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Cow genome map

           
Conread name:
           
Ova1-OVRM10125H10
        

               
Conread position:
               
1-114
               

               
Cow position:
               
chr9:53608219-53608332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr9:31292864-31292724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:41652961-41652813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr9:28773297-28773133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr9:30195385-30195214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
128, 54
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr9:22361187-22360989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
108, 54
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr9:1952093-1952293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr9:36827306-36827108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr9:38344066-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
137, 147
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr9:43875546-43875774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
120, 38
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr9:23430970-23431224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
107, 74
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr9:19493287-19493547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 147
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr9:32371585-32371833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr9:55084121-55084388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:8563013-8562727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 159
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:9654136-9654402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:11319458-11319731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
265, 93
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:21888345-21888073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 124
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:44921215-44921497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
200, 146
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:54528687-54528419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr9:7634449-7634175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 120
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr9:3738046-3738322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 100
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr9:56773255-56772974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 65
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr9:9405875-9406156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 80
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr9:36445799-36445511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
113, 52
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr9:4267808-4268094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 96
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr9:62668428-62668142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr9:766977-767285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr9:9552263-9551952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr9:23388502-23388820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
129, 91
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr9:29006737-29006405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr9:33119710-33120042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 146
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr9:64106083-64105748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 152
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr9:34957879-34958210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 71
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr9:30124096-30123770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 87
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr9:52578361-52578701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
135, 62
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr9:34689427-34689771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
110, 12
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr9:33218776-33219125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
118, 67
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr9:9516594-9516918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 17
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr9:58614665-58614327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr9:4340994-4341327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 105
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr9:9443421-9443772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 132
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr9:24887374-24887034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 11
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr9:51620612-51620273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 19
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr9:55795932-55795587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr9:20091217-20090886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 55
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr9:10118489-10118841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
232, 107
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr9:10144300-10144659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 147
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr9:13169490-13169841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 17
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr9:8547991-8547630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr9:55256375-55256732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 134
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr9:9403000-9403355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 107
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr9:58979573-58979221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
127, 106
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr9:61303179-61302818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 149
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr9:19067953-19067581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 61
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr9:6192287-6192647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 56
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr9:49710014-49709653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr9:56453504-56453158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 78
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr9:41728432-41728069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr9:53762873-53762510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 70
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr9:45141429-45141790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 22
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr9:34286976-34286603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr9:38793189-38792819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 111
               

               
Conread position:
               
3-153
               

               
Cow position:
               
chr9:49403927-49403785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr9:59507261-59507103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr9:27029530-27029740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr9:54924796-54924582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 141
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr9:5209754-5209522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 48
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr9:9823332-9823564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr9:3932137-3931878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 105
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr9:28983353-28983098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
119, 34
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr9:51204894-51204594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
243, 79
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr9:61739092-61738751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr9:61022784-61022447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 123
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr9:11299517-11299846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 108
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chr9:30477607-30477955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr9:28451984-28452353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 105
               

               
Conread position:
               
3-370
               

               
Cow position:
               
chr9:6397607-6397978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr9:6225279-6225470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr9:4861561-4861344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 145
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr9:1973115-1972890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 111
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr9:17928932-17928699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
129, 102
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr9:5319802-5319547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr9:60027370-60027122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 44
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr9:46316613-46316861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
244, 52
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr9:5509894-5509644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
249, 82
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr9:55321810-55321553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr9:28948025-28947777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr9:5246028-5245766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
103, 52
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr9:43871152-43870888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 256
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr9:62442463-62442194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr9:1520561-1520834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr9:18216931-18217194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr9:50543251-50543520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr9:42445806-42446082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr9:44467180-44467440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
244, 81
               

               
Conread position:
               
4-289
               

               
Cow position:
               
chr9:31078912-31079185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
4-291
               

               
Cow position:
               
chr9:28354691-28354408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
171, 69
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr9:55074957-55075241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr9:17411007-17411310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 134
               

               
Conread position:
               
4-330
               

               
Cow position:
               
chr9:13205395-13205720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr9:3070245-3070572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr9:41513797-41513491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr9:9815588-9815255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr9:9753216-9753562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr9:41679918-41679596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 131
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr9:42498002-42497662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 159
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr9:16300393-16300742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
90, 42
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr9:9199611-9199940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
4-347
               

