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Cow genome map

           
Conread name:
           
Ova1-OVRM10133B11
        

               
Conread position:
               
1-149
               

               
Cow position:
               
chr9:9491022-9490886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr9:18002720-18002925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
165, 32
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr9:32812577-32812378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr9:50667653-50667450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
165, 42
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr9:40604179-40603961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
151, 47
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr9:16538578-16538803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 91
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr9:28773346-28773133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr9:50702883-50703124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
169, 91
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr9:6225223-6225470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
165, 43
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr9:1952040-1952290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr9:28735707-28735463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
209, 48
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr9:38344123-38343864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
167, 96
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr9:17929001-17928705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr9:35375653-35375362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
167, 40
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr9:5763401-5763714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 123
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr9:9461426-9461746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
167, 44
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr9:18342952-18342634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
268, 59
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr9:55084068-55084398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr9:11319403-11319734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
168, 32
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr9:1520501-1520840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
165, 91
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr9:4267751-4268085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 96
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr9:8563070-8562721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 201
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr9:31078853-31079180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 47
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr9:42445753-42446083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
164, 44
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr9:4646099-4646437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
136, 25
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr9:54528744-54528398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
165, 79
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr9:61997366-61997715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
168, 93
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr9:17740715-17741076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 95
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr9:9416178-9416535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
268, 34
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr9:33119653-33120036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 96
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr9:18215680-18216068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr9:38846120-38846497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
268, 57
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr9:55287665-55288045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
268, 91
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr9:3186371-3185972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 149
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr9:21030545-21030147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 91
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr9:29184904-29185298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 40
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr9:34957822-34958210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 95
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr9:6339031-6338634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 91
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr9:52484688-52485071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
144, 42
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr9:32815867-32815492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
268, 60
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr9:8937377-8936987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
268, 91
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr9:9723653-9724040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
124, 14
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr9:20321887-20322253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
176, 40
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr9:22151858-22152243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
167, 42
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr9:22443382-22443784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr9:53138890-53139296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr9:20848165-20847784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr9:28726494-28726891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 47
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr9:32307007-32307396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr9:31347183-31346786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr9:6933843-6934246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 22
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr9:30402191-30402594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr9:35167397-35167004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr9:36490666-36491069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr9:42498058-42497663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr9:61739146-61738751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
172, 15
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr9:5226935-5227330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 91
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr9:9516541-9516918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr9:15215452-15215860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 59
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr9:15805692-15806096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 78
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr9:28747293-28747688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 40
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr9:45141376-45141766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 44
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr9:50606724-50607100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
182, 41
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr9:56453561-56453176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 96
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:648005-647602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
165, 46
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:3387920-3387545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:5501080-5500693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
165, 42
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:10144243-10144657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 95
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:17634602-17634996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
268, 91
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:20091268-20090889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 33
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:24887430-24887034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 26
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:51620665-51620273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 34
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:55795987-55795587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
104, 47
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:58979630-58979234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 91
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr9:63905375-63905786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
194, 91
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr9:18381088-18380696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 44
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr9:45285302-45285711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr9:7410011-7409604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr9:20942381-20942792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
167, 36
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr9:22638329-22637925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
153, 42
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr9:32676915-32676504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
151, 91
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr9:51566257-51566671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr9:56032099-56032489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
268, 23
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr9:61022840-61022446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr9:33598210-33597792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 44
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr9:17871878-17872291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 42
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr9:52619881-52619459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
194, 88
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr9:44822073-44822513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr9:50977017-50977446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
188, 29
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr9:13670865-13670445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 96
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr9:53257831-53258246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
188, 42
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr9:5327483-5327068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
166, 42
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr9:22318567-22318164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
166, 40
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr9:8997785-8997358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
268, 91
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr9:33100911-33101306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
268, 44
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr9:43623489-43623062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 91
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr9:20318349-20318773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 45
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr9:25964595-25965039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
165, 91
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr9:26278944-26279371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 86
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr9:41416580-41416133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr9:61544878-61544463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
167, 58
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr9:52689395-52689812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr9:40302896-40303335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
88, 109
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr9:12428277-12428710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
132, 91
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr9:15982849-15983310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 91
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr9:54997795-54998014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
149, 86
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr9:20989226-20989497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
225, 41
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr9:8534455-8534734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
164, 45
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr9:37069341-37069643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
248, 46
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr9:59386549-59386872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
267, 39
               

