Cow genome map
| Conread name: | Ova1-OVRM10196B05 |
| Conread position: | 1-699 |
| Cow position: | chr21:444905-445584 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 5-613 |
| Cow position: | chr21:4076614-4077254 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 188 |
| Conread position: | 7-454 |
| Cow position: | chr21:2716900-2716436 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 7-482 |
| Cow position: | chr21:34259443-34258954 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 185 |
| Conread position: | 7-501 |
| Cow position: | chr21:2769684-2769166 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 98 |
| Conread position: | 7-569 |
| Cow position: | chr21:47939248-47939833 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 338 |
| Conread position: | 7-570 |
| Cow position: | chr21:4222926-4222330 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 7-613 |
| Cow position: | chr21:2530357-2529711 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 257 |
| Conread position: | 7-613 |
| Cow position: | chr21:20744967-20744352 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 7-627 |
| Cow position: | chr21:34292788-34293447 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 159 |
| Conread position: | 7-645 |
| Cow position: | chr21:2416017-2416671 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 123 |
| Conread position: | 7-687 |
| Cow position: | chr21:23860552-23861271 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 339 |
| Conread position: | 8-667 |
| Cow position: | chr21:1292402-1291719 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 184 |
| Conread position: | 9-627 |
| Cow position: | chr21:3778539-3779198 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 219 |
| Conread position: | 9-627 |
| Cow position: | chr21:48115879-48116533 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 157 |
| Conread position: | 13-407 |
| Cow position: | chr21:21516985-21517387 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 310 |
| Conread position: | 13-613 |
| Cow position: | chr21:7267757-7267120 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 13-613 |
| Cow position: | chr21:13124221-13123589 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 15-651 |
| Cow position: | chr21:11505364-11506053 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 406 |
| Conread position: | 29-697 |
| Cow position: | chr21:6699770-6699093 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 442 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 254 |
| Conread position: | 32-540 |
| Cow position: | chr21:33755088-33755634 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 32-698 |
| Cow position: | chr21:36714434-36715131 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 42-678 |
| Cow position: | chr21:2510464-2511144 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 44-613 |
| Cow position: | chr21:12056187-12055584 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 158 |
| Conread position: | 45-471 |
| Cow position: | chr21:33251203-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 384 |
| Conread position: | 45-613 |
| Cow position: | chr21:26638645-26638048 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 366 |
| Conread position: | 45-627 |
| Cow position: | chr21:145731-146354 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 373 |
| Conread position: | 45-627 |
| Cow position: | chr21:10566490-10567100 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 45-627 |
| Cow position: | chr21:30561613-30562234 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 375 |
| Conread position: | 45-638 |
| Cow position: | chr21:31559836-31559213 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 45-650 |
| Cow position: | chr21:10849891-10850528 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 372 |
| Conread position: | 45-686 |
| Cow position: | chr21:2883923-2883260 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 143 |
| Conread position: | 45-722 |
| Cow position: | chr21:23811721-23812401 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 56 |
| Conread position: | 46-303 |
| Cow position: | chr21:28529730-28529459 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 46-351 |
| Cow position: | chr21:1190854-1191181 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-689 |
| Cow position: | chr21:9891425-9892097 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 47-408 |
| Cow position: | chr21:27708575-27708962 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 45, 365 |
| Conread position: | 47-444 |
| Cow position: | chr21:26819200-26818785 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 140 |
| Conread position: | 47-449 |
| Cow position: | chr21:3615107-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 47-569 |
| Cow position: | chr21:47947929-47948470 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 375 |
| Conread position: | 47-610 |
| Cow position: | chr21:37044732-37045324 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 47-613 |
| Cow position: | chr21:2674824-2674195 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 245 |
| Conread position: | 47-613 |
| Cow position: | chr21:2789168-2788576 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 47-613 |
| Cow position: | chr21:35596194-35596783 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 54 |
| Conread position: | 47-613 |
| Cow position: | chr21:39424883-39425480 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 350 |
| Conread position: | 47-613 |
| Cow position: | chr21:46915405-46916005 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 142 |
| Conread position: | 47-627 |
| Cow position: | chr21:30600101-30599494 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 52-569 |
| Cow position: | chr21:3426302-3426847 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 56-729 |
| Cow position: | chr21:4183365-4184047 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 127 |
| Conread position: | 75-336 |
| Cow position: | chr21:17572773-17573039 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 75-610 |
| Cow position: | chr21:11453804-11453242 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 75-613 |
| Cow position: | chr21:2476661-2476124 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 90-613 |
| Cow position: | chr21:4090515-4091066 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 311 |
| Conread position: | 90-722 |
| Cow position: | chr21:2541551-2540885 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 254 |
| Conread position: | 95-524 |
| Cow position: | chr21:25992751-25992317 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 95-530 |
| Cow position: | chr21:21947932-21947481 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 302 |
| Conread position: | 125-613 |
| Cow position: | chr21:4456729-4457243 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 156-697 |
| Cow position: | chr21:26823297-26822731 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 380 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 184-645 |
| Cow position: | chr21:4590028-4589545 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 210-689 |
| Cow position: | chr21:27282374-27282877 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 279 |
| Conread position: | 215-632 |
| Cow position: | chr21:6339558-6340003 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 185 |
| Conread position: | 215-708 |
| Cow position: | chr21:8678368-8677858 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 185 |
| Conread position: | 276-612 |
| Cow position: | chr21:40271619-40271261 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 278-551 |
| Cow position: | chr21:34054681-34054391 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 69, 111 |
| Conread position: | 303-667 |
| Cow position: | chr21:3798286-3797899 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 219 |
| Conread position: | 319-611 |
| Cow position: | chr21:18820315-18820015 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 66 |
| Conread position: | 321-725 |
| Cow position: | chr21:28923-29300 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 330-627 |
| Cow position: | chr21:1191291-1191595 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 126, 11 |
| Conread position: | 394-651 |
| Cow position: | chr21:26650226-26650498 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 408-627 |
| Cow position: | chr21:35143968-35144188 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 54, 104 |
| Conread position: | 412-613 |
| Cow position: | chr21:3615524-3615728 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 446-722 |
| Cow position: | chr21:30226257-30226541 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 458-708 |
| Cow position: | chr21:9870003-9870255 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 461-722 |
| Cow position: | chr21:359289-359560 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 110, 42 |
Show alignments to all cow chromosomes.