Cow genome map

Conread name: Ova1-OVRM10173D01

Conread position: 234-679
Cow position: chr21:5596726-5597174 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 308
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 19, 102

Conread position: 245-677
Cow position: chr21:12616734-12617159 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 289
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 56, 62

Conread position: 253-674
Cow position: chr21:8290047-8289617 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 298
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 28, 69

Conread position: 254-679
Cow position: chr21:7582305-7581878 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 299
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 46, 76

Conread position: 274-533
Cow position: chr21:4794839-4795109 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 8, 61

Conread position: 274-679
Cow position: chr21:34738219-34738634 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 59

Conread position: 276-679
Cow position: chr21:21000434-21000014 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 268
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 265

Conread position: 277-678
Cow position: chr21:28810632-28810240 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 277
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 70

Conread position: 278-446
Cow position: chr21:1058423-1058603 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 72

Conread position: 278-453
Cow position: chr21:44861637-44861452 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 146

Conread position: 278-473
Cow position: chr21:471247-471458 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 278-504
Cow position: chr21:10071305-10071074 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 23, 52

Conread position: 278-525
Cow position: chr21:15742479-15742215 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 23, 69

Conread position: 278-532
Cow position: chr21:9863001-9862742 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 22, 63

Conread position: 278-532
Cow position: chr21:48262754-48263014 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 18, 46

Conread position: 278-533
Cow position: chr21:5566604-5566874 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 27, 183

Conread position: 278-533
Cow position: chr21:9981064-9980817 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 52

Conread position: 278-533
Cow position: chr21:30626558-30626302 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 21, 26

Conread position: 278-533
Cow position: chr21:48638119-48637862 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 94, 18

Conread position: 278-664
Cow position: chr21:38867942-38867563 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 252
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 29

Conread position: 278-672
Cow position: chr21:81694-82096 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 71

Conread position: 278-672
Cow position: chr21:4079978-4080376 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 22, 64

Conread position: 278-672
Cow position: chr21:7564698-7564300 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 277
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 52

Conread position: 278-673
Cow position: chr21:24607020-24607401 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 68

Conread position: 278-676
Cow position: chr21:45866563-45866953 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 262
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 21, 63

Conread position: 278-677
Cow position: chr21:725264-724864 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 266
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 23, 58

Conread position: 278-677
Cow position: chr21:10514436-10514826 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 276
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 21, 47

Conread position: 278-677
Cow position: chr21:33209823-33210224 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 55

Conread position: 278-677
Cow position: chr21:33983186-33982784 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 274
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 21, 55

Conread position: 278-677
Cow position: chr21:36297120-36297512 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 285
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 46

Conread position: 278-677
Cow position: chr21:42464223-42463812 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 299
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 22, 167

Conread position: 278-679
Cow position: chr21:14760202-14760596 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 278
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 22, 134

Conread position: 278-679
Cow position: chr21:18494604-18494993 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 288
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 22, 52

Conread position: 278-679
Cow position: chr21:20925881-20925482 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 283
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 22, 52

Conread position: 278-679
Cow position: chr21:28881773-28882159 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 267
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 171

Conread position: 278-679
Cow position: chr21:28989236-28989632 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 195

Conread position: 278-679
Cow position: chr21:34391342-34390951 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 290
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 22, 52

Conread position: 278-679
Cow position: chr21:42500660-42501063 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 283
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 22, 52

Conread position: 278-679
Cow position: chr21:42914120-42913721 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 52

Conread position: 278-679
Cow position: chr21:48484816-48484423 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 290
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 46

Conread position: 279-675
Cow position: chr21:34658663-34659054 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 274
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 90, 21

Conread position: 279-677
Cow position: chr21:25764260-25764655 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 285
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 20, 57

Conread position: 280-467
Cow position: chr21:49662795-49662600 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 181

Conread position: 280-533
Cow position: chr21:20549296-20549027 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 24, 64

Conread position: 280-674
Cow position: chr21:28512167-28512548 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 18, 67

Conread position: 281-635
Cow position: chr21:26852876-26853233 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 243
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 29

Conread position: 281-677
Cow position: chr21:20262707-20262312 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 288
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 20, 49

