952-69650695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
115-276
               

               
Cow position:
               
chr3:64648433-64648592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
115-367
               

               
Cow position:
               
chr3:56949149-56948903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
116-281
               

               
Cow position:
               
chr3:21997846-21997683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
116-361
               

               
Cow position:
               
chr3:39248084-39247843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
118-360
               

               
Cow position:
               
chr3:49344637-49344880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
18, 8
               

               
Conread position:
               
120-283
               

               
Cow position:
               
chr3:38100087-38100250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
120-369
               

               
Cow position:
               
chr3:48483123-48483371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr3:9120792-9121017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 26
               

               
Conread position:
               
121-361
               

               
Cow position:
               
chr3:24596475-24596242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
223, 9
               

               
Conread position:
               
121-390
               

               
Cow position:
               
chr3:11281713-11281987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
149, 33
               

               
Conread position:
               
124-353
               

               
Cow position:
               
chr3:82366079-82366310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
126-348
               

               
Cow position:
               
chr3:5305750-5305979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
140, 18
               

               
Conread position:
               
127-320
               

               
Cow position:
               
chr3:16505522-16505339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
127-335
               

               
Cow position:
               
chr3:26603602-26603383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr3:8349612-8349397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr3:3946991-3947211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
175, 22
               

               
Conread position:
               
127-355
               

               
Cow position:
               
chr3:52845503-52845739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
127-360
               

               
Cow position:
               
chr3:68004749-68004522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
127-361
               

               
Cow position:
               
chr3:44961051-44960829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
190, 22
               

               
Conread position:
               
127-361
               

               
Cow position:
               
chr3:75107727-75107959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 20
               

               
Conread position:
               
127-363
               

               
Cow position:
               
chr3:23132216-23131978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
128-268
               

               
Cow position:
               
chr3:41652330-41652469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
131-294
               

               
Cow position:
               
chr3:50593955-50593795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
133-347
               

               
Cow position:
               
chr3:81616493-81616275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr3:53084029-53083796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
135-320
               

               
Cow position:
               
chr3:82123587-82123408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
135-346
               

               
Cow position:
               
chr3:15973527-15973744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 12
               

               
Conread position:
               
135-369
               

               
Cow position:
               
chr3:44959903-44960145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
135, 22
               

               
Conread position:
               
136-237
               

               
Cow position:
               
chr3:35283732-35283832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
137-347
               

               
Cow position:
               
chr3:71423588-71423394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
137-350
               

               
Cow position:
               
chr3:84137852-84137635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
133, 10
               

               
Conread position:
               
137-359
               

               
Cow position:
               
chr3:61024060-61023834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
133, 14
               

               
Conread position:
               
137-367
               

               
Cow position:
               
chr3:5040344-5040105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
142-275
               

               
Cow position:
               
chr3:24371890-24372020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
142-361
               

               
Cow position:
               
chr3:22924408-22924191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
177, 105
               

               
Conread position:
               
143-371
               

               
Cow position:
               
chr3:73335252-73335475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
145-348
               

               
Cow position:
               
chr3:11229395-11229194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
199, 124
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chr3:4120396-4120172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
176, 114
               

               
Conread position:
               
146-255
               

               
Cow position:
               
chr3:16601413-16601522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
146-361
               

               
Cow position:
               
chr3:15160491-15160703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
173, 102
               

               
Conread position:
               
146-361
               

               
Cow position:
               
chr3:67407395-67407179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 101
               

               
Conread position:
               
147-314
               

               
Cow position:
               
chr3:28870779-28870946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
114, 89
               

               
Conread position:
               
148-366
               

               
Cow position:
               
chr3:32247985-32248202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
149-320
               

               
Cow position:
               
chr3:35238987-35239156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
149-344
               

               
Cow position:
               
chr3:20021243-20021440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
172, 89
               

               
Conread position:
               
151-320
               

               
Cow position:
               
chr3:19788854-19788686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
153-314
               

               
Cow position:
               
chr3:73421515-73421353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
153-347
               

               
Cow position:
               
chr3:59947643-59947843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 73
               

               
Conread position:
               
