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Cow genome map

           
Conread name:
           
Ova1-OVRM10133B11
        

               
Conread position:
               
1-144
               

               
Cow position:
               
chrX:6639952-6640085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chrX:29509617-29509467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chrX:38439301-38439514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
165, 96
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chrX:40647804-40648027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chrX:19015269-19015487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
184, 27
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chrX:42461919-42461694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
159, 64
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chrX:42874804-42875033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
165, 97
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chrX:7718681-7718909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chrX:41167138-41166902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
165, 42
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:35609813-35610053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
165, 46
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:36961462-36961702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
165, 91
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:41743739-41743981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
165, 42
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chrX:25338006-25338257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
167, 102
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chrX:26876056-26875811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
167, 34
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chrX:6234622-6234376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
165, 40
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:678741-678481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:24105453-24105702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chrX:34401824-34402095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chrX:37843547-37843813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chrX:11856255-11856530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:26625850-26625563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chrX:7571733-7572016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
167, 47
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chrX:46722914-46722612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
162, 91
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chrX:917545-917237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chrX:37574683-37574971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
185, 34
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:2467706-2468017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
178, 90
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:11073362-11073052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:17662770-17662458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
164, 91
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:39558520-39558210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chrX:37232236-37232547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 105
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chrX:6278679-6278354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
165, 90
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chrX:42470110-42469792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
236, 40
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:31311852-31312182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 95
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:23091708-23092027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
262, 44
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:37836414-37836734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
164, 58
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:6690421-6690107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
170, 40
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chrX:8797074-8797405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 92
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chrX:17541790-17542116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
177, 65
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chrX:41884591-41884256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 96
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chrX:42235707-42235369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:619181-618851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 119
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:13382152-13382482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
167, 91
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:17725801-17726133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 42
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:18695093-18694771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
166, 44
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:23785480-23785805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
305, 93
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:27394187-27393869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
184, 44
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:35388079-35387769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
264, 96
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:36067846-36068176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
165, 46
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:43730388-43730065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
157, 58
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chrX:45414473-45414143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
188, 42
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chrX:14599356-14599704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
164, 95
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chrX:32171055-32170708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
163, 22
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:34663017-34662653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
165, 29
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chrX:13647957-13647586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 29
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chrX:21672378-21672761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
190, 91
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chrX:28878332-28877958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
164, 31
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chrX:35542718-35543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 96
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:12309562-12309173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 74
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chrX:47344121-47344513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
167, 69
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chrX:34238547-34238938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
189, 42
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chrX:841985-842371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chrX:8730906-8731310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
60, 94
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chrX:10831670-10831265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
164, 85
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chrX:15596864-15597244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
268, 92
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chrX:41192511-41192905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chrX:13868520-13868921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chrX:48010421-48010822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
159, 89
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chrX:1176156-1175772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
184, 91
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chrX:1055563-1055162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
165, 39
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chrX:9651219-9650808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 149
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chrX:11939100-11938734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
226, 34
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chrX:20151677-20152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chrX:21642653-21642262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
167, 46
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chrX:27514695-27515078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
79, 92
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chrX:46532683-46532271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 89
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chrX:1616221-1615836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 91
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:1499496-1499877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
165, 40
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:6544083-6544468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 34
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:15007324-15006936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
165, 17
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:15485800-15485410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
231, 44
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:17794812-17795202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 44
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:22074627-22075018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 42
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:23497838-23497474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
268, 44
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:29602006-29601606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 59
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:35383193-35382819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
303, 88
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chrX:37781291-37780889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 99
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chrX:34543614-34544011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 7
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chrX:26492829-26493234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
155, 93
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:8869582-8869176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:27705416-27705815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
165, 25
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:34411667-34412076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 79
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:34532355-34532739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
164, 34
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:42086688-42087054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
268, 46
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:42381273-42380884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 54
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:44054628-44055031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 42
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:5017581-5017187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
167, 42
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:10252356-10251973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 23
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:11633505-11633911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 42
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:11655915-11656307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 97
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:14884135-14883728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 95
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:31250216-31250619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
166, 67
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:32020295-32019904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
268, 44
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:34376782-34377168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 52
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:34441625-34441224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
165, 42
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:36060978-36061388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
153, 91
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:38094699-38094297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:38218534-38218942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 149
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:42247357-42246952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 58
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:45430190-45429802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:46072994-46072601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
165, 64
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chrX:46587644-46588049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 46
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:10866041-10865640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:4633024-4632623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 33
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:9201373-9201774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 95
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:13177638-13177253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 44
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:18485621-18486034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
88, 112
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:22387421-22387012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:25035561-25035151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 93
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:27442729-27442307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
170, 73
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:27509193-27508793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
164, 44
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:31489338-31489752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 68
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:34554555-34554955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
167, 37
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chrX:41526697-41526299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 19
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chrX:27174822-27175238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 42
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chrX:13912907-13913317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chrX:31949104-31948688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chrX:13191717-13191317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
268, 47
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chrX:32420045-32420458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chrX:48236638-48237066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chrX:25816069-25815650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
116, 34
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chrX:41238539-41238112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chrX:33466440-33466875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chrX:41790618-41790177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
99, 58
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chrX:23563970-23563537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 91
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chrX:27446515-27446935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 59
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chrX:30963045-30962622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
170, 29
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chrX:17231561-17231991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chrX:20887818-20887393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
178, 15
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chrX:35885903-35885476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:3579771-3580204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 42
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:7178734-7179139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
124, 23
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:21064113-21064543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:33000730-33001153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:38935108-38935536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 91
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chrX:42492688-42492262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 44
               