Conread position: 282-511
Cow position: chr21:12325661-12325898 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 107

Conread position: 286-679
Cow position: chr21:9415875-9416272 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 13, 44

Conread position: 288-512
Cow position: chr21:32574358-32574596 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 12, 0

Conread position: 289-677
Cow position: chr21:44671388-44671773 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 11, 35

Conread position: 297-679
Cow position: chr21:4399444-4399827 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 30

Conread position: 303-678
Cow position: chr21:23672394-23672773 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 150

Conread position: 303-679
Cow position: chr21:45474105-45473730 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 241
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 141

Conread position: 306-533
Cow position: chr21:45971502-45971274 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 23

Conread position: 307-662
Cow position: chr21:30232045-30231684 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 236
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 43

Conread position: 309-676
Cow position: chr21:641243-641607 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 261
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 65, 20

Conread position: 311-628
Cow position: chr21:41579392-41579715 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 75, 60

Conread position: 316-650
Cow position: chr21:7132803-7132466 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 227
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 19

Conread position: 317-679
Cow position: chr21:24887654-24888032 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 277
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 100

Conread position: 320-679
Cow position: chr21:41974716-41974351 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 251
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 55, 22

Conread position: 334-679
Cow position: chr21:8985224-8985570 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 38, 220

Conread position: 335-532
Cow position: chr21:28029073-28029280 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 335-533
Cow position: chr21:24857987-24858195 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 0

Conread position: 339-679
Cow position: chr21:31691161-31691506 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 33, 123

Conread position: 382-679
Cow position: chr21:42384239-42384534 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 58

Conread position: 385-677
Cow position: chr21:33350480-33350762 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 99, 54

Conread position: 386-533
Cow position: chr21:31278518-31278663 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 59

Conread position: 386-676
Cow position: chr21:43357525-43357238 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 60, 99

Conread position: 386-679
Cow position: chr21:393757-394043 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 208
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 96, 157

Conread position: 386-679
Cow position: chr21:10727017-10727301 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 158, 0

Conread position: 386-679
Cow position: chr21:28734176-28733890 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 99, 136

Conread position: 386-679
Cow position: chr21:36762789-36763073 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 194
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 93, 163

Conread position: 387-532
Cow position: chr21:27406467-27406328 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 387-679
Cow position: chr21:36793619-36793916 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 100, 174

Conread position: 387-679
Cow position: chr21:47802525-47802238 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 34, 30

Conread position: 389-679
Cow position: chr21:6713800-6713502 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 124

Conread position: 397-677
Cow position: chr21:6833799-6834072 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 192
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 27

Conread position: 399-679
Cow position: chr21:23322332-23322054 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 191
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 85

Conread position: 401-679
Cow position: chr21:5636970-5636694 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 192
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 83, 198

Conread position: 403-679
Cow position: chr21:42905622-42905352 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 76, 36

Conread position: 414-679
Cow position: chr21:15445315-15445049 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 70, 131

Conread position: 420-672
Cow position: chr21:42348908-42348657 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 59, 115

Conread position: 420-679
Cow position: chr21:9278138-9278405 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 190

Conread position: 446-677
Cow position: chr21:8618070-8618299 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 76

Conread position: 446-679
Cow position: chr21:33517-33745 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 157
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 105

Conread position: 449-679
Cow position: chr21:41597614-41597845 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 30, 101

Conread position: 451-678
Cow position: chr21:33791567-33791343 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 73

Conread position: 455-679
Cow position: chr21:31253340-31253568 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 29, 61

Conread position: 456-677
Cow position: chr21:35569578-35569359 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 121, 28

Conread position: 456-679
Cow position: chr21:13585252-13585030 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 32

Conread position: 461-678
Cow position: chr21:47764301-47764092 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 123, 92

Conread position: 462-678
Cow position: chr21:40589671-40589462 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 75

Conread position: 465-679
Cow position: chr21:30607273-30607065 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 80

Conread position: 466-679
Cow position: chr21:37345286-37345073 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 143
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 13, 131

Conread position: 542-679
Cow position: chr21:33997349-33997205 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 114

Show alignments to all cow chromosomes.