               
Conread position:
               
2-373
               

               
Cow position:
               
chr9:44831827-44832183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr9:57896897-57897247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
267, 34
               

               
Conread position:
               
2-395
               

               
Cow position:
               
chr9:8724024-8723638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chr9:52578305-52578696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 125
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr9:26404017-26403636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
166, 90
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr9:9753167-9753566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
164, 43
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr9:5442224-5441846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr9:23388450-23388845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 32
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr9:55118307-55117917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
184, 24
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr9:1751562-1751158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
164, 53
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr9:5433863-5433474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr9:6840239-6839821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
166, 77
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr9:13169440-13169836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 32
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr9:13994416-13993988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr9:34374701-34375098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 19
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr9:34697067-34697473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 45
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr9:36410124-36410521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
162, 90
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr9:21459929-21460333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr9:9573563-9573129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
2-432
               

               
Cow position:
               
chr9:38793247-38792821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr9:6192231-6192663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 95
               

               
Conread position:
               
2-438
               

               
Cow position:
               
chr9:20681179-20681601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
164, 12
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr9:46316561-46316857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr9:50080819-50081140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
266, 38
               

               
Conread position:
               
3-340
               

               
Cow position:
               
chr9:24997287-24997615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
3-341
               

               
Cow position:
               
chr9:44467122-44467442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
266, 89
               

               
Conread position:
               
3-374
               

               
Cow position:
               
chr9:766923-767286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
197, 33
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr9:63784696-63785070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
266, 38
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr9:9595727-9596115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 56
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr9:33823325-33822952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr9:1729449-1729856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
178, 40
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr9:30477557-30477943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
129, 40
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr9:53762928-53762526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 118
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr9:29006786-29006405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 19
               

               
Conread position:
               
4-409
               

               
Cow position:
               
chr9:27279544-27279135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 93
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chr9:36445848-36445515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
263, 38
               

               
Conread position:
               
5-377
               

               
Cow position:
               
chr9:20416284-20416653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
65, 94
               

               
Conread position:
               
5-396
               

               
Cow position:
               
chr9:10011025-10010654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
264, 36
               

               
Conread position:
               
5-406
               

               
Cow position:
               
chr9:48564320-48563910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
5-408
               

               
Cow position:
               
chr9:29092029-29091600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
161, 79
               

               
Conread position:
               
5-440
               

               
Cow position:
               
chr9:35027948-35028371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
182, 21
               

               
Conread position:
               
6-195
               

               
Cow position:
               
chr9:28969858-28970037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
6-398
               

               
Cow position:
               
chr9:26440572-26440975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
148, 86
               

               
Conread position:
               
7-395
               

               
Cow position:
               
chr9:64106130-64105746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
175, 26
               

               
Conread position:
               
7-409
               

               
Cow position:
               
chr9:41283250-41282840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 97
               

               
Conread position:
               
8-407
               

               
Cow position:
               
chr9:14974704-14975098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
241, 67
               

               
Conread position:
               
8-409
               

               
Cow position:
               
chr9:20406860-20406484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
261, 84
               

               
Conread position:
               
8-433
               

               
Cow position:
               
chr9:9199562-9199965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
9-409
               

               
Cow position:
               
chr9:55256326-55256720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 87
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr9:40105697-40105468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
156, 89
               

               
Conread position:
               
10-373
               

               
Cow position:
               
chr9:44833745-44834100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
169, 55
               

               
Conread position:
               
10-406
               

               
Cow position:
               
chr9:17799850-17799467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 23
               

               
Conread position:
               
10-483
               

               
Cow position:
               
chr9:32371541-32371997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
158, 35
               

               
Conread position:
               
11-225
               

               
Cow position:
               
chr9:6117928-6118133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
173, 26
               

               
Conread position:
               
