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Cow genome map

           
Conread name:
           
Ova1-OVRM10196B05
        

               
Conread position:
               
5-234
               

               
Cow position:
               
chr1:8330372-8330135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
5-611
               

               
Cow position:
               
chr1:101858336-101857695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 157
               

               
Conread position:
               
6-700
               

               
Cow position:
               
chr1:98661644-98660933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 200
               

               
Conread position:
               
7-187
               

               
Cow position:
               
chr1:37420325-37420135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 146
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr1:52172825-52172589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
7-455
               

               
Cow position:
               
chr1:28801780-28801295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 424
               

               
Conread position:
               
7-611
               

               
Cow position:
               
chr1:89900055-89899413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 158
               

               
Conread position:
               
7-613
               

               
Cow position:
               
chr1:38414458-38415091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 154
               

               
Conread position:
               
7-613
               

               
Cow position:
               
chr1:45097371-45097988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
7-613
               

               
Cow position:
               
chr1:62854181-62853551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 185
               

               
Conread position:
               
7-613
               

               
Cow position:
               
chr1:88635024-88635664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 187
               

               
Conread position:
               
7-631
               

               
Cow position:
               
chr1:67286156-67286799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 12
               

               
Conread position:
               
7-631
               

               
Cow position:
               
chr1:97123479-97124120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 158
               

               
Conread position:
               
7-667
               

               
Cow position:
               
chr1:69536549-69537245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 192
               

               
Conread position:
               
7-668
               

               
Cow position:
               
chr1:33711707-33712413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 410
               

               
Conread position:
               
7-687
               

               
Cow position:
               
chr1:34688998-34689711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
7-697
               

               
Cow position:
               
chr1:63501107-63501817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 217
               

               
Conread position:
               
7-710
               

               
Cow position:
               
chr1:102555738-102556431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
7-723
               

               
Cow position:
               
chr1:30027884-30027145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
8-616
               

               
Cow position:
               
chr1:87244446-87245107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 198
               

               
Conread position:
               
8-634
               

               
Cow position:
               
chr1:52918960-52918312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 141
               

               
Conread position:
               
8-667
               

               
Cow position:
               
chr1:1461681-1460984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 529
               

               
Conread position:
               
8-723
               

               
Cow position:
               
chr1:25887484-25886759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 133
               

               
Conread position:
               
9-613
               

               
Cow position:
               
chr1:18406550-18405904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 314
               

               
Conread position:
               
9-619
               

               
Cow position:
               
chr1:101149491-101150133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 183
               

               
Conread position:
               
9-627
               

               
Cow position:
               
chr1:22000309-21999649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 416
               

               
Conread position:
               
9-627
               

               
Cow position:
               
chr1:25180383-25179722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 415
               

               
Conread position:
               
9-627
               

               
Cow position:
               
chr1:56194283-56193623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 228
               

               
Conread position:
               
9-627
               

               
Cow position:
               
chr1:68607900-68607235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 419
               

               
Conread position:
               
9-627
               

               
Cow position:
               
chr1:69402643-69403288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 417
               

               
Conread position:
               
9-627
               

               
Cow position:
               
chr1:100597734-100597065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 540
               

               
Conread position:
               
9-646
               

               
Cow position:
               
chr1:82652292-82652982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 421
               

               
Conread position:
               
9-652
               

               
Cow position:
               
chr1:31366430-31365742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 428
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr1:76703717-76703363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 185
               

               
Conread position:
               
10-625
               

               
Cow position:
               
chr1:19993025-19992384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
40, 180
               

               
Conread position:
               
10-627
               

               
Cow position:
               
chr1:76753000-76752345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 181
               

               
Conread position:
               
13-427
               

               
Cow position:
               
chr1:17942160-17941715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 407
               

               
Conread position:
               
15-608
               

               
Cow position:
               
chr1:85791350-85791975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 147
               

               
Conread position:
               
15-613
               

               
Cow position:
               
chr1:17013082-17012445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 407
               

               
Conread position:
               
15-613
               

               
Cow position:
               
chr1:69766126-69766756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
15-613
               

               
Cow position:
               
chr1:72656637-72657280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 530
               

               
Conread position:
               
15-632
               

               
Cow position:
               
chr1:39543425-39544083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 409
               

               
Conread position:
               
15-651
               

               
Cow position:
               
chr1:13449845-13450540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 423
               

               
Conread position:
               
