Cow genome map

Conread name: Ova1-OVRM10196B05

Conread position: 1-569
Cow position: chr16:36232698-36232119 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 72

Conread position: 1-650
Cow position: chr16:15183705-15184388 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 205

Conread position: 7-316
Cow position: chr16:32935059-32935365 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 59

Conread position: 7-356
Cow position: chr16:23670679-23670322 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 43

Conread position: 7-356
Cow position: chr16:29982180-29982555 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 266
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 42, 122

Conread position: 7-450
Cow position: chr16:29676400-29675934 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 336

Conread position: 7-455
Cow position: chr16:18688213-18687744 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 90

Conread position: 7-474
Cow position: chr16:54647239-54647719 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 82

Conread position: 7-481
Cow position: chr16:5888407-5888875 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 50

Conread position: 7-569
Cow position: chr16:42051435-42050891 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 59

Conread position: 7-626
Cow position: chr16:11052078-11052726 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 184

Conread position: 7-631
Cow position: chr16:25084529-25085191 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 412

Conread position: 7-635
Cow position: chr16:36282301-36282970 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 420

Conread position: 7-638
Cow position: chr16:6549616-6548947 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 140

Conread position: 7-689
Cow position: chr16:7905548-7906245 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 173

Conread position: 7-699
Cow position: chr16:47562601-47563337 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 192

Conread position: 7-700
Cow position: chr16:55111938-55111217 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 7-708
Cow position: chr16:31376322-31375633 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 159

Conread position: 7-722
Cow position: chr16:25157311-25156557 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 25

Conread position: 7-722
Cow position: chr16:42740512-42739762 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 410

Conread position: 7-723
Cow position: chr16:9929461-9930198 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 9-627
Cow position: chr16:8817198-8816538 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 219

Conread position: 9-686
Cow position: chr16:15491620-15492331 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 30

Conread position: 9-722
Cow position: chr16:49236203-49235487 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 310

Conread position: 10-627
Cow position: chr16:1568539-1567888 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 15-652
Cow position: chr16:31672-32330 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 90

Conread position: 19-260
Cow position: chr16:27004296-27004541 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 93

Conread position: 25-438
Cow position: chr16:25152709-25153127 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 46

Conread position: 32-540
Cow position: chr16:40887331-40886793 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 114

Conread position: 35-627
Cow position: chr16:23253567-23252941 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 97

Conread position: 41-569
Cow position: chr16:51685391-51685933 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 92

Conread position: 41-613
Cow position: chr16:5660811-5661401 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 7

Conread position: 43-454
Cow position: chr16:1430172-1430604 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 234

Conread position: 45-280
Cow position: chr16:9777078-9777325 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 45-387
Cow position: chr16:24881740-24881377 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 191

Conread position: 45-614
Cow position: chr16:27734858-27734250 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 375

Conread position: 45-627
Cow position: chr16:2728366-2727722 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 385

Conread position: 45-627
Cow position: chr16:10204468-10203864 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 250

Conread position: 45-627
Cow position: chr16:10437204-10437807 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 157

Conread position: 45-627
Cow position: chr16:12538978-12538359 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 375

Conread position: 45-627
Cow position: chr16:25340918-25341531 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 159

Conread position: 45-627
Cow position: chr16:25440561-25441190 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 375

Conread position: 45-627
Cow position: chr16:25458528-25457899 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 375

Conread position: 45-627
Cow position: chr16:28472149-28471536 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 235

Conread position: 45-627
Cow position: chr16:29045978-29046588 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 35

Conread position: 45-638
Cow position: chr16:23982258-23982887 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 373

Conread position: 45-686
Cow position: chr16:15565697-15566364 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 267

Conread position: 46-607
Cow position: chr16:40297227-40296633 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 113

Conread position: 46-627
Cow position: chr16:26662701-26663315 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 153

Conread position: 47-272
Cow position: chr16:29031865-29032100 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 51, 211

Conread position: 47-362
Cow position: chr16:16687816-16688146 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 26

Conread position: 47-613
Cow position: chr16:2239781-2239189 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 96

Conread position: 47-613
Cow position: chr16:2484188-2483591 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 47-613
Cow position: chr16:5918434-5919034 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 363

Conread position: 47-613
Cow position: chr16:19713899-19713338 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 220

Conread position: 47-613
Cow position: chr16:20255358-20254760 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 484

Conread position: 47-614
Cow position: chr16:28171411-28170811 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 218

Conread position: 47-627
Cow position: chr16:408083-407465 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 266

Conread position: 47-633
Cow position: chr16:31592957-31592334 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 373

Conread position: 47-651
Cow position: chr16:6942571-6943223 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 364

Conread position: 51-476
Cow position: chr16:32605780-32606233 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 360

Conread position: 76-518
Cow position: chr16:4303484-4303032 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 324

Conread position: 90-352
Cow position: chr16:44965058-44965321 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 70

Conread position: 95-627
Cow position: chr16:43898264-43897705 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 319

Conread position: 95-648
Cow position: chr16:2411965-2411382 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 316

Conread position: 95-667
Cow position: chr16:41559681-41560258 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 70

Conread position: 95-722
Cow position: chr16:49257559-49256920 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 47

Conread position: 115-631
Cow position: chr16:10808191-10808720 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 75

Conread position: 116-613
Cow position: chr16:36362322-36361811 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 74

Conread position: 123-511
Cow position: chr16:16276472-16276068 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 209

Conread position: 126-610
Cow position: chr16:25187677-25188190 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 283

Conread position: 126-635
Cow position: chr16:836073-836604 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 16

Conread position: 130-613
Cow position: chr16:56551168-56551671 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 175

Conread position: 144-314
Cow position: chr16:56320891-56321069 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 153-691
Cow position: chr16:39820701-39821270 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 43

Conread position: 178-518
Cow position: chr16:26650523-26650873 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 50

Conread position: 179-689
Cow position: chr16:34529415-34529946 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 235

Conread position: 181-627
Cow position: chr16:5483416-5483889 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 14

Conread position: 184-725
Cow position: chr16:335396-335950 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 19

Conread position: 185-488
Cow position: chr16:44388482-44388164 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 27

Conread position: 205-627
Cow position: chr16:14666713-14666263 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 204

Conread position: 214-383
Cow position: chr16:4441999-4442179 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 276-723
Cow position: chr16:32935352-32935833 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 112

Conread position: 296-710
Cow position: chr16:44966391-44966808 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 290
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 20, 36

Conread position: 306-613
Cow position: chr16:9777318-9777636 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 85

Conread position: 379-610
Cow position: chr16:53045655-53045902 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 17, 137

Conread position: 412-690
Cow position: chr16:18500009-18499722 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 27

Conread position: 437-710
Cow position: chr16:52815124-52814840 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 75

Conread position: 455-725
Cow position: chr16:29033100-29033381 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 79, 34

Conread position: 514-722
Cow position: chr16:16273393-16273172 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 519-722
Cow position: chr16:25257050-25257265 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 52, 154

Conread position: 568-725
Cow position: chr16:23807474-23807634 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 32

Conread position: 570-731
Cow position: chr16:5652273-5652438 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 19

Conread position: 573-722
Cow position: chr16:5889430-5889579 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 84

Show alignments to all cow chromosomes.