12-385
               

               
Cow position:
               
chr9:17676903-17677260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
261, 33
               

               
Conread position:
               
12-403
               

               
Cow position:
               
chr9:48628250-48627858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 99
               

               
Conread position:
               
13-438
               

               
Cow position:
               
chr9:43207156-43207578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 79
               

               
Conread position:
               
14-411
               

               
Cow position:
               
chr9:58614709-58614324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
18-240
               

               
Cow position:
               
chr9:30195425-30195215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
18-399
               

               
Cow position:
               
chr9:9815630-9815252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
19-409
               

               
Cow position:
               
chr9:52637945-52638341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
86, 73
               

               
Conread position:
               
20-311
               

               
Cow position:
               
chr9:49417197-49416915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
162, 25
               

               
Conread position:
               
20-399
               

               
Cow position:
               
chr9:8998568-8998192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
146, 28
               

               
Conread position:
               
20-408
               

               
Cow position:
               
chr9:61303217-61302833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
20-411
               

               
Cow position:
               
chr9:52131231-52130838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
20-436
               

               
Cow position:
               
chr9:4512701-4512278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
146, 72
               

               
Conread position:
               
22-340
               

               
Cow position:
               
chr9:39681565-39681237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
22-349
               

               
Cow position:
               
chr9:62668464-62668140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
137, 73
               

               
Conread position:
               
24-313
               

               
Cow position:
               
chr9:19493253-19493541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
142, 73
               

               
Conread position:
               
24-408
               

               
Cow position:
               
chr9:62724749-62724372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
142, 41
               

               
Conread position:
               
25-340
               

               
Cow position:
               
chr9:3738013-3738325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
81, 123
               

               
Conread position:
               
26-402
               

               
Cow position:
               
chr9:4630343-4629945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 146
               

               
Conread position:
               
28-411
               

               
Cow position:
               
chr9:47500001-47500374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
138, 64
               

               
Conread position:
               
29-411
               

               
Cow position:
               
chr9:8548020-8547636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
152, 65
               

               
Conread position:
               
29-432
               

               
Cow position:
               
chr9:58447922-58448318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
137, 19
               

               
Conread position:
               
30-398
               

               
Cow position:
               
chr9:9552292-9551928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
5, 60
               

               
Conread position:
               
30-409
               

               
Cow position:
               
chr9:19067982-19067598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
30-411
               

               
Cow position:
               
chr9:59013130-59013514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 117
               

               
Conread position:
               
31-340
               

               
Cow position:
               
chr9:50543221-50543528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 53
               

               
Conread position:
               
33-333
               

               
Cow position:
               
chr9:40542320-40542042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
234, 52
               

               
Conread position:
               
33-334
               

               
Cow position:
               
chr9:7634473-7634176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
135, 24
               

               
Conread position:
               
33-391
               

               
Cow position:
               
chr9:824161-823806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
33-400
               

               
Cow position:
               
chr9:12225779-12226147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
33-407
               

               
Cow position:
               
chr9:34287001-34286629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 60
               

               
Conread position:
               
33-408
               

               
Cow position:
               
chr9:39011259-39011637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 35
               

               
Conread position:
               
33-410
               

               
Cow position:
               
chr9:11299490-11299845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 64
               

               
Conread position:
               
33-432
               

               
Cow position:
               
chr9:10650104-10650480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
271, 24
               

               
Conread position:
               
34-328
               

               
Cow position:
               
chr9:19714273-19713991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
34-397
               

               
Cow position:
               
chr9:25805034-25804669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 75
               

               
Conread position:
               
34-400
               

               
Cow position:
               
chr9:33218752-33219119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
94, 130
               

               
Conread position:
               
34-428
               

               
Cow position:
               
chr9:4340970-4341347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 62
               

               
Conread position:
               
34-437
               

               
Cow position:
               
chr9:40543122-40543517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
235, 58
               

               
Conread position:
               
37-434
               

               
Cow position:
               
chr9:12910202-12910595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
41-437
               

               
Cow position:
               
chr9:41728448-41728062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
43-400
               

               
Cow position:
               
chr9:30124111-30123768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 55
               

               
Conread position:
               