               
Cow position:
               
chr9:1371108-1370765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
54, 129
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr9:5327427-5327091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
315, 8
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr9:9595782-9596121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 112
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr9:21459985-21460325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 33
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr9:33598154-33597801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
33, 117
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr9:40215416-40215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
4-350
               

               
Cow position:
               
chr9:6338971-6338619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 125
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr9:8920171-8919830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 188
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr9:5501030-5500688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
99, 145
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr9:48628200-48627847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 54
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr9:28726548-28726908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 144
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chr9:11168903-11168563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 112
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chr9:52407342-52406988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
27, 127
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr9:8998529-8998170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 149
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr9:6840180-6839808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 155
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr9:32676855-32676494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr9:55118252-55117899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 90
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr9:8901051-8901416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr9:19555547-19555204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr9:25557138-25556799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 51
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr9:44709998-44709649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr9:35128667-35128288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
4-367
               

               
Cow position:
               
chr9:5433811-5433454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
5-145
               

               
Cow position:
               
chr9:60037825-60037684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
5-146
               

               
Cow position:
               
chr9:4928799-4928658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr9:10308836-10309071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr9:35105609-35105877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
42, 125
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chr9:8288789-8288523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chr9:30652534-30652806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
5-335
               

               
Cow position:
               
chr9:22443450-22443781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
5-337
               

               
Cow position:
               
chr9:22151913-22152242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr9:1938301-1937932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr9:13670804-13670465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr9:30138300-30137952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 89
               

               
Conread position:
               
5-357
               

               
Cow position:
               
chr9:20848103-20847765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 142
               

               
Conread position:
               
5-358
               

               
Cow position:
               
chr9:34374760-34375109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 58
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr9:17740776-17741115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 88
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr9:5226996-5227345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr9:29825208-29824833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
102, 147
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr9:35027994-35028348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr9:18381031-18380680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr9:34697125-34697488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr9:60394879-60395235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 109
               

               
Conread position:
               
5-370
               

               
Cow position:
               
chr9:45285359-45285731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
5-371
               

               
Cow position:
               
chr9:50606777-50607123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 109
               

               
Conread position:
               
6-158
               

               
Cow position:
               
chr9:34666589-34666442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
6-203
               

               
Cow position:
               
chr9:34742558-34742747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr9:11313339-11313609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 120
               

               
Conread position:
               
6-279
               

               
Cow position:
               
chr9:23261604-23261335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 108
               

               
Conread position:
               
6-284
               

               
Cow position:
               
chr9:3782531-3782269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
6-284
               

               
Cow position:
               
chr9:9461484-9461755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 153
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr9:55287727-55288044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
268, 68
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr9:26279006-26279343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 31
               

               
Conread position:
               
6-353
               

               
Cow position:
               
chr9:41789454-41789126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
311, 53
               

               
Conread position:
               
6-360
               

               
Cow position:
               
chr9:26477387-26477028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr9:64091855-64091515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 126
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr9:10650133-10650460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
8-238
               

               
Cow position:
               
chr9:24997352-24997575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
8-261
               

               
Cow position:
               
chr9:24873000-24872753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
239, 60
               

               
Conread position:
               
8-267
               

               
Cow position:
               
chr9:5763465-5763716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr9:44831886-44832185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 67
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr9:20416346-20416659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
246, 38
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr9:12225812-12226144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
232, 49
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr9:51720733-51721046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
8-339
               

               
Cow position:
               
chr9:29184964-29185302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
98, 141
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chr9:5442161-5441845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chr9:36490723-36491070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 145
               

               
Conread position:
               
8-346
               

               
Cow position:
               
chr9:11123316-11123649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
311, 16
               

               
Conread position:
               
8-346
               

               
Cow position:
               
chr9:17871935-17872276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 143
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr9:5263669-5263334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 45
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr9:20579437-20579759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
8-360
               

               
Cow position:
               
chr9:6933905-6934265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
8-364
               

               
Cow position:
               
chr9:7409951-7409592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 153
               

               
Conread position:
               
9-268
               

               
Cow position:
               
chr9:62357361-62357616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
109, 140
               

               
Conread position:
               