               
Conread position:
               
2-156
               

               
Cow position:
               
chrX:41403800-41403945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
2-156
               

               
Cow position:
               
chrX:41410348-41410493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
2-218
               

               
Cow position:
               
chrX:30833018-30832819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chrX:24424560-24424249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 46
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chrX:46433310-46433647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
164, 92
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chrX:43780025-43779649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chrX:22482861-22482466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 54
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chrX:30922009-30922396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 33
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chrX:6407376-6407770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
2-408
               

               
Cow position:
               
chrX:31442994-31442611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 43
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chrX:9252350-9251934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 21
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chrX:12290563-12290947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
164, 39
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chrX:24366006-24365593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
46, 95
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chrX:47484444-47484029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 90
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chrX:33855405-33854996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chrX:7721812-7722206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 96
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chrX:20340063-20339637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 26
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chrX:9855129-9855342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chrX:9953970-9954183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:27680230-27680504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
163, 44
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:42171471-42171140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
174, 94
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chrX:5872142-5872473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
167, 91
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chrX:45174673-45175022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chrX:22821876-22822265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 89
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chrX:35273181-35273586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 105
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chrX:4279286-4278904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
86, 106
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chrX:32820857-32821257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 42
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chrX:27145452-27145822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 42
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chrX:38642086-38642465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 94
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chrX:7351124-7351529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
168, 93
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chrX:8925534-8925907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
163, 38
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chrX:34792482-34792095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 61
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chrX:4398954-4399349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 94
               

               
Conread position:
               
3-420
               

               
Cow position:
               
chrX:38963935-38964336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
128, 42
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chrX:45598775-45598357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
168, 81
               

               
Conread position:
               
3-436
               

               
Cow position:
               
chrX:47873513-47873079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
163, 60
               

               
Conread position:
               
3-438
               

               
Cow position:
               
chrX:31436311-31436727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 32
               

               
Conread position:
               
3-443
               

               
Cow position:
               
chrX:12980002-12979571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 92
               

               
Conread position:
               
4-384
               

               
Cow position:
               
chrX:14955938-14955564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
182, 18
               

               
Conread position:
               
4-411
               

               
Cow position:
               
chrX:25208017-25207630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 90
               

               
Conread position:
               
4-437
               

               
Cow position:
               
chrX:22921143-22921579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
5-339
               

               
Cow position:
               
chrX:33493605-33493933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 91
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chrX:40269315-40269651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 91
               

               
Conread position:
               
5-403
               

               
Cow position:
               
chrX:35224129-35224499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
5-411
               

               
Cow position:
               
chrX:38549279-38549678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 87
               

               
Conread position:
               
5-418
               

               
Cow position:
               
chrX:40035614-40035199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
5-423
               

               
Cow position:
               
chrX:37489561-37489972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
166, 36
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chrX:30133498-30133068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 92
               

