Cow genome map
| Conread name: | Ova1-OVRM10138H04 | 
| Conread position: | 12-205 | 
| Cow position: | chr3:74088803-74088611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 157, 0 | 
| Conread position: | 13-214 | 
| Cow position: | chr3:11640627-11640833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 48, 16 | 
| Conread position: | 14-218 | 
| Cow position: | chr3:46006116-46005919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 169, 47 | 
| Conread position: | 16-223 | 
| Cow position: | chr3:12978715-12978507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 199, 50 | 
| Conread position: | 18-204 | 
| Cow position: | chr3:58767161-58767352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 19-173 | 
| Cow position: | chr3:74878685-74878531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 19-218 | 
| Cow position: | chr3:43726980-43727175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 48, 143 | 
| Conread position: | 19-229 | 
| Cow position: | chr3:37041318-37041531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 5e-40 | 
| Alignm gaps (pig, cow): | 44, 193 | 
| Conread position: | 19-280 | 
| Cow position: | chr3:12712014-12711749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 47, 238 | 
| Conread position: | 21-217 | 
| Cow position: | chr3:76268073-76267872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 21-217 | 
| Cow position: | chr3:83215165-83215365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 22-195 | 
| Cow position: | chr3:5097113-5097287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 22-204 | 
| Cow position: | chr3:17058634-17058457 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 22-209 | 
| Cow position: | chr3:73395028-73395211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 184, 37 | 
| Conread position: | 22-217 | 
| Cow position: | chr3:67704449-67704651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 22-218 | 
| Cow position: | chr3:46901104-46901300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 75, 38 | 
| Conread position: | 24-174 | 
| Cow position: | chr3:81359196-81359048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 24-182 | 
| Cow position: | chr3:80468767-80468611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 125, 0 | 
| Conread position: | 24-186 | 
| Cow position: | chr3:20437743-20437585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 24-192 | 
| Cow position: | chr3:61840185-61840353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 37, 100 | 
| Conread position: | 24-194 | 
| Cow position: | chr3:56468-56298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 86, 103 | 
| Conread position: | 24-195 | 
| Cow position: | chr3:5374241-5374408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 24-195 | 
| Cow position: | chr3:53739277-53739105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 24-199 | 
| Cow position: | chr3:39661547-39661373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 100, 0 | 
| Conread position: | 24-199 | 
| Cow position: | chr3:46541919-46541745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 160, 16 | 
| Conread position: | 24-203 | 
| Cow position: | chr3:28908295-28908115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 24-203 | 
| Cow position: | chr3:66292268-66292088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 35, 15 | 
| Conread position: | 24-203 | 
| Cow position: | chr3:79292738-79292916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 107, 0 | 
| Conread position: | 24-204 | 
| Cow position: | chr3:4050103-4050282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 40, 72 | 
| Conread position: | 24-204 | 
| Cow position: | chr3:17235301-17235128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 68, 32 | 
| Conread position: | 24-204 | 
| Cow position: | chr3:53046754-53046574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 38, 101 | 
| Conread position: | 24-204 | 
| Cow position: | chr3:81087724-81087550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 144, 37 | 
| Conread position: | 24-204 | 
| Cow position: | chr3:83474648-83474834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 5, 73 | 
| Conread position: | 24-205 | 
| Cow position: | chr3:8061036-8061216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 37, 15 | 
| Conread position: | 24-205 | 
| Cow position: | chr3:54100812-54100636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 24-205 | 
| Cow position: | chr3:75778153-75777971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 24-206 | 
| Cow position: | chr3:8733440-8733268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 160, 20 | 
| Conread position: | 24-206 | 
| Cow position: | chr3:58765170-58764984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 24-210 | 
| Cow position: | chr3:26904019-26904205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 128, 106 | 
| Conread position: | 24-210 | 
| Cow position: | chr3:51234187-51234001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 27, 79 | 
| Conread position: | 24-213 | 
| Cow position: | chr3:17935030-17934840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 42, 8 | 
| Conread position: | 24-214 | 
| Cow position: | chr3:3889662-3889470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 47, 66 | 
| Conread position: | 24-214 | 
| Cow position: | chr3:30222096-30222290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 24-214 | 
| Cow position: | chr3:55984003-55984198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 42, 126 | 
| Conread position: | 24-217 | 
| Cow position: | chr3:77582018-77582210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 174, 72 | 
| Conread position: | 24-218 | 
| Cow position: | chr3:35852566-35852368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 24-218 | 