43-407
               

               
Cow position:
               
chr9:57274423-57274049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
43-409
               

               
Cow position:
               
chr9:19555565-19555218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
45-284
               

               
Cow position:
               
chr9:43871168-43870931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
45-408
               

               
Cow position:
               
chr9:9402987-9403341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
142, 52
               

               
Conread position:
               
45-409
               

               
Cow position:
               
chr9:34666607-34666281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
134, 51
               

               
Conread position:
               
47-409
               

               
Cow position:
               
chr9:20579419-20579759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
48-340
               

               
Cow position:
               
chr9:9405865-9406154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
117, 60
               

               
Conread position:
               
48-425
               

               
Cow position:
               
chr9:20900936-20901304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
49-323
               

               
Cow position:
               
chr9:34468400-34468664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
220, 43
               

               
Conread position:
               
52-399
               

               
Cow position:
               
chr9:8901042-8901390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
53-393
               

               
Cow position:
               
chr9:51720721-51721042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
113, 39
               

               
Conread position:
               
53-409
               

               
Cow position:
               
chr9:6340515-6340857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
217, 33
               

               
Conread position:
               
53-409
               

               
Cow position:
               
chr9:11168911-11168574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
113, 39
               

               
Conread position:
               
54-409
               

               
Cow position:
               
chr9:12281149-12280802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
55-333
               

               
Cow position:
               
chr9:49292970-49293237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
55-411
               

               
Cow position:
               
chr9:40215422-40215074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
111, 39
               

               
Conread position:
               
60-409
               

               
Cow position:
               
chr9:25557139-25556812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
60-434
               

               
Cow position:
               
chr9:44388833-44389191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
209, 32
               

               
Conread position:
               
61-409
               

               
Cow position:
               
chr9:47590806-47591155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
63-433
               

               
Cow position:
               
chr9:26477387-26477019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
65-340
               

               
Cow position:
               
chr9:17310386-17310665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
68-407
               

               
Cow position:
               
chr9:5456008-5456341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
103, 23
               

               
Conread position:
               
73-335
               

               
Cow position:
               
chr9:11303917-11304172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 30
               

               
Conread position:
               
76-435
               

               
Cow position:
               
chr9:10905647-10906018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
83-409
               

               
Cow position:
               
chr9:31216246-31215908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 69
               

               
Conread position:
               
84-409
               

               
Cow position:
               
chr9:9312021-9311688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
85-411
               

               
Cow position:
               
chr9:60394888-60395222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
11, 70
               

               
Conread position:
               
88-403
               

               
Cow position:
               
chr9:43159893-43159590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
90-409
               

               
Cow position:
               
chr9:8636826-8636507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 237
               

               
Conread position:
               
90-409
               

               
Cow position:
               
chr9:26344811-26345133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
91-298
               

               
Cow position:
               
chr9:43875561-43875777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
93-434
               

               
Cow position:
               
chr9:48730577-48730234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
95-399
               

               
Cow position:
               
chr9:1755997-1756312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
95-411
               

               
Cow position:
               
chr9:62940897-62941195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
174, 12
               

               
Conread position:
               
96-360
               

               
Cow position:
               
chr9:41394506-41394772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
173, 55
               

               
Conread position:
               
98-401
               

               
Cow position:
               
chr9:22289901-22289600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
99-333
               

               
Cow position:
               
chr9:62442434-62442194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
99-422
               

               
Cow position:
               
chr9:5263647-5263319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
101-432
               

               
Cow position:
               
chr9:33411433-33411764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
103-394
               

               
Cow position:
               
chr9:54493283-54492982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
105-408
               

               
Cow position:
               
chr9:6189232-6189533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 47
               

               
Conread position:
               
105-411
               

               
Cow position:
               
chr9:34410256-34410566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 47
               

               
Conread position:
               
106-434
               

               
Cow position:
               
chr9:48451836-48451516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
163, 39
               

               
Conread position:
               
107-300
               

               
Cow position:
               
chr9:41486103-41486302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
107-322
               

               
Cow position:
               
chr9:1867587-1867367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 44
               

               
Conread position:
               