               
Conread position:
               
6-403
               

               
Cow position:
               
chrX:29542387-29542005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 29
               

               
Conread position:
               
6-430
               

               
Cow position:
               
chrX:27432087-27431675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
8-334
               

               
Cow position:
               
chrX:30543457-30543134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
144, 84
               

               
Conread position:
               
8-373
               

               
Cow position:
               
chrX:24288099-24287740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
163, 61
               

               
Conread position:
               
8-398
               

               
Cow position:
               
chrX:7863737-7863362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
261, 45
               

               
Conread position:
               
8-406
               

               
Cow position:
               
chrX:8917226-8917621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
176, 84
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chrX:23514180-23513866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
157, 26
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chrX:14275901-14275549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 18
               

               
Conread position:
               
9-403
               

               
Cow position:
               
chrX:44396856-44397234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
162, 39
               

               
Conread position:
               
10-409
               

               
Cow position:
               
chrX:5638330-5637950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
191, 49
               

               
Conread position:
               
10-409
               

               
Cow position:
               
chrX:37072241-37072615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 13
               

               
Conread position:
               
11-349
               

               
Cow position:
               
chrX:878536-878214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
166, 28
               

               
Conread position:
               
11-388
               

               
Cow position:
               
chrX:41068564-41068928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
157, 21
               

               
Conread position:
               
11-409
               

               
Cow position:
               
chrX:6413881-6414261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 37
               

               
Conread position:
               
11-411
               

               
Cow position:
               
chrX:32329994-32330403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
155, 48
               

               
Conread position:
               
11-432
               

               
Cow position:
               
chrX:27206636-27207045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 19
               

               
Conread position:
               
13-403
               

               
Cow position:
               
chrX:21986459-21986078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
15-409
               

               
Cow position:
               
chrX:36355956-36356333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
18-409
               

               
Cow position:
               
chrX:35822184-35822560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
153, 7
               

               
Conread position:
               
18-437
               

               
Cow position:
               
chrX:11844403-11843979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
20-396
               

               
Cow position:
               
chrX:27227969-27228345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 21
               

               
Conread position:
               
20-409
               

               
Cow position:
               
chrX:10959555-10959187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
147, 75
               

               
Conread position:
               
22-408
               

               
Cow position:
               
chrX:20584166-20584540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
25-340
               

               
Cow position:
               
chrX:29680409-29680103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
175, 18
               

               
Conread position:
               
26-274
               

               
Cow position:
               
chrX:12405539-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 64
               

               
Conread position:
               
26-376
               

               
Cow position:
               
chrX:27301717-27302073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
26-409
               

               
Cow position:
               
chrX:5118654-5118269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 71
               

               
Conread position:
               
30-409
               

               
Cow position:
               
chrX:41122922-41123273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
159, 35
               

               
Conread position:
               
30-411
               

               
Cow position:
               
chrX:44040042-44040408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
33-259
               

               
Cow position:
               
chrX:13785508-13785286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
135, 65
               

               
Conread position:
               
33-336
               

               
Cow position:
               
chrX:40557826-40557523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
134, 64
               

               
Conread position:
               
33-371
               

               
Cow position:
               
chrX:4515514-4515879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
33-437
               

               
Cow position:
               
chrX:4996456-4996844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
227, 58
               

               
Conread position:
               
34-338
               

               
Cow position:
               
chrX:42873249-42873540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
130, 5
               

               
Conread position:
               
34-377
               

               
Cow position:
               
chrX:5919352-5919689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
104, 63
               

               
Conread position:
               
34-408
               

               
Cow position:
               
chrX:34313889-34314249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 39
               

               
Conread position:
               
34-409
               

               
Cow position:
               
chrX:16762622-16762997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
134, 64
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chrX:47280076-47279706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
196, 62
               

               
Conread position:
               
34-411
               

               
Cow position:
               
chrX:29723597-29723982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
35-409
               

               
Cow position:
               
chrX:11614556-11614904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
131, 59
               

               
Conread position:
               
37-340
               

               
Cow position:
               
chrX:9365815-9365517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 14
               

               
Conread position:
               
38-285
               

               
Cow position:
               
chrX:27685107-27685350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 54
               

               
Conread position:
               
