Cow genome map
| Conread name: | Ova1-OVRM10196B05 |
| Conread position: | 7-408 |
| Cow position: | chr28:32331757-32331336 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 229 |
| Conread position: | 7-450 |
| Cow position: | chr28:34324469-34324926 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 228 |
| Conread position: | 7-569 |
| Cow position: | chr28:18102263-18101710 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 372 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 7-569 |
| Cow position: | chr28:22827705-22828247 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 7-613 |
| Cow position: | chr28:2591564-2592203 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 7-613 |
| Cow position: | chr28:9155638-9154997 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 7-632 |
| Cow position: | chr28:1387749-1387091 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 133 |
| Conread position: | 7-632 |
| Cow position: | chr28:9953776-9954442 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 276 |
| Conread position: | 7-722 |
| Cow position: | chr28:21325435-21326179 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 7-722 |
| Cow position: | chr28:21358662-21359401 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 184 |
| Conread position: | 8-225 |
| Cow position: | chr28:26007673-26007903 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 171 |
| Conread position: | 8-400 |
| Cow position: | chr28:15681535-15681942 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 188 |
| Conread position: | 9-371 |
| Cow position: | chr28:29819213-29819603 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 9-627 |
| Cow position: | chr28:2083247-2083899 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 406 |
| Conread position: | 9-627 |
| Cow position: | chr28:12149965-12150607 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 183 |
| Conread position: | 9-632 |
| Cow position: | chr28:22261508-22260842 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 424 |
| Conread position: | 9-722 |
| Cow position: | chr28:10619453-10618725 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 178 |
| Conread position: | 11-613 |
| Cow position: | chr28:8721799-8721161 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 195 |
| Conread position: | 11-702 |
| Cow position: | chr28:34648585-34649323 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 28 |
| Conread position: | 15-303 |
| Cow position: | chr28:18089353-18089051 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 15-613 |
| Cow position: | chr28:1952791-1953418 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 31-613 |
| Cow position: | chr28:24587110-24587723 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 35-491 |
| Cow position: | chr28:26426600-26426121 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 145 |
| Conread position: | 39-504 |
| Cow position: | chr28:7816910-7817373 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 44-613 |
| Cow position: | chr28:6780645-6780045 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 366 |
| Conread position: | 45-339 |
| Cow position: | chr28:1168481-1168174 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 45-339 |
| Cow position: | chr28:34593526-34593832 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 53, 242 |
| Conread position: | 45-613 |
| Cow position: | chr28:33252027-33252600 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 56 |
| Conread position: | 45-627 |
| Cow position: | chr28:3193092-3192488 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 39 |
| Conread position: | 45-627 |
| Cow position: | chr28:7001671-7002293 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 375 |
| Conread position: | 45-627 |
| Cow position: | chr28:14705988-14705368 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 383 |
| Conread position: | 45-627 |
| Cow position: | chr28:17388164-17388785 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 384 |
| Conread position: | 45-627 |
| Cow position: | chr28:32792696-32792077 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 386 |
| Conread position: | 45-722 |
| Cow position: | chr28:5812391-5813084 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 326 |
| Conread position: | 46-323 |
| Cow position: | chr28:13522411-13522701 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 36, 266 |
| Conread position: | 46-604 |
| Cow position: | chr28:5565545-5566133 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 375 |
| Conread position: | 46-627 |
| Cow position: | chr28:782082-782698 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 184 |
| Conread position: | 46-627 |
| Cow position: | chr28:1815183-1814564 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 373 |
| Conread position: | 46-627 |
| Cow position: | chr28:8378250-8378872 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 157 |
| Conread position: | 46-627 |
| Cow position: | chr28:13459658-13460273 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 369 |
| Conread position: | 47-295 |
| Cow position: | chr28:5796511-5796764 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 136 |
| Conread position: | 47-491 |
| Cow position: | chr28:15950666-15951136 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 362 |
| Conread position: | 47-569 |
| Cow position: | chr28:15920774-15920231 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 375 |
| Conread position: | 47-613 |
| Cow position: | chr28:7901044-7901650 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 485 |
| Conread position: | 47-613 |
| Cow position: | chr28:13441192-13440588 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 370 |
| Conread position: | 47-628 |
| Cow position: | chr28:10582300-10581681 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 372 |
| Conread position: | 47-632 |
| Cow position: | chr28:14750233-14750855 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 369 |
| Conread position: | 47-651 |
| Cow position: | chr28:7821950-7822586 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 54 |
| Conread position: | 63-613 |
| Cow position: | chr28:4381108-4380556 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 64-346 |
| Cow position: | chr28:2846771-2846510 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 172, 37 |
| Conread position: | 90-627 |
| Cow position: | chr28:18520725-18520156 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 313 |
| Conread position: | 95-624 |
| Cow position: | chr28:17667771-17667214 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 135 |
| Conread position: | 115-608 |
| Cow position: | chr28:1504616-1505135 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 174 |
| Conread position: | 125-454 |
| Cow position: | chr28:24652062-24652398 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 276 |
| Conread position: | 126-336 |
| Cow position: | chr28:5752105-5751886 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 126-627 |
| Cow position: | chr28:15378220-15377689 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 286 |
| Conread position: | 127-569 |
| Cow position: | chr28:2989909-2989483 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 139 |
| Conread position: | 148-613 |
| Cow position: | chr28:24667375-24667867 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 157 |
| Conread position: | 179-623 |
| Cow position: | chr28:5114971-5114512 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 179-627 |
| Cow position: | chr28:12410381-12409922 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 14 |
| Conread position: | 189-569 |
| Cow position: | chr28:12233140-12232768 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 189-702 |
| Cow position: | chr28:6657470-6656950 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 348 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 196-627 |
| Cow position: | chr28:7740340-7740784 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 232-613 |
| Cow position: | chr28:9137167-9136763 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 285 |
| Conread position: | 248-569 |
| Cow position: | chr28:2724993-2724657 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 157 |
| Conread position: | 301-654 |
| Cow position: | chr28:18181180-18180824 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 49 |
| Conread position: | 304-700 |
| Cow position: | chr28:17311911-17312302 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 308-727 |
| Cow position: | chr28:7790316-7789879 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 345-627 |
| Cow position: | chr28:1167873-1167578 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 49 |
| Conread position: | 345-627 |
| Cow position: | chr28:5751698-5751402 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 345-627 |
| Cow position: | chr28:34593987-34594282 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 350-627 |
| Cow position: | chr28:29819747-29820037 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 367-697 |
| Cow position: | chr28:2846142-2845805 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 372-613 |
| Cow position: | chr28:1931948-1931696 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 382-710 |
| Cow position: | chr28:5797475-5797821 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 412-723 |
| Cow position: | chr28:10463077-10462749 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 100 |
| Conread position: | 413-613 |
| Cow position: | chr28:485486-485274 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 99 |
| Conread position: | 441-722 |
| Cow position: | chr28:10071089-10071379 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 458-619 |
| Cow position: | chr28:13490274-13490446 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 522-720 |
| Cow position: | chr28:5764445-5764644 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 55 |
| Conread position: | 568-710 |
| Cow position: | chr28:7817382-7817527 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 568-718 |
| Cow position: | chr28:2989462-2989311 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 572-718 |
| Cow position: | chr28:11357466-11357320 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 42, 104 |
Show alignments to all cow chromosomes.