| Cow position: | chr3:55177842-55177642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 38, 77 | 
| Conread position: | 24-218 | 
| Cow position: | chr3:59597092-59597282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 182, 38 | 
| Conread position: | 24-218 | 
| Cow position: | chr3:65058610-65058801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 160, 39 | 
| Conread position: | 24-219 | 
| Cow position: | chr3:67930274-67930080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 35, 40 | 
| Conread position: | 24-221 | 
| Cow position: | chr3:5365586-5365784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 181, 0 | 
| Conread position: | 24-222 | 
| Cow position: | chr3:38691498-38691298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 73, 39 | 
| Conread position: | 24-222 | 
| Cow position: | chr3:63269131-63269329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 39, 167 | 
| Conread position: | 24-223 | 
| Cow position: | chr3:2506567-2506368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 68, 37 | 
| Conread position: | 24-223 | 
| Cow position: | chr3:55124375-55124177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 36, 165 | 
| Conread position: | 24-226 | 
| Cow position: | chr3:10103955-10104152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 8e-34 | 
| Alignm gaps (pig, cow): | 181, 32 | 
| Conread position: | 24-226 | 
| Cow position: | chr3:58540618-58540410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 41, 124 | 
| Conread position: | 24-226 | 
| Cow position: | chr3:70401810-70402010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 182, 38 | 
| Conread position: | 24-226 | 
| Cow position: | chr3:80581573-80581767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 184, 35 | 
| Conread position: | 24-226 | 
| Cow position: | chr3:84175917-84175712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 29, 170 | 
| Conread position: | 24-229 | 
| Cow position: | chr3:71231307-71231508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 24-229 | 
| Cow position: | chr3:77365389-77365177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 36, 80 | 
| Conread position: | 24-231 | 
| Cow position: | chr3:75045968-75045758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 43, 69 | 
| Conread position: | 24-239 | 
| Cow position: | chr3:14552785-14552997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 58, 39 | 
| Conread position: | 24-274 | 
| Cow position: | chr3:7566516-7566260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 9e-35 | 
| Alignm gaps (pig, cow): | 36, 142 | 
| Conread position: | 24-274 | 
| Cow position: | chr3:59474028-59474281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 25, 225 | 
| Conread position: | 25-204 | 
| Cow position: | chr3:29360236-29360062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 99, 0 | 
| Conread position: | 25-229 | 
| Cow position: | chr3:21015049-21014843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 27, 9 | 
| Conread position: | 27-182 | 
| Cow position: | chr3:78896559-78896714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 27-188 | 
| Cow position: | chr3:27697065-27696906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 27-201 | 
| Cow position: | chr3:53113085-53113261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 27-202 | 
| Cow position: | chr3:210228-210406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 27-202 | 
| Cow position: | chr3:79884570-79884399 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 27-203 | 
| Cow position: | chr3:3985239-3985410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 27-203 | 
| Cow position: | chr3:33693729-33693907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 17, 54 | 
| Conread position: | 27-203 | 
| Cow position: | chr3:49650298-49650476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 27-204 | 
| Cow position: | chr3:15228909-15228734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 27-204 | 
| Cow position: | chr3:26960678-26960499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 27-204 | 
| Cow position: | chr3:61323243-61323420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 117, 59 | 
| Conread position: | 27-204 | 
| Cow position: | chr3:65969073-65969256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 34, 167 | 
| Conread position: | 27-204 | 
| Cow position: | chr3:73708959-73709135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 156, 0 | 
| Conread position: | 27-205 | 
| Cow position: | chr3:55970418-55970596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 39, 161 | 
| Conread position: | 27-205 | 
| Cow position: | chr3:59588431-59588600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 27-205 | 
| Cow position: | chr3:74846800-74846619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 35, 59 | 
| Conread position: | 27-205 | 
| Cow position: | chr3:84250633-84250454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 33, 105 | 
| Conread position: | 27-208 | 
| Cow position: | chr3:48241528-48241707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 9e-35 | 
| Alignm gaps (pig, cow): | 34, 61 | 
| Conread position: | 27-208 | 
| Cow position: | chr3:49382859-49383042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 27-212 | 
| Cow position: | chr3:83928160-83928343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 5, 0 | 
| Conread position: | 27-214 | 
| Cow position: | chr3:31309442-31309254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 179, 0 | 
| Conread position: | 27-214 | 
| Cow position: | chr3:34669815-34669634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 32, 37 | 
| Conread position: | 27-214 | 
| Cow position: | chr3:70334052-70333872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 179, 45 | 