15-651
               

               
Cow position:
               
chr1:17036897-17036223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 399
               

               
Conread position:
               
29-528
               

               
Cow position:
               
chr1:33387963-33388485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 348
               

               
Conread position:
               
32-613
               

               
Cow position:
               
chr1:13645393-13646005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 248
               

               
Conread position:
               
32-613
               

               
Cow position:
               
chr1:18244713-18244091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
39-607
               

               
Cow position:
               
chr1:89740556-89739982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
41-474
               

               
Cow position:
               
chr1:29950617-29950176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
41-627
               

               
Cow position:
               
chr1:72980957-72981575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 373
               

               
Conread position:
               
41-633
               

               
Cow position:
               
chr1:58335519-58336149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 380
               

               
Conread position:
               
45-363
               

               
Cow position:
               
chr1:5501663-5501997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
45-430
               

               
Cow position:
               
chr1:62806113-62805707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 379
               

               
Conread position:
               
45-443
               

               
Cow position:
               
chr1:69922775-69922354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 370
               

               
Conread position:
               
45-522
               

               
Cow position:
               
chr1:25549751-25550249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 368
               

               
Conread position:
               
45-607
               

               
Cow position:
               
chr1:72187183-72186590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 373
               

               
Conread position:
               
45-609
               

               
Cow position:
               
chr1:33550611-33551207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 241
               

               
Conread position:
               
45-611
               

               
Cow position:
               
chr1:55276791-55276193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 365
               

               
Conread position:
               
45-612
               

               
Cow position:
               
chr1:63606095-63605489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 376
               

               
Conread position:
               
45-613
               

               
Cow position:
               
chr1:57656248-57656837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 141
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:3386318-3385712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 374
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:56144642-56144030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 179
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:57367444-57366824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 215
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:57567638-57568260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 375
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:76623257-76622649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:79336116-79335496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 374
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:79457279-79456664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 371
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:88130446-88131079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 387
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chr1:102435340-102434731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 283
               

               
Conread position:
               
45-633
               

               
Cow position:
               
chr1:91718949-91718324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 271
               

               
Conread position:
               
45-650
               

               
Cow position:
               
chr1:42736145-42736779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 266
               

               
Conread position:
               
45-666
               

               
Cow position:
               
chr1:61738797-61738173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
45-686
               

               
Cow position:
               
chr1:49974500-49973826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 372
               

               
Conread position:
               
46-488
               

               
Cow position:
               
chr1:28276335-28276796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
42, 147
               

               
Conread position:
               
46-597
               

               
Cow position:
               
chr1:55775843-55776414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 201
               

               
Conread position:
               
46-613
               

               
Cow position:
               
chr1:85781091-85780487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 373
               

               
Conread position:
               
46-626
               

               
Cow position:
               
chr1:28872766-28873381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 370
               

               
Conread position:
               
46-644
               

               
Cow position:
               
chr1:93854208-93854846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 384
               

               
Conread position:
               
46-650
               

               
Cow position:
               
chr1:76545851-76545211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 156
               

               
Conread position:
               
46-687
               

               
Cow position:
               
chr1:8824751-8825415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 156
               

               
Conread position:
               
47-265
               

               
Cow position:
               
chr1:67902726-67902502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 147
               

               
Conread position:
               
47-351
               

               
Cow position:
               
chr1:13253741-13253428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
47-408
               

               
Cow position:
               
chr1:40513799-40513426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
47-506
               

               
Cow position:
               
chr1:79921037-79920550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 364
               

               
Conread position:
               
47-523
               

               
Cow position:
               
chr1:86608896-86609381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 141
               

               
Conread position:
               
47-570
               

               
Cow position:
               
chr1:84149113-84149658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
47-573
               

               
Cow position:
               
chr1:33895368-33895923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 365
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chr1:18880695-18880099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chr1:40053049-40053649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 366
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chr1:40307761-40308351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 148
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chr1:71562877-71562280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chr1:82918959-82918371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 53
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chr1:86548432-86547841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
47-616
               

               
Cow position:
               
chr1:79637241-79636638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 142
               

               
Conread position:
               
47-627
               

               
Cow position:
               
chr1:86699528-86698909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 385
               

               
Conread position:
               
47-632
               

               
Cow position:
               
chr1:56163021-56163640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 377
               

               
Conread position:
               
47-648
               

               
Cow position:
               
chr1:52233409-52232786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
47-651
               