153-350
               

               
Cow position:
               
chr3:59681926-59681729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 66
               

               
Conread position:
               
154-347
               

               
Cow position:
               
chr3:73701483-73701673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
154-348
               

               
Cow position:
               
chr3:51150107-51150306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 178
               

               
Conread position:
               
154-361
               

               
Cow position:
               
chr3:31115291-31115089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
167, 87
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr3:35074859-35075060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
165, 103
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr3:84154397-84154593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 40
               

               
Conread position:
               
159-350
               

               
Cow position:
               
chr3:84212548-84212361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
153, 31
               

               
Conread position:
               
159-366
               

               
Cow position:
               
chr3:76056301-76056094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
160, 82
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr3:76168645-76168441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
163-360
               

               
Cow position:
               
chr3:43389140-43388938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 194
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chr3:78258766-78258561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
165-361
               

               
Cow position:
               
chr3:23818481-23818675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
154, 82
               

               
Conread position:
               
165-371
               

               
Cow position:
               
chr3:19611360-19611154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
154, 13
               

               
Conread position:
               
166-347
               

               
Cow position:
               
chr3:19709101-19709280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
153, 81
               

               
Conread position:
               
166-356
               

               
Cow position:
               
chr3:22868729-22868532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
167-345
               

               
Cow position:
               
chr3:56943934-56943757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
152, 80
               

               
Conread position:
               
167-358
               

               
Cow position:
               
chr3:43896068-43895877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
150, 80
               

               
Conread position:
               
167-359
               

               
Cow position:
               
chr3:29234690-29234491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr3:24220586-24220391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
102, 93
               

               
Conread position:
               
170-300
               

               
Cow position:
               
chr3:48783344-48783474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
170-348
               

               
Cow position:
               
chr3:37641320-37641502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
170-361
               

               
Cow position:
               
chr3:17531743-17531553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 169
               

               
Conread position:
               
170-361
               

               
Cow position:
               
chr3:79893503-79893307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
177-364
               

               
Cow position:
               
chr3:32436637-32436826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
178-364
               

               
Cow position:
               
chr3:26977537-26977728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
179-356
               

               
Cow position:
               
chr3:74050698-74050523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 68
               

               
Conread position:
               
180-359
               

               
Cow position:
               
chr3:24774658-24774830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
169, 63
               

               
Conread position:
               
182-361
               

               
Cow position:
               
chr3:68565829-68566001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
183-347
               

               
Cow position:
               
chr3:26393292-26393124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
183-347
               

               
Cow position:
               
chr3:68094152-68094327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
184-363
               

               
Cow position:
               
chr3:77098814-77098636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
135, 74
               

               
Conread position:
               
186-355
               

               
Cow position:
               
chr3:18471312-18471486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
186-356
               

               
Cow position:
               
chr3:40958116-40957942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
131, 61
               

               
Conread position:
               
186-361
               

               
Cow position:
               
chr3:68624228-68624409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
187-346
               

               
Cow position:
               
chr3:57641812-57641977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
187-359
               

               
Cow position:
               
chr3:44782351-44782525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
188-361
               

               
Cow position:
               
chr3:79398155-79398335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
188-366
               

               
Cow position:
               
chr3:82425066-82424888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 71
               

               
Conread position:
               
190-361
               

               
Cow position:
               
chr3:2636964-2637135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
127, 57
               

               
Conread position:
               
195-372
               

               
Cow position:
               
chr3:16107347-16107176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
151, 46
               

               
Conread position:
               
200-363
               

               
Cow position:
               
chr3:75907936-75908100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
205-357
               

               
Cow position:
               
chr3:5821423-5821267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
205-363
               

               
Cow position:
               
chr3:61211427-61211276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
205-364
               

               
Cow position:
               
chr3:8540537-8540691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
116, 53
               

               
Conread position:
               
206-361
               

               
Cow position:
               
chr3:39967458-39967308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
209-360
               

               
Cow position:
               
chr3:24370435-24370579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               
Show alignments to all cow chromosomes.