39-340
               

               
Cow position:
               
chrX:616401-616101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
127, 58
               

               
Conread position:
               
39-395
               

               
Cow position:
               
chrX:4768606-4768943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
41-411
               

               
Cow position:
               
chrX:41027020-41027392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
125, 51
               

               
Conread position:
               
42-411
               

               
Cow position:
               
chrX:31729307-31729669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
124, 50
               

               
Conread position:
               
43-282
               

               
Cow position:
               
chrX:15814952-15815182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 49
               

               
Conread position:
               
43-291
               

               
Cow position:
               
chrX:11455193-11454942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 52
               

               
Conread position:
               
43-406
               

               
Cow position:
               
chrX:41870938-41871283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 107
               

               
Conread position:
               
43-407
               

               
Cow position:
               
chrX:36393482-36393114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
43-410
               

               
Cow position:
               
chrX:34565148-34565515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
45-408
               

               
Cow position:
               
chrX:7695615-7695991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
48-322
               

               
Cow position:
               
chrX:19273853-19273567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
48-391
               

               
Cow position:
               
chrX:31294687-31294358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
221, 45
               

               
Conread position:
               
48-399
               

               
Cow position:
               
chrX:45875261-45875609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 44
               

               
Conread position:
               
48-400
               

               
Cow position:
               
chrX:40685461-40685109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
48-409
               

               
Cow position:
               
chrX:43115021-43115377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
48-436
               

               
Cow position:
               
chrX:45976790-45977180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
118, 46
               

               
Conread position:
               
49-320
               

               
Cow position:
               
chrX:29120917-29121185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chrX:7710672-7710382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
52-446
               

               
Cow position:
               
chrX:34505173-34504788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 44
               

               
Conread position:
               
53-409
               

               
Cow position:
               
chrX:40826880-40826521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
54-392
               

               
Cow position:
               
chrX:27946183-27945841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
112, 38
               

               
Conread position:
               
55-432
               

               
Cow position:
               
chrX:18111267-18111632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
214, 37
               

               
Conread position:
               
56-428
               

               
Cow position:
               
chrX:40320283-40320655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
126, 36
               

               
Conread position:
               
58-403
               

               
Cow position:
               
chrX:26881688-26881339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 39
               

               
Conread position:
               
59-432
               

               
Cow position:
               
chrX:4403195-4403570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
61-409
               

               
Cow position:
               
chrX:4296945-4296595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
62-416
               

               
Cow position:
               
chrX:24331662-24332013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
104, 28
               

               
Conread position:
               
64-385
               

               
Cow position:
               
chrX:4992130-4991819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
66-403
               

               
Cow position:
               
chrX:42927931-42927607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 32
               

               
Conread position:
               
67-429
               

               
Cow position:
               
chrX:17949601-17949245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
82-407
               

               
Cow position:
               
chrX:20168452-20168782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
88-408
               

               
Cow position:
               
chrX:2523778-2523472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
90-400
               

               
Cow position:
               
chrX:1466063-1466383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
94-409
               

               
Cow position:
               
chrX:30338039-30337725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
175, 9
               

               
Conread position:
               
94-411
               

               
Cow position:
               
chrX:20957154-20957471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
176, 8
               

               
Conread position:
               
97-378
               

               
Cow position:
               
chrX:169632-169343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
98-434
               

               
Cow position:
               
chrX:34540596-34540937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
99-406
               

               
Cow position:
               
chrX:29050156-29050468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
104-411
               

               
Cow position:
               
chrX:34315437-34315757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
105-341
               

               
Cow position:
               
chrX:5135609-5135362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
106-437
               

               
Cow position:
               
chrX:22283749-22284096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
107-337
               

               
Cow position:
               
chrX:18273140-18272901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
64, 45
               

               
Conread position:
               
107-356
               

               
Cow position:
               
chrX:16575041-16575289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
162, 43
               

               
Conread position:
               
107-409
               

               
Cow position:
               
chrX:10859380-10859084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 43
               

               
Conread position:
               
107-409
               

               
Cow position:
               
chrX:33654923-33654614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
107-409
               

               
Cow position:
               
chrX:35590839-35590529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
107-411
               

               
Cow position:
               
chrX:6559527-6559222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
107-411
               

