Cow genome map
| Conread name: | Ova1-OVRM10162G02 |
| Conread position: | 1-187 |
| Cow position: | chr11:58210600-58210789 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 1-211 |
| Cow position: | chr11:46398992-46398791 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 1-222 |
| Cow position: | chr11:4436193-4435978 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-238 |
| Cow position: | chr11:22505115-22504866 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-242 |
| Cow position: | chr11:23128675-23128915 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 31, 122 |
| Conread position: | 1-248 |
| Cow position: | chr11:18891150-18890901 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 126 |
| Conread position: | 1-248 |
| Cow position: | chr11:27243103-27242860 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 1-249 |
| Cow position: | chr11:3266250-3266000 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 151 |
| Conread position: | 1-252 |
| Cow position: | chr11:19508163-19507897 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 1-252 |
| Cow position: | chr11:68206971-68207221 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-254 |
| Cow position: | chr11:14949534-14949788 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 172 |
| Conread position: | 1-254 |
| Cow position: | chr11:46413443-46413195 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 116 |
| Conread position: | 1-256 |
| Cow position: | chr11:697299-697546 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 1-256 |
| Cow position: | chr11:2309740-2309495 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 31, 129 |
| Conread position: | 1-256 |
| Cow position: | chr11:2568688-2568429 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 136, 51 |
| Conread position: | 1-256 |
| Cow position: | chr11:9433190-9432943 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 1-256 |
| Cow position: | chr11:10302325-10302579 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 38, 70 |
| Conread position: | 1-256 |
| Cow position: | chr11:23138194-23138449 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 123 |
| Conread position: | 1-256 |
| Cow position: | chr11:30192040-30191786 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 1-256 |
| Cow position: | chr11:34113133-34112886 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 1-256 |
| Cow position: | chr11:37347344-37347072 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 1-256 |
| Cow position: | chr11:42232472-42232235 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 122, 55 |
| Conread position: | 1-256 |
| Cow position: | chr11:61195554-61195298 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 1-256 |
| Cow position: | chr11:77241237-77240984 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 1-273 |
| Cow position: | chr11:46580223-46579952 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 167, 29 |
| Conread position: | 1-280 |
| Cow position: | chr11:30165377-30165100 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 1-281 |
| Cow position: | chr11:29947062-29947339 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 1-293 |
| Cow position: | chr11:13040292-13040594 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 121 |
| Conread position: | 1-329 |
| Cow position: | chr11:70163772-70163434 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 28, 233 |
| Conread position: | 2-252 |
| Cow position: | chr11:67747151-67746904 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 2-256 |
| Cow position: | chr11:85678451-85678205 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 3-248 |
| Cow position: | chr11:50134283-50134525 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 108 |
| Conread position: | 3-251 |
| Cow position: | chr11:16251381-16251626 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 161 |
| Conread position: | 3-254 |
| Cow position: | chr11:9221858-9222115 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 27, 233 |
| Conread position: | 3-256 |
| Cow position: | chr11:30708364-30708115 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 117 |
| Conread position: | 3-256 |
| Cow position: | chr11:61203031-61202776 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 3-270 |
| Cow position: | chr11:81162567-81162846 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 3-293 |
| Cow position: | chr11:37563331-37563053 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 3-293 |
| Cow position: | chr11:62225852-62225562 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 173, 24 |
| Conread position: | 6-292 |
| Cow position: | chr11:8428359-8428068 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 147 |
| Conread position: | 7-248 |
| Cow position: | chr11:22932113-22932345 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 159, 66 |
| Conread position: | 7-256 |
| Cow position: | chr11:18210484-18210745 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 7-256 |
| Cow position: | chr11:33754043-33754296 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 133, 32 |
| Conread position: | 8-256 |
| Cow position: | chr11:13690431-13690672 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 115 |
| Conread position: | 8-256 |
| Cow position: | chr11:30110828-30110576 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 96 |
| Conread position: | 24-278 |
| Cow position: | chr11:23739267-23739533 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 31-254 |
| Cow position: | chr11:77031520-77031741 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 189, 135 |
| Conread position: | 33-252 |
| Cow position: | chr11:67600599-67600374 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 51-256 |
| Cow position: | chr11:33526889-33526690 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 182, 52 |
| Conread position: | 64-254 |
| Cow position: | chr11:4068246-4068050 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 140-256 |
| Cow position: | chr11:56654249-56654131 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.