9-273
               

               
Cow position:
               
chr9:5077553-5077797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr9:5594668-5594407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chr9:12910234-12910586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 115
               

               
Conread position:
               
9-370
               

               
Cow position:
               
chr9:57896952-57897290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
321, 25
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:49292981-49293232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr9:50080881-50081142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 102
               

               
Conread position:
               
12-337
               

               
Cow position:
               
chr9:17799794-17799475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 136
               

               
Conread position:
               
12-346
               

               
Cow position:
               
chr9:5456009-5456341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
12-349
               

               
Cow position:
               
chr9:20942444-20942791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
12-361
               

               
Cow position:
               
chr9:8723958-8723611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
96, 56
               

               
Conread position:
               
13-361
               

               
Cow position:
               
chr9:28747360-28747701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 45
               

               
Conread position:
               
14-235
               

               
Cow position:
               
chr9:22114472-22114690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 107
               

               
Conread position:
               
15-252
               

               
Cow position:
               
chr9:3220300-3220064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
15-330
               

               
Cow position:
               
chr9:30402258-30402582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 123
               

               
Conread position:
               
16-359
               

               
Cow position:
               
chr9:36410195-36410529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 100
               

               
Conread position:
               
17-350
               

               
Cow position:
               
chr9:22318506-22318187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
162, 27
               

               
Conread position:
               
19-268
               

               
Cow position:
               
chr9:5219011-5219259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
160, 97
               

               
Conread position:
               
19-348
               

               
Cow position:
               
chr9:3378902-3378591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
300, 28
               

               
Conread position:
               
19-348
               

               
Cow position:
               
chr9:26344811-26345133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 34
               

               
Conread position:
               
19-359
               

               
Cow position:
               
chr9:59013176-59013519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 59
               

               
Conread position:
               
19-364
               

               
Cow position:
               
chr9:52267599-52267949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
111, 88
               

               
Conread position:
               
19-437
               

               
Cow position:
               
chr9:5836317-5835888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
20-359
               

               
Cow position:
               
chr9:43757694-43757364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 63
               

               
Conread position:
               
21-348
               

               
Cow position:
               
chr9:33114501-33114168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
253, 21
               

               
Conread position:
               
22-361
               

               
Cow position:
               
chr9:39011322-39011649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 55
               

               
Conread position:
               
24-167
               

               
Cow position:
               
chr9:42509267-42509129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
108, 48
               

               
Conread position:
               
25-252
               

               
Cow position:
               
chr9:43937091-43936874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
27-343
               

               
Cow position:
               
chr9:7953049-7952736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
244, 44
               

               
Conread position:
               
28-361
               

               
Cow position:
               
chr9:32669799-32670129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
241, 87
               

               
Conread position:
               
30-234
               

               
Cow position:
               
chr9:21030455-21030254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
30-236
               

               
Cow position:
               
chr9:6089238-6089033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
30-284
               

               
Cow position:
               
chr9:17310416-17310665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
98, 90
               

               
Conread position:
               
30-332
               

               
Cow position:
               
chr9:3186274-3185974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 106
               

               
Conread position:
               
30-367
               

               
Cow position:
               
chr9:4262946-4263279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 119
               

               
Conread position:
               
40-361
               

               
Cow position:
               
chr9:13743796-13744118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
224, 57
               

               
Conread position:
               
41-246
               

               
Cow position:
               
chr9:41486105-41486308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
87, 67
               

               
Conread position:
               
41-348
               

               
Cow position:
               
chr9:31359736-31359433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
41-348
               

               
Cow position:
               
chr9:41283149-41282841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
234, 73
               

               
Conread position:
               
43-348
               

               
Cow position:
               
chr9:8636803-8636507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
57-305
               

               
Cow position:
               
chr9:6596115-6596350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
57-320
               

               
Cow position:
               
chr9:45728899-45728639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
57-360
               

               
Cow position:
               
chr9:53109372-53109067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
191, 92
               

               
Conread position:
               
57-364
               

               
Cow position:
               
chr9:58131844-58132136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 53
               

               
Conread position:
               
58-360
               

               
Cow position:
               
chr9:33584564-33584868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 88
               

               
Conread position:
               
58-360
               

               
Cow position:
               
chr9:51717462-51717774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 236
               

               
Conread position:
               