107-337
               

               
Cow position:
               
chr9:52513315-52513546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
107-361
               

               
Cow position:
               
chr9:52839749-52840000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 45
               

               
Conread position:
               
107-394
               

               
Cow position:
               
chr9:62471806-62471521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
163, 43
               

               
Conread position:
               
107-407
               

               
Cow position:
               
chr9:4262955-4263258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
107-407
               

               
Cow position:
               
chr9:11123345-11123649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
107-407
               

               
Cow position:
               
chr9:34284085-34283786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
107-409
               

               
Cow position:
               
chr9:33114484-33114168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
107-411
               

               
Cow position:
               
chr9:20816000-20815693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 45
               

               
Conread position:
               
107-411
               

               
Cow position:
               
chr9:32348684-32348996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
107-432
               

               
Cow position:
               
chr9:38624492-38624818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
108-322
               

               
Cow position:
               
chr9:5219032-5219256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
108-359
               

               
Cow position:
               
chr9:6596098-6596346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
108-399
               

               
Cow position:
               
chr9:3573606-3573303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
108-403
               

               
Cow position:
               
chr9:7953036-7952737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
108-408
               

               
Cow position:
               
chr9:36628240-36627952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
39, 47
               

               
Conread position:
               
108-409
               

               
Cow position:
               
chr9:31359737-31359433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
108-411
               

               
Cow position:
               
chr9:43757674-43757371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 154
               

               
Conread position:
               
108-411
               

               
Cow position:
               
chr9:52267620-52267934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
108-415
               

               
Cow position:
               
chr9:40005612-40005300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
109-411
               

               
Cow position:
               
chr9:13743797-13744107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
109-435
               

               
Cow position:
               
chr9:44396795-44396462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
110-411
               

               
Cow position:
               
chr9:37934102-37934412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
118-414
               

               
Cow position:
               
chr9:29339198-29339488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
118-431
               

               
Cow position:
               
chr9:16121298-16120982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 101
               

               
Conread position:
               
122-403
               

               
Cow position:
               
chr9:58131841-58132113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
147, 30
               

               
Conread position:
               
123-409
               

               
Cow position:
               
chr9:33584561-33584855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
124-408
               

               
Cow position:
               
chr9:6952227-6951942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
126-397
               

               
Cow position:
               
chr9:20755637-20755918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
126-409
               

               
Cow position:
               
chr9:45728897-45728606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
127-411
               

               
Cow position:
               
chr9:53109370-53109077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
128-396
               

               
Cow position:
               
chr9:21080679-21080415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
129-409
               

               
Cow position:
               
chr9:3378868-3378591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
130-409
               

               
Cow position:
               
chr9:50125479-50125771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
131-408
               

               
Cow position:
               
chr9:23955870-23956147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
131-437
               

               
Cow position:
               
chr9:45445278-45444959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
135-323
               

               
Cow position:
               
chr9:28754929-28754732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
136-317
               

               
Cow position:
               
chr9:32981963-32982154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
138-430
               

               
Cow position:
               
chr9:49863444-49863748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
139-406
               

               
Cow position:
               
chr9:2037530-2037268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
141-394
               

               
Cow position:
               
chr9:29194919-29195188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
142-409
               

               
Cow position:
               
chr9:9460078-9459818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr9:17840580-17840850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr9:37199218-37198956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 176
               

               
Conread position:
               
157-409
               

               
Cow position:
               
chr9:32387903-32388156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
161-396
               

               
Cow position:
               
chr9:4241485-4241249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
162-408
               

               
Cow position:
               
chr9:9686336-9686588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
107, 31
               

               
Conread position:
               
163-408
               

               
Cow position:
               
chr9:41785288-41785051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
106, 156
               

               
Conread position:
               
163-409
               

               
Cow position:
               
chr9:61351262-61351518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
102, 16
               

               
Conread position:
               
163-410
               

               
Cow position:
               
chr9:8628839-8629084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
168-428
               

               
Cow position:
               
chr9:54664924-54664661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 11
               

               
Conread position:
               
