Cow genome map
| Conread name: | Ova1-OVRM10173D01 |
| Conread position: | 278-492 |
| Cow position: | chr29:36428726-36428514 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 278-512 |
| Cow position: | chr29:6771539-6771791 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 133 |
| Conread position: | 278-526 |
| Cow position: | chr29:38247192-38246934 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 278-532 |
| Cow position: | chr29:457487-457229 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 278-533 |
| Cow position: | chr29:2136546-2136279 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 278-533 |
| Cow position: | chr29:4084626-4084885 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 278-533 |
| Cow position: | chr29:7290468-7290712 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 278-533 |
| Cow position: | chr29:21665534-21665789 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 278-533 |
| Cow position: | chr29:26778450-26778703 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 165 |
| Conread position: | 278-533 |
| Cow position: | chr29:45006057-45005800 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 210 |
| Conread position: | 278-539 |
| Cow position: | chr29:7664208-7663928 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 278-616 |
| Cow position: | chr29:32644468-32644810 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 172 |
| Conread position: | 278-618 |
| Cow position: | chr29:4875346-4875004 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 278-619 |
| Cow position: | chr29:19756006-19756337 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 278-637 |
| Cow position: | chr29:29065986-29066335 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 278-645 |
| Cow position: | chr29:686632-686260 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 278-672 |
| Cow position: | chr29:465840-465446 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 278-673 |
| Cow position: | chr29:13616095-13615684 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 278-674 |
| Cow position: | chr29:16609299-16609696 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 278-675 |
| Cow position: | chr29:36216680-36217070 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 278-676 |
| Cow position: | chr29:87453-87060 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 278-676 |
| Cow position: | chr29:2744712-2744316 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 278-677 |
| Cow position: | chr29:11696093-11696487 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 278-678 |
| Cow position: | chr29:95020-94596 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 278-678 |
| Cow position: | chr29:10652893-10653299 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 282 |
| Conread position: | 278-678 |
| Cow position: | chr29:15941085-15940676 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 255 |
| Conread position: | 278-679 |
| Cow position: | chr29:17533-17152 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 22, 67 |
| Conread position: | 278-679 |
| Cow position: | chr29:1021831-1022254 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 278-679 |
| Cow position: | chr29:1324997-1325399 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 23, 146 |
| Conread position: | 278-679 |
| Cow position: | chr29:18749022-18748637 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 167 |
| Conread position: | 278-679 |
| Cow position: | chr29:19428226-19428618 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 278-679 |
| Cow position: | chr29:29056736-29057138 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 22, 248 |
| Conread position: | 278-679 |
| Cow position: | chr29:36530423-36530824 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 278-679 |
| Cow position: | chr29:40096524-40096922 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 279-463 |
| Cow position: | chr29:868354-868548 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 17, 148 |
| Conread position: | 279-676 |
| Cow position: | chr29:21443786-21443385 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 272 |
| Conread position: | 279-679 |
| Cow position: | chr29:4120413-4120807 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 280-532 |
| Cow position: | chr29:6775424-6775167 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 280-672 |
| Cow position: | chr29:15944133-15944523 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 280-676 |
| Cow position: | chr29:17408893-17409291 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 280-679 |
| Cow position: | chr29:24345904-24345492 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 281-679 |
| Cow position: | chr29:32290164-32290567 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 282-677 |
| Cow position: | chr29:17606979-17607372 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 286-675 |
| Cow position: | chr29:5948230-5947838 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 277 |
| Conread position: | 286-679 |
| Cow position: | chr29:24623810-24624205 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 287-679 |
| Cow position: | chr29:24952249-24952647 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 289-512 |
| Cow position: | chr29:27872978-27873206 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 10, 156 |
| Conread position: | 303-679 |
| Cow position: | chr29:6635689-6636058 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 306-661 |
| Cow position: | chr29:18963325-18963676 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 141 |
| Conread position: | 334-679 |
| Cow position: | chr29:39567296-39567646 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 221 |
| Conread position: | 383-679 |
| Cow position: | chr29:19907028-19907314 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 96, 54 |
| Conread position: | 384-551 |
| Cow position: | chr29:41347219-41347387 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 386-532 |
| Cow position: | chr29:36356525-36356669 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 386-533 |
| Cow position: | chr29:31899349-31899204 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 386-663 |
| Cow position: | chr29:38581640-38581919 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 128, 112 |
| Conread position: | 386-677 |
| Cow position: | chr29:26616065-26615765 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 224 |
| Conread position: | 386-677 |
| Cow position: | chr29:29974715-29975000 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 98, 34 |
| Conread position: | 386-679 |
| Cow position: | chr29:9686338-9686043 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 174 |
| Conread position: | 386-679 |
| Cow position: | chr29:9709370-9709654 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 392-677 |
| Cow position: | chr29:28195839-28195556 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 396-533 |
| Cow position: | chr29:40621247-40621112 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 397-679 |
| Cow position: | chr29:2071886-2071614 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 210, 137 |
| Conread position: | 403-533 |
| Cow position: | chr29:4328122-4328252 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 81, 100 |
| Conread position: | 419-679 |
| Cow position: | chr29:8164159-8163899 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 128 |
| Conread position: | 446-679 |
| Cow position: | chr29:2984618-2984847 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 127, 38 |
| Conread position: | 446-679 |
| Cow position: | chr29:8669087-8669324 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 446-679 |
| Cow position: | chr29:19338710-19338946 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 35, 105 |
| Conread position: | 456-676 |
| Cow position: | chr29:19389227-19389443 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 456-679 |
| Cow position: | chr29:4804974-4805191 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 456-679 |
| Cow position: | chr29:37599463-37599250 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 457-679 |
| Cow position: | chr29:9139150-9139372 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 458-679 |
| Cow position: | chr29:12784212-12783997 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 465-679 |
| Cow position: | chr29:11915567-11915779 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 7 |
Show alignments to all cow chromosomes.