59-332
               

               
Cow position:
               
chr9:38846226-38846496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
205, 60
               

               
Conread position:
               
59-348
               

               
Cow position:
               
chr9:60081023-60080721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
59-349
               

               
Cow position:
               
chr9:40005593-40005305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
59-358
               

               
Cow position:
               
chr9:44396776-44396479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
221, 48
               

               
Conread position:
               
59-359
               

               
Cow position:
               
chr9:1867567-1867289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
59-367
               

               
Cow position:
               
chr9:34410278-34410584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
253, 57
               

               
Conread position:
               
59-376
               

               
Cow position:
               
chr9:6189254-6189562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 55
               

               
Conread position:
               
60-335
               

               
Cow position:
               
chr9:21080679-21080415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
60-351
               

               
Cow position:
               
chr9:19903196-19902917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
259, 24
               

               
Conread position:
               
60-356
               

               
Cow position:
               
chr9:54493254-54492955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
60-359
               

               
Cow position:
               
chr9:38941315-38941619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
222, 54
               

               
Conread position:
               
60-361
               

               
Cow position:
               
chr9:41785337-41785037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
62-276
               

               
Cow position:
               
chr9:46664936-46664730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
172, 52
               

               
Conread position:
               
62-361
               

               
Cow position:
               
chr9:23955869-23956160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 51
               

               
Conread position:
               
63-268
               

               
Cow position:
               
chr9:10819719-10819915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
63-298
               

               
Cow position:
               
chr9:38645229-38645461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 83
               

               
Conread position:
               
63-347
               

               
Cow position:
               
chr9:51566381-51566668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
64-303
               

               
Cow position:
               
chr9:45171106-45171346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 84
               

               
Conread position:
               
64-337
               

               
Cow position:
               
chr9:20465848-20466104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
65-260
               

               
Cow position:
               
chr9:26310620-26310426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
65-304
               

               
Cow position:
               
chr9:1729560-1729801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
65-350
               

               
Cow position:
               
chr9:9311972-9311685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
252, 82
               

               
Conread position:
               
65-364
               

               
Cow position:
               
chr9:37934125-37934426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
219, 46
               

               
Conread position:
               
66-336
               

               
Cow position:
               
chr9:21387533-21387271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 83
               

               
Conread position:
               
67-265
               

               
Cow position:
               
chr9:28754929-28754732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
68-255
               

               
Cow position:
               
chr9:32981963-32982150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
68-364
               

               
Cow position:
               
chr9:52754748-52755037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
118, 39
               

               
Conread position:
               
73-276
               

               
Cow position:
               
chr9:19758812-19758626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
74-343
               

               
Cow position:
               
chr9:43159844-43159589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
75-347
               

               
Cow position:
               
chr9:58451978-58452240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
247, 14
               

               
Conread position:
               
76-210
               

               
Cow position:
               
chr9:1893945-1894074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
76-348
               

               
Cow position:
               
chr9:9460076-9459818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
119, 36
               

               
Conread position:
               
76-361
               

               
Cow position:
               
chr9:36453440-36453721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
242, 37
               

               
Conread position:
               
77-332
               

               
Cow position:
               
chr9:29194923-29195187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 23
               

               
Conread position:
               
78-361
               

               
Cow position:
               
chr9:6954148-6954437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
79-284
               

               
Cow position:
               
chr9:44770100-44770294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
79-359
               

               
Cow position:
               
chr9:6952205-6951931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
81-357
               

               
Cow position:
               
chr9:17840579-17840860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
83-351
               

               
Cow position:
               
chr9:8628822-8629086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
237, 66
               

               
Conread position:
               
86-283
               

               
Cow position:
               
chr9:53750864-53751064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
86-357
               

               
Cow position:
               
chr9:37199214-37198947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 23
               

               
Conread position:
               
87-255
               

               
Cow position:
               
chr9:9624920-9625085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
87-336
               

               
Cow position:
               
chr9:33823209-33822958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
87-346
               

               
Cow position:
               
chr9:5342162-5342415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
179, 34
               

               
Conread position:
               
87-360
               

               
Cow position:
               
chr9:13460329-13460591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
90-272
               

               
Cow position:
               
chr9:54615214-54615391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
90-347
               

               
Cow position:
               
chr9:59997946-59998200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
90-353
               

