Cow genome map
| Conread name: | Ova1-OVRM10162G02 |
| Conread position: | 1-221 |
| Cow position: | chr3:73759654-73759887 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-225 |
| Cow position: | chr3:34316098-34316328 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 180 |
| Conread position: | 1-238 |
| Cow position: | chr3:78945971-78946219 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 1-242 |
| Cow position: | chr3:60174613-60174845 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 1-245 |
| Cow position: | chr3:2903428-2903669 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 1-245 |
| Cow position: | chr3:55815203-55814953 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 236 |
| Conread position: | 1-248 |
| Cow position: | chr3:5097065-5096809 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-248 |
| Cow position: | chr3:39171621-39171878 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 29, 182 |
| Conread position: | 1-251 |
| Cow position: | chr3:75711173-75710936 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 1-252 |
| Cow position: | chr3:6853646-6853881 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 231, 48 |
| Conread position: | 1-252 |
| Cow position: | chr3:15057745-15057988 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 232, 22 |
| Conread position: | 1-252 |
| Cow position: | chr3:33468620-33468878 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-254 |
| Cow position: | chr3:32870010-32869741 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 6, 44 |
| Conread position: | 1-254 |
| Cow position: | chr3:51255649-51255394 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 1-254 |
| Cow position: | chr3:82359906-82359649 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 35, 107 |
| Conread position: | 1-255 |
| Cow position: | chr3:66964435-66964696 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 1-255 |
| Cow position: | chr3:70129946-70130201 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 26, 88 |
| Conread position: | 1-256 |
| Cow position: | chr3:15388077-15387823 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 1-256 |
| Cow position: | chr3:22716418-22716685 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-256 |
| Cow position: | chr3:31419562-31419314 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 147 |
| Conread position: | 1-256 |
| Cow position: | chr3:38497809-38497562 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 232, 20 |
| Conread position: | 1-256 |
| Cow position: | chr3:45647542-45647274 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 32, 258 |
| Conread position: | 1-256 |
| Cow position: | chr3:53222780-53223030 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 141 |
| Conread position: | 1-256 |
| Cow position: | chr3:54862557-54862830 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 235 |
| Conread position: | 1-256 |
| Cow position: | chr3:60854977-60855244 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-256 |
| Cow position: | chr3:65413418-65413669 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 229, 72 |
| Conread position: | 1-256 |
| Cow position: | chr3:65581153-65581416 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 1-256 |
| Cow position: | chr3:77271411-77271659 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 120, 26 |
| Conread position: | 1-270 |
| Cow position: | chr3:17936973-17937248 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 171 |
| Conread position: | 1-270 |
| Cow position: | chr3:58350448-58350181 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 3-216 |
| Cow position: | chr3:52722140-52722346 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 3-256 |
| Cow position: | chr3:51234237-51234498 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 178 |
| Conread position: | 3-263 |
| Cow position: | chr3:45343006-45342737 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 181 |
| Conread position: | 3-279 |
| Cow position: | chr3:9843447-9843174 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 124 |
| Conread position: | 3-296 |
| Cow position: | chr3:73417384-73417081 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 4-252 |
| Cow position: | chr3:4332226-4331979 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 25, 149 |
| Conread position: | 5-256 |
| Cow position: | chr3:22354012-22353762 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 6-241 |
| Cow position: | chr3:55085326-55085557 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 158 |
| Conread position: | 15-278 |
| Cow position: | chr3:30701170-30700915 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 21, 133 |
| Conread position: | 18-253 |
| Cow position: | chr3:27544490-27544713 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 214, 9 |
| Conread position: | 19-229 |
| Cow position: | chr3:11031101-11031300 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 30-289 |
| Cow position: | chr3:16890566-16890298 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 259 |
| Conread position: | 37-222 |
| Cow position: | chr3:15549313-15549129 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 120, 73 |
| Conread position: | 73-256 |
| Cow position: | chr3:6883111-6882920 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 111-256 |
| Cow position: | chr3:30385016-30384866 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 133-256 |
| Cow position: | chr3:20092996-20093118 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 140-295 |
| Cow position: | chr3:3985014-3984860 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 31 |
Show alignments to all cow chromosomes.