Cow genome map
| Conread name: | Ova1-OVRM10152G02 |
| Conread position: | 9-156 |
| Cow position: | chrX:28549852-28550003 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 98, 66 |
| Conread position: | 9-159 |
| Cow position: | chrX:17668315-17668162 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 9-288 |
| Cow position: | chrX:31725013-31725284 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 98, 142 |
| Conread position: | 9-466 |
| Cow position: | chrX:21587178-21587634 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 137 |
| Conread position: | 9-715 |
| Cow position: | chrX:2536793-2536089 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 10 |
| Conread position: | 30-709 |
| Cow position: | chrX:6283072-6282398 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 62-715 |
| Cow position: | chrX:26427945-26427288 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 121-715 |
| Cow position: | chrX:17668127-17667537 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 187-714 |
| Cow position: | chrX:22130441-22129882 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 187-715 |
| Cow position: | chrX:10417485-10416935 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 366 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 230-715 |
| Cow position: | chrX:13052898-13053380 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 134 |
| Conread position: | 247-483 |
| Cow position: | chrX:34991798-34992033 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 180, 14 |
| Conread position: | 256-523 |
| Cow position: | chrX:2143633-2143899 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 158, 39 |
| Conread position: | 280-715 |
| Cow position: | chrX:18534407-18534828 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 139 |
| Conread position: | 288-523 |
| Cow position: | chrX:30004089-30004335 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 288-715 |
| Cow position: | chrX:40246955-40246517 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 304-567 |
| Cow position: | chrX:29928390-29928129 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 133, 40 |
| Conread position: | 306-591 |
| Cow position: | chrX:6885346-6885058 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 306-715 |
| Cow position: | chrX:13417475-13417067 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 308-715 |
| Cow position: | chrX:31081915-31082332 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 325-714 |
| Cow position: | chrX:6250472-6250075 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 336-713 |
| Cow position: | chrX:2012676-2012310 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 341-715 |
| Cow position: | chrX:44387101-44387485 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 365-650 |
| Cow position: | chrX:22488189-22488476 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 373-710 |
| Cow position: | chrX:16699316-16699659 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 373-715 |
| Cow position: | chrX:23041107-23040765 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 397-715 |
| Cow position: | chrX:15980914-15980593 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 119 |
| Conread position: | 410-608 |
| Cow position: | chrX:18954468-18954272 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 38, 6 |
| Conread position: | 410-715 |
| Cow position: | chrX:2482581-2482272 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 411-582 |
| Cow position: | chrX:15598988-15599156 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 411-714 |
| Cow position: | chrX:24484351-24484054 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 416-580 |
| Cow position: | chrX:32467314-32467474 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 416-715 |
| Cow position: | chrX:13413076-13412775 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 416-715 |
| Cow position: | chrX:15127184-15126879 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 416-715 |
| Cow position: | chrX:29096259-29096565 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 5 |
| Conread position: | 457-593 |
| Cow position: | chrX:31187149-31187015 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 457-638 |
| Cow position: | chrX:29947804-29947983 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 457-711 |
| Cow position: | chrX:7030283-7030537 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 57 |
| Conread position: | 457-712 |
| Cow position: | chrX:8588275-8588532 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:2101956-2102213 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:2604145-2604403 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:8479746-8480005 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:12343053-12343309 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:14594868-14595126 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:16812498-16812241 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:20315958-20315707 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:26400080-26399826 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:28562117-28561860 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-713 |
| Cow position: | chrX:32067059-32066807 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-715 |
| Cow position: | chrX:2562760-2562500 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-715 |
| Cow position: | chrX:7751997-7752256 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 55 |
| Conread position: | 457-715 |
| Cow position: | chrX:11464905-11464645 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 57 |
| Conread position: | 457-715 |
| Cow position: | chrX:12280173-12279913 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-715 |
| Cow position: | chrX:18219494-18219754 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 58 |
| Conread position: | 457-715 |
| Cow position: | chrX:20359954-20359694 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-715 |
| Cow position: | chrX:27426223-27425963 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-715 |
| Cow position: | chrX:28634319-28634061 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 57 |
| Conread position: | 457-715 |
| Cow position: | chrX:31493517-31493777 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 56 |
| Conread position: | 465-657 |
| Cow position: | chrX:17478417-17478223 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 168, 49 |
| Conread position: | 465-713 |
| Cow position: | chrX:37849120-37849368 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 49 |
| Conread position: | 465-715 |
| Cow position: | chrX:5336381-5336129 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 49 |
| Conread position: | 465-715 |
| Cow position: | chrX:6872968-6872716 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 49 |
| Conread position: | 465-715 |
| Cow position: | chrX:12353345-12353597 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 49 |
| Conread position: | 465-715 |
| Cow position: | chrX:13076592-13076340 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 49 |
| Conread position: | 465-715 |
| Cow position: | chrX:13097166-13096914 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 49 |
| Conread position: | 465-715 |
| Cow position: | chrX:13398015-13397763 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 49 |
| Conread position: | 465-715 |
| Cow position: | chrX:30055630-30055378 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 49 |
Show alignments to all cow chromosomes.