168-433
               

               
Cow position:
               
chr9:5110931-5110661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
168-436
               

               
Cow position:
               
chr9:7611717-7611983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
168-437
               

               
Cow position:
               
chr9:12337973-12337701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
169-409
               

               
Cow position:
               
chr9:34024773-34024528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
169-412
               

               
Cow position:
               
chr9:52511186-52510941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
170-407
               

               
Cow position:
               
chr9:58452007-58452240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 108
               

               
Conread position:
               
170-437
               

               
Cow position:
               
chr9:63691814-63691541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 199
               

               
Conread position:
               
171-385
               

               
Cow position:
               
chr9:33542126-33541905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
171-399
               

               
Cow position:
               
chr9:54986084-54986322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
171-409
               

               
Cow position:
               
chr9:17276820-17277063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
171-439
               

               
Cow position:
               
chr9:6954178-6954454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
172-339
               

               
Cow position:
               
chr9:53750885-53751062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
172-408
               

               
Cow position:
               
chr9:59997967-59998200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
172-411
               

               
Cow position:
               
chr9:57131565-57131325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 150
               

               
Conread position:
               
174-330
               

               
Cow position:
               
chr9:54615236-54615391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 79
               

               
Conread position:
               
175-431
               

               
Cow position:
               
chr9:23970830-23971088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
89, 153
               

               
Conread position:
               
175-446
               

               
Cow position:
               
chr9:52030548-52030275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
176-385
               

               
Cow position:
               
chr9:59835021-59834825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
179-408
               

               
Cow position:
               
chr9:30012935-30012701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
179-408
               

               
Cow position:
               
chr9:63361657-63361881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
90, 160
               

               
Conread position:
               
179-409
               

               
Cow position:
               
chr9:52763700-52763924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
179-410
               

               
Cow position:
               
chr9:48017043-48016817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 143
               

               
Conread position:
               
179-411
               

               
Cow position:
               
chr9:47517261-47517024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
180-430
               

               
Cow position:
               
chr9:28156754-28156508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 115
               

               
Conread position:
               
181-337
               

               
Cow position:
               
chr9:19758779-19758621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
181-411
               

               
Cow position:
               
chr9:47214485-47214722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
88, 232
               

               
Conread position:
               
181-436
               

               
Cow position:
               
chr9:13945666-13945402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
182-334
               

               
Cow position:
               
chr9:39758577-39758427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 118
               

               
Conread position:
               
182-396
               

               
Cow position:
               
chr9:41964675-41964890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 188
               

               
Conread position:
               
182-408
               

               
Cow position:
               
chr9:50382269-50382488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
120, 71
               

               
Conread position:
               
182-409
               

               
Cow position:
               
chr9:5104344-5104581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
87, 80
               

               
Conread position:
               
182-409
               

               
Cow position:
               
chr9:33347431-33347652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 118
               

               
Conread position:
               
182-433
               

               
Cow position:
               
chr9:44584653-44584404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 145
               

               
Conread position:
               
183-376
               

               
Cow position:
               
chr9:22466830-22466639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
86, 120
               

               
Conread position:
               
183-408
               

               
Cow position:
               
chr9:8992121-8992349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 145
               

               
Conread position:
               
183-408
               

               
Cow position:
               
chr9:52518765-52518991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
185-295
               

               
Cow position:
               
chr9:6685955-6685844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
186-435
               

               
Cow position:
               
chr9:11380596-11380846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
83, 23
               

               
Conread position:
               
186-435
               

               
Cow position:
               
chr9:52754800-52755050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
83, 54
               

               
Conread position:
               
188-403
               

               
Cow position:
               
chr9:7805908-7806119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 139
               

               
Conread position:
               
188-409
               

               
Cow position:
               
chr9:22440429-22440644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
188-409
               

               
Cow position:
               
chr9:33151795-33151578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 139
               

               
Conread position:
               
188-409
               

               
Cow position:
               
chr9:35547321-35547094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
188-411
               

               
Cow position:
               
chr9:14738302-14738079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 156
               

               
Conread position:
               
188-430
               

               
Cow position:
               
chr9:20451575-20451821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 230
               

               
Conread position:
               