| Conread position: | 27-217 | 
| Cow position: | chr3:37599515-37599326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 27-217 | 
| Cow position: | chr3:44101883-44102071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 100, 34 | 
| Conread position: | 27-217 | 
| Cow position: | chr3:83490998-83491190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 175, 124 | 
| Conread position: | 27-218 | 
| Cow position: | chr3:3316901-3316712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 82, 36 | 
| Conread position: | 27-218 | 
| Cow position: | chr3:23408440-23408254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 79, 25 | 
| Conread position: | 27-218 | 
| Cow position: | chr3:23804428-23804608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 39, 32 | 
| Conread position: | 27-218 | 
| Cow position: | chr3:23920517-23920325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 177, 0 | 
| Conread position: | 27-218 | 
| Cow position: | chr3:31225350-31225534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 27-218 | 
| Cow position: | chr3:35621214-35621404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 33, 76 | 
| Conread position: | 27-220 | 
| Cow position: | chr3:5100855-5100668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 27-220 | 
| Cow position: | chr3:72390997-72391185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 27-221 | 
| Cow position: | chr3:72342156-72342352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 27-222 | 
| Cow position: | chr3:53704055-53703858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 52, 160 | 
| Conread position: | 27-222 | 
| Cow position: | chr3:57624376-57624570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 173, 0 | 
| Conread position: | 27-223 | 
| Cow position: | chr3:4319623-4319819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 27-223 | 
| Cow position: | chr3:48810727-48810535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 125, 12 | 
| Conread position: | 27-223 | 
| Cow position: | chr3:52652170-52651972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 27-223 | 
| Cow position: | chr3:65413368-65413168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 10, 5 | 
| Conread position: | 27-226 | 
| Cow position: | chr3:48900429-48900221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 40, 104 | 
| Conread position: | 27-226 | 
| Cow position: | chr3:58318042-58317838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 41, 180 | 
| Conread position: | 27-229 | 
| Cow position: | chr3:1830663-1830463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 34, 54 | 
| Conread position: | 27-229 | 
| Cow position: | chr3:5366682-5366881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 27-229 | 
| Cow position: | chr3:17456356-17456157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 171, 0 | 
| Conread position: | 27-229 | 
| Cow position: | chr3:24468467-24468272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 27-229 | 
| Cow position: | chr3:28898310-28898109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 27-229 | 
| Cow position: | chr3:49482795-49482602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 27-230 | 
| Cow position: | chr3:70334783-70334581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 172, 0 | 
| Conread position: | 27-231 | 
| Cow position: | chr3:21867125-21866923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 26, 14 | 
| Conread position: | 27-236 | 
| Cow position: | chr3:71238068-71238275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 179, 34 | 
| Conread position: | 27-239 | 
| Cow position: | chr3:19711423-19711214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 206, 50 | 
| Conread position: | 27-249 | 
| Cow position: | chr3:59621735-59621511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 179, 36 | 
| Conread position: | 27-274 | 
| Cow position: | chr3:23471555-23471302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 32, 221 | 
| Conread position: | 28-203 | 
| Cow position: | chr3:53904377-53904541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 28-204 | 
| Cow position: | chr3:17134251-17134423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 28-204 | 
| Cow position: | chr3:74900726-74900554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 28-210 | 
| Cow position: | chr3:57760412-57760594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 178, 33 | 
| Conread position: | 28-214 | 
| Cow position: | chr3:55712344-55712540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 28-214 | 
| Cow position: | chr3:72503986-72503796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 28-218 | 
| Cow position: | chr3:61144013-61144198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 169, 12 | 
| Conread position: | 28-225 | 
| Cow position: | chr3:2680430-2680624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 178, 34 | 
| Conread position: | 28-229 | 
| Cow position: | chr3:3656426-3656628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 28-229 | 
| Cow position: | chr3:75238370-75238570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 173, 0 | 
| Conread position: | 28-230 | 
| Cow position: | chr3:15052039-15051836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 34, 108 | 
| Conread position: | 28-236 | 
| Cow position: | chr3:65019953-65019732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 29-204 | 
| Cow position: | chr3:31850459-31850288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 30, 38 | 
| Conread position: | 29-218 | 
| Cow position: | chr3:71423639-71423451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 10, 94 | 
| Conread position: | 29-230 | 