               
Cow position:
               
chrX:12095855-12095540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
107-411
               

               
Cow position:
               
chrX:27261106-27261421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 27
               

               
Conread position:
               
107-411
               

               
Cow position:
               
chrX:40680529-40680846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 49
               

               
Conread position:
               
107-433
               

               
Cow position:
               
chrX:48071079-48071413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
107-436
               

               
Cow position:
               
chrX:161331-161656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
108-313
               

               
Cow position:
               
chrX:11851750-11851548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
138, 44
               

               
Conread position:
               
108-399
               

               
Cow position:
               
chrX:10516175-10516473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
108-403
               

               
Cow position:
               
chrX:29229929-29230230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
161, 44
               

               
Conread position:
               
108-403
               

               
Cow position:
               
chrX:47345253-47345553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
164, 44
               

               
Conread position:
               
108-406
               

               
Cow position:
               
chrX:34837135-34836846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 21
               

               
Conread position:
               
108-408
               

               
Cow position:
               
chrX:918808-918501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
108-409
               

               
Cow position:
               
chrX:38560476-38560779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
108-409
               

               
Cow position:
               
chrX:42855374-42855691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 86
               

               
Conread position:
               
108-409
               

               
Cow position:
               
chrX:45648792-45649099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
109-393
               

               
Cow position:
               
chrX:46291058-46291354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
109-403
               

               
Cow position:
               
chrX:39220000-39220311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
109-407
               

               
Cow position:
               
chrX:13923792-13924088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
160, 43
               

               
Conread position:
               
110-339
               

               
Cow position:
               
chrX:23562556-23562788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
110-361
               

               
Cow position:
               
chrX:23113199-23113464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
110-408
               

               
Cow position:
               
chrX:22115396-22115086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
110-411
               

               
Cow position:
               
chrX:5134394-5134705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
110-426
               

               
Cow position:
               
chrX:36866092-36866419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
111-408
               

               
Cow position:
               
chrX:4153113-4152816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
111-409
               

               
Cow position:
               
chrX:13121857-13122173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
115-409
               

               
Cow position:
               
chrX:12437343-12437054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
121-411
               

               
Cow position:
               
chrX:7648469-7648182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
148, 31
               

               
Conread position:
               
124-316
               

               
Cow position:
               
chrX:12082390-12082190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
124-385
               

               
Cow position:
               
chrX:2675022-2674752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
124-409
               

               
Cow position:
               
chrX:48003782-48004075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
125-437
               

               
Cow position:
               
chrX:8493013-8493324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
144, 25
               

               
Conread position:
               
126-396
               

               
Cow position:
               
chrX:30840481-30840757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
126-409
               

               
Cow position:
               
chrX:296332-296621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
127-403
               

               
Cow position:
               
chrX:1088198-1087925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
127-408
               

               
Cow position:
               
chrX:4109128-4109413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
129-322
               

               
Cow position:
               
chrX:46429881-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
131-396
               

               
Cow position:
               
chrX:1360028-1360298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
132-411
               

               
Cow position:
               
chrX:19469563-19469283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
132-411
               

               
Cow position:
               
chrX:40108573-40108281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
133-363
               

               
Cow position:
               
chrX:32623511-32623753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
133-397
               

               
Cow position:
               
chrX:46022729-46022992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 17
               

               
Conread position:
               
135-408
               

               
Cow position:
               
chrX:35985764-35986043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
136-323
               

               
Cow position:
               
chrX:25328659-25328474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
133, 16
               

               
Conread position:
               
142-437
               

               
Cow position:
               
chrX:27306405-27306698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chrX:36392232-36391956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
150-321
               

               
Cow position:
               
chrX:4616043-4615872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
150-403
               

               
Cow position:
               
chrX:27075087-27074828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
151-403
               

               
Cow position:
               
chrX:24749048-24749310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
152-408
               

               
Cow position:
               
chrX:11326138-11325881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 174
               

               
Conread position:
               
152-411
               

               
Cow position:
               
chrX:19394514-19394787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
158-409
               

               
Cow position:
               
chrX:42432538-42432285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
161-409
               

               
Cow position:
               
chrX:3806660-3806907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
108, 29
               

               
Conread position:
               