               
Cow position:
               
chr1:8554018-8554662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 364
               

               
Conread position:
               
47-651
               

               
Cow position:
               
chr1:11292414-11291772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 365
               

               
Conread position:
               
47-651
               

               
Cow position:
               
chr1:59210444-59209805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 183
               

               
Conread position:
               
47-651
               

               
Cow position:
               
chr1:82564195-82564837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 229
               

               
Conread position:
               
47-651
               

               
Cow position:
               
chr1:89425280-89425907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 183
               

               
Conread position:
               
47-686
               

               
Cow position:
               
chr1:61308700-61309370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 360
               

               
Conread position:
               
47-703
               

               
Cow position:
               
chr1:5318458-5319127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
47-710
               

               
Cow position:
               
chr1:54366120-54365439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
50-613
               

               
Cow position:
               
chr1:20828590-20829183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
50-613
               

               
Cow position:
               
chr1:40684992-40684397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 372
               

               
Conread position:
               
50-613
               

               
Cow position:
               
chr1:56489540-56490134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 371
               

               
Conread position:
               
50-613
               

               
Cow position:
               
chr1:91898700-91899290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 174
               

               
Conread position:
               
50-617
               

               
Cow position:
               
chr1:67835438-67834841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 345
               

               
Conread position:
               
51-314
               

               
Cow position:
               
chr1:31396117-31396386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
50, 144
               

               
Conread position:
               
53-651
               

               
Cow position:
               
chr1:80359469-80358847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 148
               

               
Conread position:
               
53-702
               

               
Cow position:
               
chr1:38385578-38384917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
56-728
               

               
Cow position:
               
chr1:31331085-31330381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 139
               

               
Conread position:
               
57-723
               

               
Cow position:
               
chr1:13879837-13880521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 357
               

               
Conread position:
               
62-716
               

               
Cow position:
               
chr1:38387921-38387310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
75-409
               

               
Cow position:
               
chr1:6708365-6708018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
75-651
               

               
Cow position:
               
chr1:62925339-62925947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
86-654
               

               
Cow position:
               
chr1:80556313-80555746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
90-490
               

               
Cow position:
               
chr1:77163523-77163924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
90-627
               

               
Cow position:
               
chr1:62244905-62244339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
90-627
               

               
Cow position:
               
chr1:87207671-87207120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 101
               

               
Conread position:
               
90-710
               

               
Cow position:
               
chr1:59933298-59933919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
93-667
               

               
Cow position:
               
chr1:102548978-102549583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
94-689
               

               
Cow position:
               
chr1:97226955-97226344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 182
               

               
Conread position:
               
95-613
               

               
Cow position:
               
chr1:33851025-33851571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 210
               

               
Conread position:
               
95-632
               

               
Cow position:
               
chr1:89770936-89770368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
96-613
               

               
Cow position:
               
chr1:42290139-42290676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 428
               

               
Conread position:
               
97-613
               

               
Cow position:
               
chr1:30283788-30283249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 110
               

               
Conread position:
               
97-613
               

               
Cow position:
               
chr1:99349270-99348744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 188
               

               
Conread position:
               
105-344
               

               
Cow position:
               
chr1:22864162-22863915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
105-351
               

               
Cow position:
               
chr1:21541317-21541567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
105-362
               

               
Cow position:
               
chr1:89809864-89809602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 244
               

               
Conread position:
               
105-532
               

               
Cow position:
               
chr1:98783810-98784251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 162
               

               
Conread position:
               
105-634
               

               
Cow position:
               
chr1:53046025-53045472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 284
               

               
Conread position:
               
108-621
               

               
Cow position:
               
chr1:99374732-99375255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
70, 220
               

               
Conread position:
               
110-472
               

               
Cow position:
               
chr1:82407579-82407205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 70
               

               
Conread position:
               
123-722
               

               
Cow position:
               
chr1:72136417-72137041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 271
               

               
Conread position:
               
125-385
               

               
Cow position:
               
chr1:32361337-32361078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
154, 66
               

               
Conread position:
               
126-651
               

               
Cow position:
               
chr1:56722932-56723488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
129-651
               

               
Cow position:
               
chr1:21087197-21087747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
134-626
               

               
Cow position:
               
chr1:52359491-52358970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 278
               

               
Conread position:
               
135-613
               

               
Cow position:
               
chr1:72080558-72081072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 277
               

               
Conread position:
               