| Cow position: | chr3:59604757-59604958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 8, 100 | 
| Conread position: | 30-213 | 
| Cow position: | chr3:71474495-71474306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 7, 56 | 
| Conread position: | 31-223 | 
| Cow position: | chr3:59630586-59630404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 177, 45 | 
| Conread position: | 32-204 | 
| Cow position: | chr3:74134616-74134793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 32-229 | 
| Cow position: | chr3:14801658-14801857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 27, 46 | 
| Conread position: | 32-231 | 
| Cow position: | chr3:34871481-34871680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 35, 129 | 
| Conread position: | 32-278 | 
| Cow position: | chr3:18686824-18687067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 176, 35 | 
| Conread position: | 35-204 | 
| Cow position: | chr3:27940218-27940054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 35-204 | 
| Cow position: | chr3:36160276-36160104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 35-204 | 
| Cow position: | chr3:48478113-48477947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 26, 65 | 
| Conread position: | 35-204 | 
| Cow position: | chr3:52017688-52017860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 35-214 | 
| Cow position: | chr3:40145386-40145564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 26, 45 | 
| Conread position: | 35-217 | 
| Cow position: | chr3:23203316-23203129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 20, 133 | 
| Conread position: | 35-218 | 
| Cow position: | chr3:18059620-18059807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 35-226 | 
| Cow position: | chr3:29596307-29596500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 27, 136 | 
| Conread position: | 35-226 | 
| Cow position: | chr3:49790890-49790700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 175, 26 | 
| Conread position: | 35-229 | 
| Cow position: | chr3:53875842-53875652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 36-201 | 
| Cow position: | chr3:38347114-38347276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 36-204 | 
| Cow position: | chr3:66884019-66883855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 36-282 | 
| Cow position: | chr3:8393270-8393514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 18, 92 | 
| Conread position: | 37-213 | 
| Cow position: | chr3:45222234-45222045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 38-182 | 
| Cow position: | chr3:52147728-52147584 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 38-205 | 
| Cow position: | chr3:51033290-51033456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 39-220 | 
| Cow position: | chr3:14546924-14547106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 23, 125 | 
| Conread position: | 40-204 | 
| Cow position: | chr3:81471172-81471007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 40-208 | 
| Cow position: | chr3:55085249-55085077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 20, 160 | 
| Conread position: | 43-205 | 
| Cow position: | chr3:24352786-24352950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 15, 62 | 
| Conread position: | 44-204 | 
| Cow position: | chr3:35074811-35074967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 19, 0 | 
| Conread position: | 44-223 | 
| Cow position: | chr3:61467264-61467080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 44-229 | 
| Cow position: | chr3:19793664-19793480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 17, 115 | 
| Conread position: | 45-219 | 
| Cow position: | chr3:39248093-39247917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 9e-35 | 
| Alignm gaps (pig, cow): | 106, 16 | 
| Conread position: | 46-229 | 
| Cow position: | chr3:68303250-68303428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 48-198 | 
| Cow position: | chr3:74502392-74502242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 48-213 | 
| Cow position: | chr3:20841939-20841775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 49-204 | 
| Cow position: | chr3:56704387-56704232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 52-231 | 
| Cow position: | chr3:49996784-49996605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 64, 11 | 
| Conread position: | 53-214 | 
| Cow position: | chr3:11281704-11281866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 149, 0 | 
| Conread position: | 63-202 | 
| Cow position: | chr3:40213085-40212947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 63-204 | 
| Cow position: | chr3:7427950-7428087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 115, 61 | 
| Conread position: | 63-204 | 
| Cow position: | chr3:38783554-38783695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 63-204 | 
| Cow position: | chr3:64373209-64373067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 63-204 | 
| Cow position: | chr3:69650941-69650800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 63-217 | 
| Cow position: | chr3:84174249-84174402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 138, 0 | 
| Conread position: | 63-218 | 
| Cow position: | chr3:39996943-39996786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 59, 140 | 
| Conread position: | 63-218 | 
| Cow position: | chr3:56949140-56948984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 143, 0 | 
| Conread position: | 63-222 | 
| Cow position: | chr3:21997840-21997680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 143, 0 | 
| Conread position: | 63-225 | 
| Cow position: | chr3:2637874-2638033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 144, 0 | 
| Conread position: | 63-226 | 
| Cow position: | chr3:33329765-33329929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 127, 0 | 