188-437
               

               
Cow position:
               
chr9:12398651-12398398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
81, 229
               

               
Conread position:
               
188-439
               

               
Cow position:
               
chr9:25375683-25375934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 131
               

               
Conread position:
               
189-337
               

               
Cow position:
               
chr9:16137290-16137440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
76, 132
               

               
Conread position:
               
189-411
               

               
Cow position:
               
chr9:39709909-39709680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
190-340
               

               
Cow position:
               
chr9:6293646-6293493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
190-397
               

               
Cow position:
               
chr9:21387470-21387271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
190-407
               

               
Cow position:
               
chr9:44758881-44759096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
191-409
               

               
Cow position:
               
chr9:59699497-59699723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 194
               

               
Conread position:
               
193-336
               

               
Cow position:
               
chr9:55354659-55354514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
198-403
               

               
Cow position:
               
chr9:11098413-11098616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
198-411
               

               
Cow position:
               
chr9:27345541-27345762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
198-435
               

               
Cow position:
               
chr9:4181506-4181743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 187
               

               
Conread position:
               
199-390
               

               
Cow position:
               
chr9:20637415-20637223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
70, 78
               

               
Conread position:
               
199-396
               

               
Cow position:
               
chr9:22165671-22165875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
199-400
               

               
Cow position:
               
chr9:21292365-21292569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
199-403
               

               
Cow position:
               
chr9:39149121-39148917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
70, 128
               

               
Conread position:
               
199-407
               

               
Cow position:
               
chr9:5342206-5342415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
199-409
               

               
Cow position:
               
chr9:12786431-12786648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
199-409
               

               
Cow position:
               
chr9:26102765-26102561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
199-411
               

               
Cow position:
               
chr9:35832577-35832788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 128
               

               
Conread position:
               
199-439
               

               
Cow position:
               
chr9:36458043-36457793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
200-409
               

               
Cow position:
               
chr9:3924484-3924285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
201-403
               

               
Cow position:
               
chr9:34034295-34034105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
201-408
               

               
Cow position:
               
chr9:42586516-42586718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 127
               

               
Conread position:
               
201-410
               

               
Cow position:
               
chr9:34484635-34484418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
202-394
               

               
Cow position:
               
chr9:48115718-48115527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 123
               

               
Conread position:
               
210-409
               

               
Cow position:
               
chr9:22447263-22447465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 177
               

               
Conread position:
               
210-411
               

               
Cow position:
               
chr9:43202365-43202166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 111
               

               
Conread position:
               
211-411
               

               
Cow position:
               
chr9:43353007-43352801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
211-413
               

               
Cow position:
               
chr9:34707282-34707485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 115
               

               
Conread position:
               
212-409
               

               
Cow position:
               
chr9:42508861-42508657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
212-411
               

               
Cow position:
               
chr9:40603697-40603494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
214-409
               

               
Cow position:
               
chr9:2397834-2397639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 130
               

               
Conread position:
               
214-409
               

               
Cow position:
               
chr9:59897616-59897425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
215-396
               

               
Cow position:
               
chr9:44944452-44944631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
215-408
               

               
Cow position:
               
chr9:12773716-12773524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
54, 89
               

               
Conread position:
               
216-400
               

               
Cow position:
               
chr9:26394325-26394510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
216-411
               

               
Cow position:
               
chr9:19718315-19718507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
217-403
               

               
Cow position:
               
chr9:24079326-24079140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
217-408
               

               
Cow position:
               
chr9:7543235-7543427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 114
               

               
Conread position:
               
217-409
               

               
Cow position:
               
chr9:23840370-23840576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
217-409
               

               
Cow position:
               
chr9:43680144-43679949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
217-411
               

               
Cow position:
               
chr9:31344583-31344783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
219-396
               

               
Cow position:
               
chr9:64310757-64310937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
219-435
               

               
Cow position:
               
chr9:48046563-48046339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
24, 203
               

               
Conread position:
               
220-408
               

               
Cow position:
               
chr9:32878075-32877888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
220-411
               

               
Cow position:
               
chr9:34276189-34276386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
220-429
               

