Cow genome map
| Conread name: | Ova1-OVRM10173D01 |
| Conread position: | 249-676 |
| Cow position: | chr27:10992790-10992356 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 253-533 |
| Cow position: | chr27:23452898-23452616 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 23 |
| Conread position: | 264-674 |
| Cow position: | chr27:20636666-20637065 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 277-532 |
| Cow position: | chr27:26412877-26413118 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 277-679 |
| Cow position: | chr27:25277569-25277137 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 23, 171 |
| Conread position: | 278-446 |
| Cow position: | chr27:21578170-21578348 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 278-447 |
| Cow position: | chr27:9169276-9169455 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 278-533 |
| Cow position: | chr27:12191047-12191313 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 250 |
| Conread position: | 278-533 |
| Cow position: | chr27:13273614-13273870 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 278-533 |
| Cow position: | chr27:26313805-26314061 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 278-537 |
| Cow position: | chr27:21283477-21283210 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 278-663 |
| Cow position: | chr27:28018731-28018345 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 278-672 |
| Cow position: | chr27:16620382-16619991 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 293 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 278-672 |
| Cow position: | chr27:21408155-21408558 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 278-675 |
| Cow position: | chr27:17473216-17472809 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 278-676 |
| Cow position: | chr27:11255909-11255519 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 278-676 |
| Cow position: | chr27:21350619-21351022 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 283 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 278-677 |
| Cow position: | chr27:4673411-4673017 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 278-677 |
| Cow position: | chr27:13638571-13638996 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 278-677 |
| Cow position: | chr27:17397059-17397453 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 278-678 |
| Cow position: | chr27:13198300-13197917 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 94, 50 |
| Conread position: | 278-678 |
| Cow position: | chr27:13876122-13875728 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 278-679 |
| Cow position: | chr27:9090399-9090807 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 275 |
| Conread position: | 278-679 |
| Cow position: | chr27:22418371-22418771 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 284 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 278-679 |
| Cow position: | chr27:23128848-23128452 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 279-530 |
| Cow position: | chr27:23502856-23502603 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 93, 52 |
| Conread position: | 280-533 |
| Cow position: | chr27:23472647-23472392 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 63 |
| Conread position: | 280-666 |
| Cow position: | chr27:6074309-6073929 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 281-536 |
| Cow position: | chr27:14669988-14670247 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 282-676 |
| Cow position: | chr27:8291621-8292006 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 282-679 |
| Cow position: | chr27:1058284-1058683 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 137 |
| Conread position: | 283-677 |
| Cow position: | chr27:27040987-27040603 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 285-533 |
| Cow position: | chr27:24445763-24446020 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 286-663 |
| Cow position: | chr27:732951-732581 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 287-508 |
| Cow position: | chr27:26300228-26300000 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 13, 174 |
| Conread position: | 288-679 |
| Cow position: | chr27:7958450-7958845 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 297-625 |
| Cow position: | chr27:264622-264307 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 303-533 |
| Cow position: | chr27:15454581-15454348 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 306-676 |
| Cow position: | chr27:12231544-12231911 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 334-673 |
| Cow position: | chr27:26427783-26428131 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 40, 197 |
| Conread position: | 335-532 |
| Cow position: | chr27:27449093-27449297 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 337-536 |
| Cow position: | chr27:299041-299250 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 338-677 |
| Cow position: | chr27:8629533-8629875 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 179 |
| Conread position: | 344-532 |
| Cow position: | chr27:28207127-28206935 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 373-679 |
| Cow position: | chr27:22723417-22723709 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 110, 5 |
| Conread position: | 385-533 |
| Cow position: | chr27:22035092-22035237 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 386-532 |
| Cow position: | chr27:9978110-9977964 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 98, 54 |
| Conread position: | 386-617 |
| Cow position: | chr27:15858807-15859022 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 386-624 |
| Cow position: | chr27:18922734-18922511 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 219, 148 |
| Conread position: | 386-677 |
| Cow position: | chr27:22171582-22171298 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 386-679 |
| Cow position: | chr27:4385781-4386065 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 98, 158 |
| Conread position: | 386-679 |
| Cow position: | chr27:30362527-30362242 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 99, 124 |
| Conread position: | 387-679 |
| Cow position: | chr27:28931506-28931798 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 393-676 |
| Cow position: | chr27:18544275-18543993 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 152 |
| Conread position: | 398-677 |
| Cow position: | chr27:12429684-12429402 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 402-673 |
| Cow position: | chr27:30406763-30407035 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 404-679 |
| Cow position: | chr27:6550717-6550453 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 80, 131 |
| Conread position: | 414-679 |
| Cow position: | chr27:23930220-23929972 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 420-533 |
| Cow position: | chr27:22293462-22293576 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 420-533 |
| Cow position: | chr27:24014491-24014604 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 420-656 |
| Cow position: | chr27:26436624-26436862 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 150, 129 |
| Conread position: | 420-670 |
| Cow position: | chr27:2930346-2930594 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 125 |
| Conread position: | 421-678 |
| Cow position: | chr27:26398010-26398261 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 157, 124 |
| Conread position: | 423-679 |
| Cow position: | chr27:28518532-28518291 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 430-679 |
| Cow position: | chr27:6541865-6541625 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 107 |
| Conread position: | 431-678 |
| Cow position: | chr27:14902410-14902655 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 119 |
| Conread position: | 433-672 |
| Cow position: | chr27:6500302-6500061 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 104 |
| Conread position: | 433-676 |
| Cow position: | chr27:26440821-26441062 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 447-677 |
| Cow position: | chr27:27640769-27641004 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 117, 103 |
| Conread position: | 541-679 |
| Cow position: | chr27:12596908-12596761 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 81, 27 |
Show alignments to all cow chromosomes.