| Conread position: | 63-226 | 
| Cow position: | chr3:48468121-48468283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 138, 0 | 
| Conread position: | 63-229 | 
| Cow position: | chr3:2025144-2025313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 63-229 | 
| Cow position: | chr3:84157496-84157332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 137, 0 | 
| Conread position: | 63-239 | 
| Cow position: | chr3:11606262-11606443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 61, 144 | 
| Conread position: | 63-239 | 
| Cow position: | chr3:51609236-51609063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 168, 37 | 
| Conread position: | 64-217 | 
| Cow position: | chr3:33252940-33252788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 136, 0 | 
| Conread position: | 64-226 | 
| Cow position: | chr3:45211250-45211407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 64-238 | 
| Cow position: | chr3:20515869-20515696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 141, 152 | 
| Conread position: | 65-202 | 
| Cow position: | chr3:81923849-81923713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 65-204 | 
| Cow position: | chr3:42423376-42423239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 65-204 | 
| Cow position: | chr3:51349773-51349912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 65-225 | 
| Cow position: | chr3:21641938-21642094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 66-204 | 
| Cow position: | chr3:11254217-11254079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 66-214 | 
| Cow position: | chr3:2648559-2648411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 86, 92 | 
| Conread position: | 67-202 | 
| Cow position: | chr3:58940078-58940212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 67-204 | 
| Cow position: | chr3:83889199-83889335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 69-206 | 
| Cow position: | chr3:11229411-11229274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 69-225 | 
| Cow position: | chr3:67959962-67959811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 137, 53 | 
| Conread position: | 72-205 | 
| Cow position: | chr3:22889060-22888927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 77-202 | 
| Cow position: | chr3:41863586-41863712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 77-204 | 
| Cow position: | chr3:84137853-84137726 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 79-203 | 
| Cow position: | chr3:70756677-70756554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 81-204 | 
| Cow position: | chr3:44959908-44960031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 81-210 | 
| Cow position: | chr3:42967412-42967285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 81-236 | 
| Cow position: | chr3:46559749-46559591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 81-268 | 
| Cow position: | chr3:11705217-11705408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 83-204 | 
| Cow position: | chr3:8814145-8814024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 83-224 | 
| Cow position: | chr3:38828727-38828866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 91-218 | 
| Cow position: | chr3:47199151-47199023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 115, 0 | 
| Conread position: | 97-224 | 
| Cow position: | chr3:83199492-83199622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 100-204 | 
| Cow position: | chr3:15859394-15859290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 105 | 
| Alignm identity: | 86 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 100-210 | 
| Cow position: | chr3:62186135-62186247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 104-268 | 
| Cow position: | chr3:15683162-15683004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 5, 0 | 
| Conread position: | 107-204 | 
| Cow position: | chr3:59681912-59681815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 98 | 
| Alignm identity: | 81 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 107-218 | 
| Cow position: | chr3:70402636-70402747 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 99, 42 | 
| Conread position: | 107-223 | 
| Cow position: | chr3:61133630-61133747 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 99, 0 | 
| Conread position: | 107-226 | 
| Cow position: | chr3:36189882-36190002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 30, 96 | 
| Conread position: | 107-229 | 
| Cow position: | chr3:61024031-61023910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 94, 0 | 
| Conread position: | 108-202 | 
| Cow position: | chr3:39157655-39157561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 95 | 
| Alignm identity: | 79 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 108-205 | 
| Cow position: | chr3:4167282-4167185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 98 | 
| Alignm identity: | 84 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 108-226 | 
| Cow position: | chr3:58614449-58614569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 108-282 | 
| Cow position: | chr3:2016428-2016602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 98, 124 | 
| Conread position: | 110-218 | 
| Cow position: | chr3:4086869-4086760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 110 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 118-226 | 
| Cow position: | chr3:63069363-63069256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 109 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 120-220 | 
| Cow position: | chr3:85044407-85044308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 101 | 
| Alignm identity: | 83 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 75, 0 | 
Show alignments to all cow chromosomes.