163-409
               

               
Cow position:
               
chrX:4289418-4289663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
163-439
               

               
Cow position:
               
chrX:6599805-6599516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 250
               

               
Conread position:
               
167-409
               

               
Cow position:
               
chrX:38587859-38587616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
168-398
               

               
Cow position:
               
chrX:1552954-1553188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
168-399
               

               
Cow position:
               
chrX:4645928-4645695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
168-403
               

               
Cow position:
               
chrX:22393002-22392765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
12, 153
               

               
Conread position:
               
168-408
               

               
Cow position:
               
chrX:42893908-42894150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
169-409
               

               
Cow position:
               
chrX:40336894-40337140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
169-410
               

               
Cow position:
               
chrX:26843283-26843036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
169-432
               

               
Cow position:
               
chrX:12972666-12972930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
170-411
               

               
Cow position:
               
chrX:35275973-35276218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
170-415
               

               
Cow position:
               
chrX:44202063-44201809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
170-432
               

               
Cow position:
               
chrX:16836300-16836041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
171-337
               

               
Cow position:
               
chrX:40532056-40531889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
171-385
               

               
Cow position:
               
chrX:19965410-19965190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
171-396
               

               
Cow position:
               
chrX:44796369-44796600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
171-398
               

               
Cow position:
               
chrX:45403559-45403327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
171-402
               

               
Cow position:
               
chrX:47061384-47061608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
171-409
               

               
Cow position:
               
chrX:48532301-48532543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
171-410
               

               
Cow position:
               
chrX:44591075-44590830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
171-410
               

               
Cow position:
               
chrX:48397841-48397595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
171-411
               

               
Cow position:
               
chrX:43008595-43008842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
171-439
               

               
Cow position:
               
chrX:47255435-47255708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
172-435
               

               
Cow position:
               
chrX:44834664-44834400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
173-409
               

               
Cow position:
               
chrX:41941612-41941852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
96, 19
               

               
Conread position:
               
173-436
               

               
Cow position:
               
chrX:26979801-26979534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
132, 95
               

               
Conread position:
               
174-404
               

               
Cow position:
               
chrX:6007664-6007900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
176-409
               

               
Cow position:
               
chrX:45391721-45391484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 6
               

               
Conread position:
               
176-409
               

               
Cow position:
               
chrX:45699980-45699751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 64
               

               
Conread position:
               
176-439
               

               
Cow position:
               
chrX:36109624-36109356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
177-409
               

               
Cow position:
               
chrX:40574950-40574714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 66
               

               
Conread position:
               
178-392
               

               
Cow position:
               
chrX:32574310-32574528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
179-408
               

               
Cow position:
               
chrX:28940236-28940472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
179-411
               

               
Cow position:
               
chrX:5063246-5063467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
180-409
               

               
Cow position:
               
chrX:2935952-2936182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 148
               

               
Conread position:
               
180-424
               

               
Cow position:
               
chrX:23335977-23335732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
181-410
               

               
Cow position:
               
chrX:32208826-32208597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 95
               

               
Conread position:
               
182-408
               

               
Cow position:
               
chrX:11763005-11762783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 140
               

               
Conread position:
               
182-408
               

               
Cow position:
               
chrX:39290356-39290583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 122
               

               
Conread position:
               
182-409
               

               
Cow position:
               
chrX:17292951-17293185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
182-409
               

               
Cow position:
               
chrX:17956690-17956918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
183-399
               

               
Cow position:
               
chrX:4466964-4467170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
6, 121
               

               
Conread position:
               
183-426
               

               
Cow position:
               
chrX:16984639-16984882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 143
               

               
Conread position:
               
183-428
               

               
Cow position:
               
chrX:42479831-42480075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
86, 136
               

               
Conread position:
               
184-373
               

               
Cow position:
               
chrX:17704388-17704581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
188-337
               

               
Cow position:
               
chrX:29501878-29501730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
188-408
               

               
Cow position:
               
chrX:17524381-17524155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
81, 139
               

               
Conread position:
               
188-433
               

               
Cow position:
               
chrX:24336074-24335822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
189-431
               

               
Cow position:
               
chrX:32943072-32942828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
80, 191
               

               
Conread position:
               
189-433
               

               
Cow position:
               
chrX:27668954-27668708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 138
               

               
Conread position:
               