               
Cow position:
               
chr9:44314685-44314897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 198
               

               
Conread position:
               
220-431
               

               
Cow position:
               
chr9:29984485-29984271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 198
               

               
Conread position:
               
220-432
               

               
Cow position:
               
chr9:41644729-41644945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
49, 199
               

               
Conread position:
               
220-437
               

               
Cow position:
               
chr9:5186846-5187058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chr9:1712686-1712866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
223-396
               

               
Cow position:
               
chr9:52998362-52998536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 162
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr9:55807649-55807465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
223-411
               

               
Cow position:
               
chr9:9557704-9557510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
223-411
               

               
Cow position:
               
chr9:40984523-40984330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
223-426
               

               
Cow position:
               
chr9:8613193-8613401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 158
               

               
Conread position:
               
223-436
               

               
Cow position:
               
chr9:41470080-41470300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
224-409
               

               
Cow position:
               
chr9:32052293-32052105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
224-448
               

               
Cow position:
               
chr9:40221169-40221397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 113
               

               
Conread position:
               
225-400
               

               
Cow position:
               
chr9:32773229-32773060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
44, 102
               

               
Conread position:
               
225-437
               

               
Cow position:
               
chr9:32662015-32662235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
228-409
               

               
Cow position:
               
chr9:49680127-49679939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
228-428
               

               
Cow position:
               
chr9:17027210-17027009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
229-411
               

               
Cow position:
               
chr9:28315441-28315251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
231-403
               

               
Cow position:
               
chr9:48900826-48901000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 148
               

               
Conread position:
               
231-410
               

               
Cow position:
               
chr9:60741174-60741356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
231-437
               

               
Cow position:
               
chr9:9091095-9091307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
232-437
               

               
Cow position:
               
chr9:16216990-16216779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
235-396
               

               
Cow position:
               
chr9:11209439-11209611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
238-381
               

               
Cow position:
               
chr9:54630313-54630170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
238-403
               

               
Cow position:
               
chr9:61300974-61301142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
238-409
               

               
Cow position:
               
chr9:54677267-54677086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
239-411
               

               
Cow position:
               
chr9:45740140-45740316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 165
               

               
Conread position:
               
241-438
               

               
Cow position:
               
chr9:11447808-11448007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
28, 44
               

               
Conread position:
               
242-392
               

               
Cow position:
               
chr9:44261507-44261654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
242-403
               

               
Cow position:
               
chr9:11873305-11873460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
242-406
               

               
Cow position:
               
chr9:34423621-34423450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-410
               

               
Cow position:
               
chr9:26388207-26388044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
242-411
               

               
Cow position:
               
chr9:34760365-34760539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
242-430
               

               
Cow position:
               
chr9:61019363-61019556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 177
               

               
Conread position:
               
244-408
               

               
Cow position:
               
chr9:44918283-44918448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
247-409
               

               
Cow position:
               
chr9:20828900-20828733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 140
               

               
Conread position:
               
247-411
               

               
Cow position:
               
chr9:64140565-64140737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
247-428
               

               
Cow position:
               
chr9:8645260-8645077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 149
               

               
Conread position:
               
248-400
               

               
Cow position:
               
chr9:12269023-12268873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
248-409
               

               
Cow position:
               
chr9:9495149-9494988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
248-409
               

               
Cow position:
               
chr9:53323791-53323959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
248-411
               

               
Cow position:
               
chr9:14519387-14519548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
253-407
               

               
Cow position:
               
chr9:1917967-1917813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
256-435
               

               
Cow position:
               
chr9:6237508-6237687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
256-447
               

               
Cow position:
               
chr9:19656991-19657183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
257-406
               

               
Cow position:
               
chr9:61909372-61909216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
259-408
               

               
Cow position:
               
chr9:30194993-30194841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
261-430
               

               
Cow position:
               
chr9:388213-388382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
274-409
               

               
Cow position:
               
chr9:21816497-21816360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
305-434
               

               
Cow position:
               
chr9:51609208-51609083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
315-409
               

               
Cow position:
               
chr9:26086646-26086552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.