Cow genome map
| Conread name: | Ova1-OVRM10196B05 |
| Conread position: | 5-627 |
| Cow position: | chr17:25737143-25737807 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 418 |
| Conread position: | 7-425 |
| Cow position: | chr17:28109577-28110015 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 7-562 |
| Cow position: | chr17:39933169-39933722 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 194 |
| Conread position: | 7-613 |
| Cow position: | chr17:16889612-16890253 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 7-613 |
| Cow position: | chr17:35591706-35592343 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 7-627 |
| Cow position: | chr17:27345289-27345942 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 147 |
| Conread position: | 7-630 |
| Cow position: | chr17:2286858-2287533 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 320 |
| Conread position: | 7-721 |
| Cow position: | chr17:6002532-6001782 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 167 |
| Conread position: | 7-722 |
| Cow position: | chr17:15370562-15371288 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 7-723 |
| Cow position: | chr17:20401157-20401899 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 8-723 |
| Cow position: | chr17:4081134-4081877 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 238 |
| Conread position: | 9-613 |
| Cow position: | chr17:2249098-2248455 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 412 |
| Conread position: | 9-613 |
| Cow position: | chr17:4059590-4060228 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 237 |
| Conread position: | 9-613 |
| Cow position: | chr17:44853440-44852804 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 9-627 |
| Cow position: | chr17:14893641-14894297 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 147 |
| Conread position: | 15-569 |
| Cow position: | chr17:2261606-2262180 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 295 |
| Conread position: | 15-574 |
| Cow position: | chr17:24780537-24781127 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 418 |
| Conread position: | 15-609 |
| Cow position: | chr17:15435284-15435916 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 402 |
| Conread position: | 15-613 |
| Cow position: | chr17:8208600-8209235 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 190 |
| Conread position: | 15-632 |
| Cow position: | chr17:15157463-15156815 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 176 |
| Conread position: | 20-632 |
| Cow position: | chr17:15143866-15143218 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 169 |
| Conread position: | 25-207 |
| Cow position: | chr17:12670832-12670646 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 173 |
| Conread position: | 31-532 |
| Cow position: | chr17:14308796-14308276 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 341 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 54, 299 |
| Conread position: | 32-651 |
| Cow position: | chr17:6089650-6088992 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 38-481 |
| Cow position: | chr17:16429039-16428588 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 40-336 |
| Cow position: | chr17:2737895-2738208 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 41-627 |
| Cow position: | chr17:3643317-3642692 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 379 |
| Conread position: | 41-635 |
| Cow position: | chr17:228775-228156 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 9 |
| Conread position: | 44-629 |
| Cow position: | chr17:13857250-13856625 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 5 |
| Conread position: | 45-371 |
| Cow position: | chr17:40803929-40804268 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 219 |
| Conread position: | 45-393 |
| Cow position: | chr17:2579085-2579447 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 45-627 |
| Cow position: | chr17:2173405-2174022 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 410 |
| Conread position: | 45-627 |
| Cow position: | chr17:13929197-13929812 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 363 |
| Conread position: | 45-627 |
| Cow position: | chr17:19269841-19269222 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 151 |
| Conread position: | 46-473 |
| Cow position: | chr17:15322355-15322788 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 46-627 |
| Cow position: | chr17:11088196-11087580 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 155 |
| Conread position: | 46-627 |
| Cow position: | chr17:18104156-18103541 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 386 |
| Conread position: | 46-721 |
| Cow position: | chr17:4294908-4295581 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 135 |
| Conread position: | 46-725 |
| Cow position: | chr17:14325969-14325270 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 363 |
| Conread position: | 47-518 |
| Cow position: | chr17:22160441-22160939 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 364 |
| Conread position: | 47-568 |
| Cow position: | chr17:249454-250012 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 47-610 |
| Cow position: | chr17:24633482-24634080 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 195 |
| Conread position: | 47-613 |
| Cow position: | chr17:1383286-1382685 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 155 |
| Conread position: | 47-615 |
| Cow position: | chr17:14217499-14216892 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 370 |
| Conread position: | 47-629 |
| Cow position: | chr17:9653924-9653312 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 141 |
| Conread position: | 49-656 |
| Cow position: | chr17:152929-152301 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 94 |
| Conread position: | 51-644 |
| Cow position: | chr17:15849930-15850558 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 53-569 |
| Cow position: | chr17:22429950-22429420 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 365 |
| Conread position: | 53-628 |
| Cow position: | chr17:1879623-1880238 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 170 |
| Conread position: | 70-721 |
| Cow position: | chr17:42264082-42264738 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 111 |
| Conread position: | 89-668 |
| Cow position: | chr17:23857455-23856850 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 15 |
| Conread position: | 90-604 |
| Cow position: | chr17:16859980-16859448 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 322 |
| Conread position: | 90-607 |
| Cow position: | chr17:2587912-2588426 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 133 |
| Conread position: | 95-651 |
| Cow position: | chr17:20666145-20665557 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 314 |
| Conread position: | 96-613 |
| Cow position: | chr17:43988120-43988662 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 388 |
| Conread position: | 100-613 |
| Cow position: | chr17:20183640-20183105 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 105-632 |
| Cow position: | chr17:23324850-23324305 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 143 |
| Conread position: | 119-632 |
| Cow position: | chr17:18185919-18185385 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 208 |
| Conread position: | 122-613 |
| Cow position: | chr17:1946584-1947098 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 370 |
| Conread position: | 125-421 |
| Cow position: | chr17:3710448-3710148 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 112, 82 |
| Conread position: | 148-456 |
| Cow position: | chr17:18302000-18301710 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 31 |
| Conread position: | 179-627 |
| Cow position: | chr17:6259514-6259988 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 183-632 |
| Cow position: | chr17:20088057-20087598 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 184-616 |
| Cow position: | chr17:22131908-22132360 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 8 |
| Conread position: | 244-601 |
| Cow position: | chr17:2555857-2556239 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 161 |
| Conread position: | 248-689 |
| Cow position: | chr17:18027019-18026551 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 277 |
| Conread position: | 281-537 |
| Cow position: | chr17:12670672-12670412 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 80, 121 |
| Conread position: | 302-665 |
| Cow position: | chr17:2579432-2579791 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 353-669 |
| Cow position: | chr17:31199786-31199476 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 376-648 |
| Cow position: | chr17:40804693-40804981 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 20, 137 |
| Conread position: | 394-610 |
| Cow position: | chr17:181260-181489 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 398-635 |
| Cow position: | chr17:602523-602287 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 163 |
| Conread position: | 415-569 |
| Cow position: | chr17:26205888-26205733 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 431-693 |
| Cow position: | chr17:1283768-1283497 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 9 |
Show alignments to all cow chromosomes.