197-376
               

               
Cow position:
               
chrX:41862376-41862556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
197-395
               

               
Cow position:
               
chrX:30823999-30824200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
198-398
               

               
Cow position:
               
chrX:3494809-3494603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
198-427
               

               
Cow position:
               
chrX:29467765-29467537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
199-403
               

               
Cow position:
               
chrX:1122529-1122324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
199-403
               

               
Cow position:
               
chrX:38301823-38302037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
199-406
               

               
Cow position:
               
chrX:42836195-42836407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
199-407
               

               
Cow position:
               
chrX:32910118-32910324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
70, 96
               

               
Conread position:
               
199-409
               

               
Cow position:
               
chrX:24170715-24170496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 85
               

               
Conread position:
               
199-430
               

               
Cow position:
               
chrX:4559753-4559983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
199-469
               

               
Cow position:
               
chrX:42450000-42449727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 220
               

               
Conread position:
               
200-399
               

               
Cow position:
               
chrX:11653779-11653986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
201-400
               

               
Cow position:
               
chrX:47079643-47079847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 195
               

               
Conread position:
               
201-409
               

               
Cow position:
               
chrX:20583682-20583889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
68, 126
               

               
Conread position:
               
201-411
               

               
Cow position:
               
chrX:31479987-31480197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
68, 57
               

               
Conread position:
               
201-411
               

               
Cow position:
               
chrX:48558762-48558977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
201-418
               

               
Cow position:
               
chrX:19356485-19356702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
202-399
               

               
Cow position:
               
chrX:19761771-19761968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 142
               

               
Conread position:
               
202-407
               

               
Cow position:
               
chrX:47854998-47855204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
102, 124
               

               
Conread position:
               
202-438
               

               
Cow position:
               
chrX:20345470-20345707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
204-396
               

               
Cow position:
               
chrX:41810149-41809959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 137
               

               
Conread position:
               
204-411
               

               
Cow position:
               
chrX:5026275-5026482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 121
               

               
Conread position:
               
205-409
               

               
Cow position:
               
chrX:28067870-28068080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
205-415
               

               
Cow position:
               
chrX:35285193-35285410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
206-400
               

               
Cow position:
               
chrX:44991392-44991197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 120
               

               
Conread position:
               
209-418
               

               
Cow position:
               
chrX:11454208-11454413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
210-430
               

               
Cow position:
               
chrX:32866900-32867120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
211-407
               

               
Cow position:
               
chrX:7911046-7910846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
211-408
               

               
Cow position:
               
chrX:23359085-23358889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
212-408
               

               
Cow position:
               
chrX:46079112-46079316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
57, 172
               

               
Conread position:
               
214-409
               

               
Cow position:
               
chrX:40648925-40649131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
215-339
               

               
Cow position:
               
chrX:41939853-41939980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
215-403
               

               
Cow position:
               
chrX:8326934-8327128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
215-408
               

               
Cow position:
               
chrX:41453332-41453527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 112
               

               
Conread position:
               
215-411
               

               
Cow position:
               
chrX:40046545-40046333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
216-373
               

               
Cow position:
               
chrX:29688144-29687982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
216-406
               

               
Cow position:
               
chrX:41858850-41858658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
217-409
               

               
Cow position:
               
chrX:18439028-18439226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
217-411
               

               
Cow position:
               
chrX:37749951-37749763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
217-418
               

               
Cow position:
               
chrX:2314587-2314380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chrX:34398752-34398537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
220-407
               

               
Cow position:
               
chrX:5487897-5487721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
220-409
               

               
Cow position:
               
chrX:27270410-27270598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 156
               

               
Conread position:
               
220-411
               

               
Cow position:
               
chrX:34991399-34991593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
220-438
               

               
Cow position:
               
chrX:32191138-32190916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 197
               

               
Conread position:
               
220-440
               

               
Cow position:
               
chrX:21817773-21817550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 198
               

               
Conread position:
               
222-409
               

               
Cow position:
               
chrX:6480559-6480366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
223-398
               

               
Cow position:
               
chrX:13321972-13322152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
223-408
               

               
Cow position:
               
chrX:16556179-16555995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
223-409
               