               
Cow position:
               
chr9:9686327-9686595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
179, 26
               

               
Conread position:
               
97-264
               

               
Cow position:
               
chr9:30780194-30780035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
97-347
               

               
Cow position:
               
chr9:63361636-63361881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
97-350
               

               
Cow position:
               
chr9:5110940-5110682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
181, 50
               

               
Conread position:
               
97-378
               

               
Cow position:
               
chr9:61351259-61351546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
178, 24
               

               
Conread position:
               
101-256
               

               
Cow position:
               
chr9:56204884-56204734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
105-319
               

               
Cow position:
               
chr9:24652476-24652260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
135, 21
               

               
Conread position:
               
107-352
               

               
Cow position:
               
chr9:57131565-57131323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 19
               

               
Conread position:
               
113-319
               

               
Cow position:
               
chr9:59835023-59834833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
113-361
               

               
Cow position:
               
chr9:2037497-2037251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
114-359
               

               
Cow position:
               
chr9:8992114-8992362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
207, 33
               

               
Conread position:
               
115-348
               

               
Cow position:
               
chr9:12337966-12337729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
164, 34
               

               
Conread position:
               
115-360
               

               
Cow position:
               
chr9:48017045-48016807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
116-364
               

               
Cow position:
               
chr9:47214481-47214736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
118-348
               

               
Cow position:
               
chr9:19771433-19771189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
120-359
               

               
Cow position:
               
chr9:39709916-39709673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
150, 34
               

               
Conread position:
               
121-284
               

               
Cow position:
               
chr9:39758577-39758415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr9:36628176-36627952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
198, 28
               

               
Conread position:
               
123-354
               

               
Cow position:
               
chr9:49402707-49402471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 23
               

               
Conread position:
               
126-361
               

               
Cow position:
               
chr9:59699494-59699735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
127-255
               

               
Cow position:
               
chr9:6685951-6685824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
127-276
               

               
Cow position:
               
chr9:16137290-16137437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr9:5104351-5104581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr9:22440430-22440644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
192, 22
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr9:33151794-33151578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
192, 19
               

               
Conread position:
               
127-360
               

               
Cow position:
               
chr9:4241458-4241223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
103, 20
               

               
Conread position:
               
127-364
               

               
Cow position:
               
chr9:22466824-22466594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
128-276
               

               
Cow position:
               
chr9:6293646-6293499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
128-359
               

               
Cow position:
               
chr9:52518772-52519004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
131-276
               

               
Cow position:
               
chr9:55354659-55354516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
133-362
               

               
Cow position:
               
chr9:44758886-44759110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
187, 15
               

               
Conread position:
               
135-358
               

               
Cow position:
               
chr9:27345540-27345770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
136-360
               

               
Cow position:
               
chr9:11098413-11098634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 11
               

               
Conread position:
               
137-335
               

               
Cow position:
               
chr9:22165671-22165875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
137-337
               

               
Cow position:
               
chr9:21292365-21292567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
137-352
               

               
Cow position:
               
chr9:35832577-35832790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
207, 12
               

               
Conread position:
               
138-347
               

               
Cow position:
               
chr9:44584634-44584431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
183, 15
               

               
Conread position:
               
138-348
               

               
Cow position:
               
chr9:44822283-44822493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
138-359
               

               
Cow position:
               
chr9:23970855-23971076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
139-361
               

               
Cow position:
               
chr9:42586516-42586733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
180, 8
               

               
Conread position:
               
145-359
               

               
Cow position:
               
chr9:43202369-43202157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
146-350
               

               
Cow position:
               
chr9:7543227-7543430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
149-348
               

               
Cow position:
               
chr9:35306315-35306520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
121, 110
               

               
Conread position:
               
150-331
               

               
Cow position:
               
chr9:34707282-34707464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
169, 64
               

               
Conread position:
               
151-353
               

               
Cow position:
               
chr9:42508861-42508652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
151-356
               

               
Cow position:
               
chr9:40603697-40603489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
118, 87
               

               
Conread position:
               
153-348
               

               
Cow position:
               
chr9:59897616-59897425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
154-331
               

               
Cow position:
               
chr9:44944452-44944627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
167, 72
               

               
Conread position:
               
