Cow genome map
| Conread name: | Ova1-OVRM10162G02 |
| Conread position: | 1-210 |
| Cow position: | chrX:30355592-30355386 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 168, 28 |
| Conread position: | 1-215 |
| Cow position: | chrX:6607335-6607119 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 127 |
| Conread position: | 1-222 |
| Cow position: | chrX:21004594-21004361 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 1-231 |
| Cow position: | chrX:23514103-23514345 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 1-231 |
| Cow position: | chrX:45466154-45465928 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 1-240 |
| Cow position: | chrX:13323084-13323335 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-248 |
| Cow position: | chrX:16732820-16733070 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 1-248 |
| Cow position: | chrX:41403888-41403637 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 1-248 |
| Cow position: | chrX:41410436-41410185 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 1-252 |
| Cow position: | chrX:7513426-7513163 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 29, 110 |
| Conread position: | 1-252 |
| Cow position: | chrX:11674977-11674730 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 159 |
| Conread position: | 1-252 |
| Cow position: | chrX:14884046-14884290 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 1-253 |
| Cow position: | chrX:39558438-39558696 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-254 |
| Cow position: | chrX:1978427-1978166 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 154 |
| Conread position: | 1-254 |
| Cow position: | chrX:4043940-4044188 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 1-254 |
| Cow position: | chrX:26883220-26883479 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 178 |
| Conread position: | 1-255 |
| Cow position: | chrX:9538474-9538213 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 29, 175 |
| Conread position: | 1-255 |
| Cow position: | chrX:16284033-16284305 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-255 |
| Cow position: | chrX:23414449-23414713 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 1-256 |
| Cow position: | chrX:2147250-2146986 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 183 |
| Conread position: | 1-256 |
| Cow position: | chrX:2300839-2300599 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 1-256 |
| Cow position: | chrX:9838054-9837788 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-256 |
| Cow position: | chrX:13058495-13058232 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-256 |
| Cow position: | chrX:13785451-13785710 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 1-256 |
| Cow position: | chrX:19228151-19228405 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 1-256 |
| Cow position: | chrX:26625758-26626017 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 171 |
| Conread position: | 1-256 |
| Cow position: | chrX:32128071-32128326 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 1-256 |
| Cow position: | chrX:32310021-32309769 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 1-256 |
| Cow position: | chrX:34543698-34543431 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 1-256 |
| Cow position: | chrX:34662938-34663191 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 171, 28 |
| Conread position: | 1-256 |
| Cow position: | chrX:38935197-38934923 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-256 |
| Cow position: | chrX:40692839-40693092 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 1-256 |
| Cow position: | chrX:44961660-44961381 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-256 |
| Cow position: | chrX:46044959-46044687 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 1-257 |
| Cow position: | chrX:27287822-27288075 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 136, 28 |
| Conread position: | 1-261 |
| Cow position: | chrX:37489638-37489380 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 1-261 |
| Cow position: | chrX:47243362-47243639 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 28, 228 |
| Conread position: | 1-279 |
| Cow position: | chrX:23970296-23970004 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 1-296 |
| Cow position: | chrX:35681250-35680957 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 2-256 |
| Cow position: | chrX:42492604-42492862 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 2-278 |
| Cow position: | chrX:32420130-32419836 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 25, 289 |
| Conread position: | 2-285 |
| Cow position: | chrX:10831582-10831870 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 131 |
| Conread position: | 2-291 |
| Cow position: | chrX:1514496-1514793 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 27 |
| Conread position: | 2-293 |
| Cow position: | chrX:10412074-10412356 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 3-252 |
| Cow position: | chrX:7509052-7508799 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 3-252 |
| Cow position: | chrX:41884504-41884765 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-254 |
| Cow position: | chrX:15049391-15049142 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 3-256 |
| Cow position: | chrX:22624394-22624124 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 3-270 |
| Cow position: | chrX:33827108-33827379 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 26, 167 |
| Conread position: | 3-333 |
| Cow position: | chrX:41199012-41198677 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 260 |
| Conread position: | 5-256 |
| Cow position: | chrX:3130490-3130232 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 5-256 |
| Cow position: | chrX:46532598-46532852 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 122 |
| Conread position: | 11-231 |
| Cow position: | chrX:45976779-45976564 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 15-256 |
| Cow position: | chrX:33855335-33855572 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 21, 140 |
| Conread position: | 25-240 |
| Cow position: | chrX:6277544-6277772 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 43-270 |
| Cow position: | chrX:48310499-48310722 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 68-255 |
| Cow position: | chrX:12724631-12724438 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 71-254 |
| Cow position: | chrX:29055842-29055662 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 162, 99 |
| Conread position: | 139-256 |
| Cow position: | chrX:10394430-10394311 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.