Cow genome map
| Conread name: | Ova1-OVRM10173D01 |
| Conread position: | 239-533 |
| Cow position: | chr28:10977393-10977692 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 269-533 |
| Cow position: | chr28:30327526-30327256 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 278-441 |
| Cow position: | chr28:32365530-32365701 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 278-512 |
| Cow position: | chr28:9851214-9851435 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 278-532 |
| Cow position: | chr28:25399450-25399714 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 278-612 |
| Cow position: | chr28:10295757-10296082 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 278-613 |
| Cow position: | chr28:16211526-16211201 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 278-614 |
| Cow position: | chr28:3256369-3256688 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 100, 51 |
| Conread position: | 278-615 |
| Cow position: | chr28:21104278-21103952 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 22, 143 |
| Conread position: | 278-615 |
| Cow position: | chr28:23793759-23793410 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 180 |
| Conread position: | 278-629 |
| Cow position: | chr28:22372088-22371770 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 278-641 |
| Cow position: | chr28:8372048-8372396 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 278-673 |
| Cow position: | chr28:25826292-25825909 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 201, 84 |
| Conread position: | 278-677 |
| Cow position: | chr28:3144321-3143922 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 278-677 |
| Cow position: | chr28:3914276-3914675 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 278-677 |
| Cow position: | chr28:7751721-7751339 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 278-678 |
| Cow position: | chr28:5792273-5792671 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 278-679 |
| Cow position: | chr28:4308309-4307938 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 23, 58 |
| Conread position: | 278-679 |
| Cow position: | chr28:6577220-6577607 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 278-679 |
| Cow position: | chr28:16215330-16214938 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 278-679 |
| Cow position: | chr28:18790581-18790984 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 278-679 |
| Cow position: | chr28:21354790-21355189 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 278-679 |
| Cow position: | chr28:21598687-21598288 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 280-442 |
| Cow position: | chr28:25248936-25249107 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 280-452 |
| Cow position: | chr28:25424780-25424599 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 280-491 |
| Cow position: | chr28:6090728-6090944 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 280-533 |
| Cow position: | chr28:7372683-7372426 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 280-533 |
| Cow position: | chr28:14742366-14742626 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 280-679 |
| Cow position: | chr28:5768770-5769164 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 280-679 |
| Cow position: | chr28:18590831-18591233 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 55 |
| Conread position: | 281-532 |
| Cow position: | chr28:1316221-1315967 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 281-679 |
| Cow position: | chr28:1837569-1837960 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 18, 162 |
| Conread position: | 281-679 |
| Cow position: | chr28:17030123-17029754 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 282-679 |
| Cow position: | chr28:5930922-5931319 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 283-678 |
| Cow position: | chr28:25806168-25806537 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 283-679 |
| Cow position: | chr28:26103298-26103674 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 165 |
| Conread position: | 286-533 |
| Cow position: | chr28:16440973-16441212 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 286-679 |
| Cow position: | chr28:20312847-20313241 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 286-679 |
| Cow position: | chr28:26922802-26922401 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 288-523 |
| Cow position: | chr28:32174225-32174469 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 136 |
| Conread position: | 288-676 |
| Cow position: | chr28:30294011-30293623 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 297-533 |
| Cow position: | chr28:16925626-16925385 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 303-533 |
| Cow position: | chr28:12430198-12430435 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 303-678 |
| Cow position: | chr28:27428315-27428708 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 303-679 |
| Cow position: | chr28:4021975-4022351 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 303-679 |
| Cow position: | chr28:33031823-33032224 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 304-677 |
| Cow position: | chr28:28163690-28164050 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 306-512 |
| Cow position: | chr28:3770081-3769850 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 307-531 |
| Cow position: | chr28:7268343-7268113 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 131 |
| Conread position: | 307-616 |
| Cow position: | chr28:11356338-11356025 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 190 |
| Conread position: | 334-537 |
| Cow position: | chr28:30977903-30978111 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 334-672 |
| Cow position: | chr28:12049096-12048744 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 225 |
| Conread position: | 334-677 |
| Cow position: | chr28:8682232-8681878 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 334-679 |
| Cow position: | chr28:2280051-2279700 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 334-679 |
| Cow position: | chr28:23839829-23840167 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 111 |
| Conread position: | 382-629 |
| Cow position: | chr28:3161404-3161163 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 386-532 |
| Cow position: | chr28:3750997-3751143 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 386-532 |
| Cow position: | chr28:34561036-34561183 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 386-533 |
| Cow position: | chr28:3024231-3024086 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 386-534 |
| Cow position: | chr28:3427183-3427037 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 386-672 |
| Cow position: | chr28:10744883-10745171 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 73, 163 |
| Conread position: | 386-674 |
| Cow position: | chr28:17738400-17738113 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 386-677 |
| Cow position: | chr28:3000933-3000634 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 194, 92 |
| Conread position: | 386-678 |
| Cow position: | chr28:5826626-5826916 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 95, 146 |
| Conread position: | 386-678 |
| Cow position: | chr28:19222916-19222632 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 187, 70 |
| Conread position: | 386-679 |
| Cow position: | chr28:8347400-8347697 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 386-679 |
| Cow position: | chr28:33163779-33163498 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 219, 29 |
| Conread position: | 392-677 |
| Cow position: | chr28:7549378-7549096 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 206, 152 |
| Conread position: | 402-675 |
| Cow position: | chr28:10669268-10669537 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 120 |
| Conread position: | 420-679 |
| Cow position: | chr28:31110293-31110038 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 153, 124 |
| Conread position: | 421-679 |
| Cow position: | chr28:9390652-9390399 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 103 |
| Conread position: | 426-679 |
| Cow position: | chr28:26784750-26784499 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 433-678 |
| Cow position: | chr28:11866968-11866702 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 433-679 |
| Cow position: | chr28:15263999-15263751 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 434-679 |
| Cow position: | chr28:26743348-26743590 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 83 |
| Conread position: | 437-678 |
| Cow position: | chr28:23410596-23410360 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 109 |
| Conread position: | 446-678 |
| Cow position: | chr28:24996851-24996624 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 451-676 |
| Cow position: | chr28:24368208-24367969 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 456-662 |
| Cow position: | chr28:16354872-16354656 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 147, 99 |
| Conread position: | 456-673 |
| Cow position: | chr28:33051768-33051988 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 456-679 |
| Cow position: | chr28:5773390-5773602 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 149, 28 |
| Conread position: | 457-677 |
| Cow position: | chr28:21502144-21502357 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 114, 87 |
| Conread position: | 458-679 |
| Cow position: | chr28:22321172-22321392 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 536-679 |
| Cow position: | chr28:18760234-18760082 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.