               
Cow position:
               
chrX:37752068-37751882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
223-428
               

               
Cow position:
               
chrX:33020475-33020684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 200
               

               
Conread position:
               
225-403
               

               
Cow position:
               
chrX:45759711-45759892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
44, 86
               

               
Conread position:
               
225-428
               

               
Cow position:
               
chrX:35409792-35410000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
226-408
               

               
Cow position:
               
chrX:31983544-31983350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
227-409
               

               
Cow position:
               
chrX:23471824-23471639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
228-404
               

               
Cow position:
               
chrX:35681610-35681791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
228-408
               

               
Cow position:
               
chrX:1960382-1960197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
228-409
               

               
Cow position:
               
chrX:3605923-3606110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
228-409
               

               
Cow position:
               
chrX:16763882-16763701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
231-408
               

               
Cow position:
               
chrX:20666855-20666674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
231-430
               

               
Cow position:
               
chrX:11529392-11529588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
234-400
               

               
Cow position:
               
chrX:41166776-41166609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
238-408
               

               
Cow position:
               
chrX:51848-51674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
238-437
               

               
Cow position:
               
chrX:4169978-4169773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
238-438
               

               
Cow position:
               
chrX:1121314-1121107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
241-407
               

               
Cow position:
               
chrX:39642566-39642401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
241-408
               

               
Cow position:
               
chrX:17525811-17525649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 86
               

               
Conread position:
               
241-411
               

               
Cow position:
               
chrX:11674166-11674343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
241-428
               

               
Cow position:
               
chrX:37867488-37867682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
242-399
               

               
Cow position:
               
chrX:15100040-15100197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
242-408
               

               
Cow position:
               
chrX:42875269-42875437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
242-408
               

               
Cow position:
               
chrX:46068702-46068536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
242-410
               

               
Cow position:
               
chrX:27170796-27170968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
242-429
               

               
Cow position:
               
chrX:41199281-41199471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
243-409
               

               
Cow position:
               
chrX:42760310-42760482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
244-396
               

               
Cow position:
               
chrX:10237854-10237697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
244-399
               

               
Cow position:
               
chrX:26882021-26881860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
244-407
               

               
Cow position:
               
chrX:11602424-11602260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
247-408
               

               
Cow position:
               
chrX:4750270-4750110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
247-408
               

               
Cow position:
               
chrX:29682049-29681890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
247-411
               

               
Cow position:
               
chrX:11589305-11589136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
247-437
               

               
Cow position:
               
chrX:44995560-44995758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
248-399
               

               
Cow position:
               
chrX:6640490-6640643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
248-403
               

               
Cow position:
               
chrX:40556396-40556240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
248-403
               

               
Cow position:
               
chrX:44798986-44798828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
248-411
               

               
Cow position:
               
chrX:16801200-16801036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
248-432
               

               
Cow position:
               
chrX:41010961-41011141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
249-403
               

               
Cow position:
               
chrX:3494981-3494827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
250-436
               

               
Cow position:
               
chrX:14135743-14135929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
252-415
               

               
Cow position:
               
chrX:41215389-41215558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
255-403
               

               
Cow position:
               
chrX:4486954-4486801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
257-408
               

               
Cow position:
               
chrX:24425930-24425773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
258-413
               

               
Cow position:
               
chrX:25827062-25826906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
259-415
               

               
Cow position:
               
chrX:231944-231786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 61
               

               
Conread position:
               
260-408
               

               
Cow position:
               
chrX:35029851-35029708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 67
               

               
Conread position:
               
263-408
               

               
Cow position:
               
chrX:37176953-37177095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
268-399
               

               
Cow position:
               
chrX:43028316-43028448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
268-408
               

               
Cow position:
               
chrX:31279840-31279699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
271-409
               

               
Cow position:
               
chrX:1996365-1996222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
271-411
               

               
Cow position:
               
chrX:38726031-38726167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
278-405
               

               
Cow position:
               
chrX:42216537-42216408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
286-408
               

               
Cow position:
               
chrX:38727036-38726916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
305-434
               

               
Cow position:
               
chrX:1938137-1938267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
307-411
               

               
Cow position:
               
chrX:3130770-3130875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
313-411
               

               
Cow position:
               
chrX:26850292-26850194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.