154-356
               

               
Cow position:
               
chr9:12773716-12773515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
167, 87
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr9:26394325-26394515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
155-361
               

               
Cow position:
               
chr9:19718315-19718517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
163, 88
               

               
Conread position:
               
156-343
               

               
Cow position:
               
chr9:24079326-24079139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
165, 91
               

               
Conread position:
               
156-349
               

               
Cow position:
               
chr9:31344583-31344782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
127, 85
               

               
Conread position:
               
156-353
               

               
Cow position:
               
chr9:23840370-23840581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
128, 102
               

               
Conread position:
               
158-320
               

               
Cow position:
               
chr9:64310757-64310919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 32
               

               
Conread position:
               
159-350
               

               
Cow position:
               
chr9:32878075-32877885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
159-350
               

               
Cow position:
               
chr9:36458020-36457823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
113, 79
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr9:5186846-5187041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
159-363
               

               
Cow position:
               
chr9:34276189-34276400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 82
               

               
Conread position:
               
160-335
               

               
Cow position:
               
chr9:1712686-1712866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
162-335
               

               
Cow position:
               
chr9:52998362-52998536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 52
               

               
Conread position:
               
162-356
               

               
Cow position:
               
chr9:40984523-40984325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
110, 85
               

               
Conread position:
               
162-358
               

               
Cow position:
               
chr9:55807649-55807453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
157, 85
               

               
Conread position:
               
162-358
               

               
Cow position:
               
chr9:62631653-62631848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
162-363
               

               
Cow position:
               
chr9:36401647-36401846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
160, 85
               

               
Conread position:
               
162-371
               

               
Cow position:
               
chr9:41470080-41470293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
163-352
               

               
Cow position:
               
chr9:32052293-32052101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
141, 84
               

               
Conread position:
               
167-336
               

               
Cow position:
               
chr9:12269043-12268876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
152, 59
               

               
Conread position:
               
168-361
               

               
Cow position:
               
chr9:28315441-28315241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
99, 185
               

               
Conread position:
               
170-343
               

               
Cow position:
               
chr9:48900826-48901001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
175-343
               

               
Cow position:
               
chr9:61300972-61301143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
175-361
               

               
Cow position:
               
chr9:44918275-44918461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
139, 72
               

               
Conread position:
               
175-362
               

               
Cow position:
               
chr9:54630315-54630140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
176-367
               

               
Cow position:
               
chr9:33101111-33101296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
143, 71
               

               
Conread position:
               
178-345
               

               
Cow position:
               
chr9:45740140-45740312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
179-343
               

               
Cow position:
               
chr9:11873303-11873461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
179-361
               

               
Cow position:
               
chr9:11380645-11380828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
138, 68
               

               
Conread position:
               
180-358
               

               
Cow position:
               
chr9:57642507-57642331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
183-360
               

               
Cow position:
               
chr9:5358008-5357838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
183-362
               

               
Cow position:
               
chr9:11447811-11447992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
184-347
               

               
Cow position:
               
chr9:14519384-14519545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 74
               

               
Conread position:
               
184-359
               

               
Cow position:
               
chr9:6237496-6237672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 76
               

               
Conread position:
               
184-366
               

               
Cow position:
               
chr9:64140563-64140753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
187-348
               

               
Cow position:
               
chr9:9495149-9494988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
129, 60
               

               
Conread position:
               
192-379
               

               
Cow position:
               
chr9:19656988-19657175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
195-358
               

               
Cow position:
               
chr9:1917964-1917801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
195-372
               

               
Cow position:
               
chr9:52153299-52153122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 83
               

               
Conread position:
               
199-356
               

               
Cow position:
               
chr9:45369212-45369362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
199-360
               

               
Cow position:
               
chr9:30194992-30194829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
62, 75
               

               
Conread position:
               
199-363
               

               
Cow position:
               
chr9:22360845-22360687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
200-348
               

               
Cow position:
               
chr9:388213-388361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
119, 7
               

               
Conread position:
               
200-355
               

               
Cow position:
               
chr9:9985169-9985013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
213-361
               

               
Cow position:
               
chr9:64302664-64302816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 45
               

               
Conread position:
               
228-348
               

               
Cow position:
               
chr9:21816483-21816360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 30
               
Show alignments to all cow chromosomes.