Cow genome map

Conread name: Ova1-OVRM10152G02

Conread position: 5-417
Cow position: chr1:94253146-94253549 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 146

Conread position: 6-305
Cow position: chr1:55322828-55322540 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 101, 145

Conread position: 6-711
Cow position: chr1:67286715-67287427 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 226

Conread position: 7-147
Cow position: chr1:30027321-30027178 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 102, 90

Conread position: 7-162
Cow position: chr1:72136870-72137027 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 100, 69

Conread position: 7-469
Cow position: chr1:24650986-24651425 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 314
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 95, 142

Conread position: 9-138
Cow position: chr1:89479538-89479669 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 95, 15

Conread position: 9-153
Cow position: chr1:34689572-34689720 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 9-615
Cow position: chr1:21720121-21720713 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 116

Conread position: 9-704
Cow position: chr1:40513146-40512447 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 14

Conread position: 158-696
Cow position: chr1:88270169-88269626 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 359
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 58, 19

Conread position: 185-439
Cow position: chr1:34690086-34690339 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 202

Conread position: 187-432
Cow position: chr1:84150075-84150318 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 149, 29

Conread position: 187-437
Cow position: chr1:31418469-31418215 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 113

Conread position: 187-562
Cow position: chr1:77656169-77656537 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 244
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 16

Conread position: 187-605
Cow position: chr1:44101297-44100870 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 275
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 47

Conread position: 187-657
Cow position: chr1:63501922-63502404 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 63

Conread position: 187-703
Cow position: chr1:31330309-31329796 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 350
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 94, 26

Conread position: 187-715
Cow position: chr1:29033186-29033724 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 84

Conread position: 187-715
Cow position: chr1:33389190-33389738 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 83

Conread position: 230-715
Cow position: chr1:15026467-15026963 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 35

Conread position: 242-606
Cow position: chr1:5319279-5319636 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 246
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 49, 45

Conread position: 252-710
Cow position: chr1:79456814-79456369 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 45

Conread position: 287-715
Cow position: chr1:67328095-67327663 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 287
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 56, 5

Conread position: 290-509
Cow position: chr1:29413971-29413747 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 307-649
Cow position: chr1:78361338-78361681 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 225
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 125

Conread position: 312-715
Cow position: chr1:98659687-98659278 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 97

Conread position: 313-512
Cow position: chr1:58179502-58179300 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 120, 59

Conread position: 313-563
Cow position: chr1:38387150-38386900 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 42

Conread position: 313-676
Cow position: chr1:22344128-22344479 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 72

Conread position: 319-639
Cow position: chr1:57662197-57662516 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 223
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 25, 122

Conread position: 320-567
Cow position: chr1:86610042-86610289 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 32

Conread position: 325-715
Cow position: chr1:22842849-22843247 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 264
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 24, 198

Conread position: 326-629
Cow position: chr1:98864524-98864214 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 209
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 49

Conread position: 330-715
Cow position: chr1:55321934-55321538 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 45

Conread position: 361-705
Cow position: chr1:30518935-30519284 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 161

Conread position: 373-575
Cow position: chr1:56193670-56193467 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 27

Conread position: 373-715
Cow position: chr1:49973929-49973582 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 9

Conread position: 386-676
Cow position: chr1:23052056-23052357 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 34, 116

Conread position: 390-715
Cow position: chr1:3385736-3385413 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 21

Conread position: 403-584
Cow position: chr1:45019586-45019406 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 60, 72

Conread position: 411-715
Cow position: chr1:33551227-33551532 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 5

Conread position: 411-715
Cow position: chr1:56144035-56143729 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 5

Conread position: 411-715
Cow position: chr1:58336138-58336444 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 5

Conread position: 411-715
Cow position: chr1:88131074-88131379 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 5

Conread position: 411-715
Cow position: chr1:91892820-91892513 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 5

Conread position: 411-715
Cow position: chr1:99913720-99914026 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 5

Conread position: 416-715
Cow position: chr1:21999650-21999348 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 99

Conread position: 416-715
Cow position: chr1:42736755-42737061 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 102

Conread position: 416-715
Cow position: chr1:48246152-48246440 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 98

Conread position: 416-715
Cow position: chr1:72081086-72081386 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 91

Conread position: 417-711
Cow position: chr1:17036257-17035960 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 100

Conread position: 424-715
Cow position: chr1:76545226-76544933 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 91

Conread position: 437-629
Cow position: chr1:61309334-61309524 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 77, 0

Conread position: 442-713
Cow position: chr1:66999352-66999616 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 159

Conread position: 442-715
Cow position: chr1:20829215-20829492 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 8

Conread position: 450-715
Cow position: chr1:82564836-82565106 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 67

Conread position: 457-713
Cow position: chr1:11291763-11291507 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 57

Conread position: 457-713
Cow position: chr1:13450549-13450805 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 57

Conread position: 457-713
Cow position: chr1:21087756-21088014 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 54

Conread position: 457-713
Cow position: chr1:39544112-39544370 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 55

Conread position: 457-713
Cow position: chr1:53198892-53199151 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 24

Conread position: 457-713
Cow position: chr1:71562230-71561972 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 57

Conread position: 457-713
Cow position: chr1:82652996-82653266 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 57

Conread position: 457-715
Cow position: chr1:31397033-31397295 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 57

Conread position: 457-715
Cow position: chr1:40053698-40053957 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 57

Conread position: 457-715
Cow position: chr1:43571059-43570802 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 176, 55

Conread position: 458-713
Cow position: chr1:40574557-40574814 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 56

Conread position: 458-713
Cow position: chr1:82912800-82912543 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 56

Conread position: 465-656
Cow position: chr1:30283192-30283003 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 185, 49

Conread position: 465-711
Cow position: chr1:85792037-85792280 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 49

Conread position: 465-713
Cow position: chr1:17012388-17012138 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 47

Conread position: 465-713
Cow position: chr1:86547784-86547538 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 49

Conread position: 465-715
Cow position: chr1:5355477-5355729 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 49

Conread position: 465-715
Cow position: chr1:56490201-56490454 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 49

Conread position: 465-715
Cow position: chr1:60339656-60339905 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 49

Conread position: 465-715
Cow position: chr1:89425924-89426176 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 49

Show alignments to all cow chromosomes.