Cow genome map
| Conread name: | Ova1-OVRM10152G02 |
| Conread position: | 6-334 |
| Cow position: | chr3:63004624-63004317 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 7-274 |
| Cow position: | chr3:14632589-14632334 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 7-325 |
| Cow position: | chr3:29595303-29595611 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 99, 131 |
| Conread position: | 9-142 |
| Cow position: | chr3:24591516-24591387 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 9-144 |
| Cow position: | chr3:4027383-4027522 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 9-154 |
| Cow position: | chr3:63241666-63241518 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 9-290 |
| Cow position: | chr3:19802762-19803033 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 9-327 |
| Cow position: | chr3:48230894-48230591 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 98, 141 |
| Conread position: | 9-667 |
| Cow position: | chr3:64358059-64357411 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 9-715 |
| Cow position: | chr3:52864355-52863648 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 34 |
| Conread position: | 24-715 |
| Cow position: | chr3:6685576-6686293 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 37 |
| Conread position: | 59-715 |
| Cow position: | chr3:66990924-66991569 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 162-659 |
| Cow position: | chr3:24591394-24590896 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 345 |
| Conread position: | 187-713 |
| Cow position: | chr3:49333741-49334267 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 358 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 187-715 |
| Cow position: | chr3:15178671-15179183 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 29 |
| Conread position: | 187-715 |
| Cow position: | chr3:49272549-49272005 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 349 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 234-715 |
| Cow position: | chr3:2907763-2907288 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 262-563 |
| Cow position: | chr3:50127693-50127375 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 164, 67 |
| Conread position: | 304-715 |
| Cow position: | chr3:42631486-42631905 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 300 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 307-715 |
| Cow position: | chr3:46015719-46016121 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 313-432 |
| Cow position: | chr3:29597139-29597260 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 313-715 |
| Cow position: | chr3:16073825-16074208 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 5 |
| Conread position: | 325-715 |
| Cow position: | chr3:18356401-18356015 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 351-708 |
| Cow position: | chr3:32841905-32841549 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 88, 63 |
| Conread position: | 360-707 |
| Cow position: | chr3:26836636-26836317 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 82, 127 |
| Conread position: | 361-535 |
| Cow position: | chr3:38492781-38492944 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 373-715 |
| Cow position: | chr3:49545067-49544724 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 373-715 |
| Cow position: | chr3:57484590-57484244 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 379-715 |
| Cow position: | chr3:594729-595064 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 6 |
| Conread position: | 385-714 |
| Cow position: | chr3:3981894-3982228 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 138 |
| Conread position: | 411-715 |
| Cow position: | chr3:18542226-18541921 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 411-715 |
| Cow position: | chr3:36881740-36881431 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 411-715 |
| Cow position: | chr3:78027228-78026939 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 412-715 |
| Cow position: | chr3:50011852-50012154 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 416-715 |
| Cow position: | chr3:10239835-10240142 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 416-715 |
| Cow position: | chr3:40823569-40823874 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 102 |
| Conread position: | 417-668 |
| Cow position: | chr3:45774220-45773968 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 417-715 |
| Cow position: | chr3:5995519-5995215 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 424-715 |
| Cow position: | chr3:72630261-72630555 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 442-689 |
| Cow position: | chr3:77548930-77549174 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 191, 75 |
| Conread position: | 457-713 |
| Cow position: | chr3:18859635-18859893 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 57 |
| Conread position: | 457-713 |
| Cow position: | chr3:19878878-19879136 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chr3:20380764-20381022 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chr3:29331050-29330792 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chr3:32622816-32622558 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chr3:36117883-36118140 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 57 |
| Conread position: | 457-713 |
| Cow position: | chr3:37969269-37969524 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chr3:64027865-64027607 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 55 |
| Conread position: | 457-713 |
| Cow position: | chr3:64650847-64651105 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-715 |
| Cow position: | chr3:3523242-3523500 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-715 |
| Cow position: | chr3:22336109-22336369 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 460-579 |
| Cow position: | chr3:2710714-2710597 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 461-681 |
| Cow position: | chr3:74439528-74439750 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 53 |
| Conread position: | 465-713 |
| Cow position: | chr3:40339883-40339633 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 49 |
| Conread position: | 465-713 |
| Cow position: | chr3:41211508-41211256 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 465-715 |
| Cow position: | chr3:24314696-24314947 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 49 |
| Conread position: | 465-715 |
| Cow position: | chr3:49613748-49613495 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 49 |
Show alignments to all cow chromosomes.