Cow genome map
| Conread name: | Ova1-OVRM10173D01 |
| Conread position: | 269-537 |
| Cow position: | chr12:39356825-39357104 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 278-486 |
| Cow position: | chr12:20655140-20654920 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 151 |
| Conread position: | 278-510 |
| Cow position: | chr12:25357715-25357472 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 87 |
| Conread position: | 278-531 |
| Cow position: | chr12:26777630-26777373 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 278-532 |
| Cow position: | chr12:45630281-45630025 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 278-533 |
| Cow position: | chr12:28572225-28572484 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 278-533 |
| Cow position: | chr12:35755120-35754863 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 21, 171 |
| Conread position: | 278-533 |
| Cow position: | chr12:37514707-37514448 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 278-533 |
| Cow position: | chr12:40806918-40807178 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 278-646 |
| Cow position: | chr12:3196769-3197132 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 278-676 |
| Cow position: | chr12:19871962-19872346 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 278-677 |
| Cow position: | chr12:9142916-9143306 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 278-677 |
| Cow position: | chr12:31228100-31228494 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 278-678 |
| Cow position: | chr12:19868988-19869390 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 161 |
| Conread position: | 278-678 |
| Cow position: | chr12:28650437-28650876 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 249 |
| Conread position: | 278-679 |
| Cow position: | chr12:7001088-7000682 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 188 |
| Conread position: | 278-679 |
| Cow position: | chr12:15938728-15938344 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 278-679 |
| Cow position: | chr12:19865764-19866164 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 278-679 |
| Cow position: | chr12:27563861-27563457 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 216 |
| Conread position: | 278-679 |
| Cow position: | chr12:31430044-31429648 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 191 |
| Conread position: | 279-532 |
| Cow position: | chr12:19696929-19697197 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 216 |
| Conread position: | 279-678 |
| Cow position: | chr12:11835764-11836152 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 174 |
| Conread position: | 279-678 |
| Cow position: | chr12:40910756-40910370 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 280-530 |
| Cow position: | chr12:16961127-16961389 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 103, 78 |
| Conread position: | 280-674 |
| Cow position: | chr12:25606216-25606619 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 20, 147 |
| Conread position: | 280-676 |
| Cow position: | chr12:1774137-1773746 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 281-679 |
| Cow position: | chr12:18944127-18943736 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 283-678 |
| Cow position: | chr12:1890067-1889659 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 314 |
| Conread position: | 284-679 |
| Cow position: | chr12:17716601-17716996 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 286-678 |
| Cow position: | chr12:2711018-2711417 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 116 |
| Conread position: | 288-679 |
| Cow position: | chr12:44014302-44013914 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 291-532 |
| Cow position: | chr12:30918965-30919213 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 9, 132 |
| Conread position: | 303-467 |
| Cow position: | chr12:12178093-12178263 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 67, 141 |
| Conread position: | 305-537 |
| Cow position: | chr12:26203413-26203650 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 306-676 |
| Cow position: | chr12:34385949-34385594 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 307-512 |
| Cow position: | chr12:21828631-21828845 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 143 |
| Conread position: | 307-512 |
| Cow position: | chr12:47800266-47800057 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 147 |
| Conread position: | 323-679 |
| Cow position: | chr12:8869329-8868955 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 330-533 |
| Cow position: | chr12:30170232-30170449 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 330-678 |
| Cow position: | chr12:40158665-40158317 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 334-679 |
| Cow position: | chr12:29969152-29969501 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 145 |
| Conread position: | 335-613 |
| Cow position: | chr12:39486008-39486280 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 341-679 |
| Cow position: | chr12:33457710-33458067 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 132 |
| Conread position: | 349-672 |
| Cow position: | chr12:19508981-19508650 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 386-619 |
| Cow position: | chr12:29762975-29762741 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 158 |
| Conread position: | 386-629 |
| Cow position: | chr12:7108819-7109054 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 61, 152 |
| Conread position: | 386-672 |
| Cow position: | chr12:28011265-28010984 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 386-679 |
| Cow position: | chr12:30753360-30753645 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 117 |
| Conread position: | 386-679 |
| Cow position: | chr12:42254295-42254589 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 387-679 |
| Cow position: | chr12:42181503-42181216 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 388-532 |
| Cow position: | chr12:15121978-15122117 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 388-675 |
| Cow position: | chr12:1245930-1246219 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 93, 157 |
| Conread position: | 392-664 |
| Cow position: | chr12:22124660-22124927 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 169, 61 |
| Conread position: | 392-664 |
| Cow position: | chr12:22132330-22132064 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 169, 61 |
| Conread position: | 392-676 |
| Cow position: | chr12:35218764-35218485 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 402-533 |
| Cow position: | chr12:18577496-18577631 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 402-618 |
| Cow position: | chr12:18020502-18020709 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 134 |
| Conread position: | 416-678 |
| Cow position: | chr12:30605489-30605244 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 420-676 |
| Cow position: | chr12:46143490-46143743 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 433-532 |
| Cow position: | chr12:4719267-4719367 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 440-679 |
| Cow position: | chr12:20777241-20777001 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 133, 44 |
| Conread position: | 446-679 |
| Cow position: | chr12:30590471-30590689 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 159, 96 |
| Conread position: | 452-679 |
| Cow position: | chr12:1848838-1848612 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 462-674 |
| Cow position: | chr12:4134375-4134588 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 52, 139 |
Show alignments to all cow chromosomes.