136-698
               

               
Cow position:
               
chr1:77112651-77112069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
142-654
               

               
Cow position:
               
chr1:82355521-82356053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 198
               

               
Conread position:
               
142-700
               

               
Cow position:
               
chr1:79109090-79109649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
146-627
               

               
Cow position:
               
chr1:91893314-91892815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
153-627
               

               
Cow position:
               
chr1:78289685-78290172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 205
               

               
Conread position:
               
156-610
               

               
Cow position:
               
chr1:28710723-28711207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 253
               

               
Conread position:
               
164-699
               

               
Cow position:
               
chr1:73009615-73010158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 236
               

               
Conread position:
               
172-454
               

               
Cow position:
               
chr1:15347761-15347462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
25, 230
               

               
Conread position:
               
179-528
               

               
Cow position:
               
chr1:44101912-44101550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 223
               

               
Conread position:
               
179-667
               

               
Cow position:
               
chr1:37419914-37419425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 52
               

               
Conread position:
               
179-707
               

               
Cow position:
               
chr1:11863402-11862876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
100, 15
               

               
Conread position:
               
180-561
               

               
Cow position:
               
chr1:23050672-23051063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 139
               

               
Conread position:
               
181-604
               

               
Cow position:
               
chr1:99910784-99911243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 173
               

               
Conread position:
               
182-630
               

               
Cow position:
               
chr1:59644689-59645148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 217
               

               
Conread position:
               
184-569
               

               
Cow position:
               
chr1:39482145-39481744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 342
               

               
Conread position:
               
205-604
               

               
Cow position:
               
chr1:48245670-48246098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 204
               

               
Conread position:
               
205-630
               

               
Cow position:
               
chr1:12062338-12061888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 204
               

               
Conread position:
               
250-613
               

               
Cow position:
               
chr1:60339210-60339599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 155
               

               
Conread position:
               
251-700
               

               
Cow position:
               
chr1:32342169-32341696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
253-651
               

               
Cow position:
               
chr1:29362204-29362630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 152
               

               
Conread position:
               
255-561
               

               
Cow position:
               
chr1:77117681-77117356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
27, 143
               

               
Conread position:
               
257-569
               

               
Cow position:
               
chr1:20988864-20989194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
264-723
               

               
Cow position:
               
chr1:67901999-67901512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
271-690
               

               
Cow position:
               
chr1:69060452-69060868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
273-700
               

               
Cow position:
               
chr1:46835457-46835903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
277-710
               

               
Cow position:
               
chr1:89479257-89479703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
278-627
               

               
Cow position:
               
chr1:58884131-58883759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
280-627
               

               
Cow position:
               
chr1:73071118-73070748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 124
               

               
Conread position:
               
282-632
               

               
Cow position:
               
chr1:40574156-40574527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
64, 119
               

               
Conread position:
               
292-627
               

               
Cow position:
               
chr1:94659643-94659990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
294-613
               

               
Cow position:
               
chr1:28722825-28723167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
61, 110
               

               
Conread position:
               
305-613
               

               
Cow position:
               
chr1:31396666-31396984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
311-635
               

               
Cow position:
               
chr1:82924198-82923862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
329-629
               

               
Cow position:
               
chr1:77655695-77656005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 184
               

               
Conread position:
               
345-613
               

               
Cow position:
               
chr1:85882017-85882295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 58
               

               
Conread position:
               
345-705
               

               
Cow position:
               
chr1:55157558-55157197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
353-725
               

               
Cow position:
               
chr1:55323035-55322650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 36
               

               
Conread position:
               
355-613
               

               
Cow position:
               
chr1:82913120-82912850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
370-610
               

               
Cow position:
               
chr1:95239409-95239660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
372-627
               

               
Cow position:
               
chr1:5501976-5502242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
397-604
               

               
Cow position:
               
chr1:40953967-40954186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
446-722
               

               
Cow position:
               
chr1:40513264-40512977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
453-721
               

               
Cow position:
               
chr1:94253041-94253320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 57
               

               
Conread position:
               
461-686
               

               
Cow position:
               
chr1:69922307-69922073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
464-724
               

               
Cow position:
               
chr1:24650896-24651164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
569-710
               

               
Cow position:
               
chr1:58179894-58179752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
570-702
               

               
Cow position:
               
chr1:45021947-45021813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               
Show alignments to all cow chromosomes.