Cow genome map
| Conread name: | Ova1-OVRM10196B05 |
| Conread position: | 7-177 |
| Cow position: | chr29:34752079-34751904 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 7-613 |
| Cow position: | chr29:21543765-21543115 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 539 |
| Conread position: | 7-620 |
| Cow position: | chr29:14013079-14013726 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 309 |
| Conread position: | 7-633 |
| Cow position: | chr29:16769743-16770398 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 278 |
| Conread position: | 7-673 |
| Cow position: | chr29:35196294-35196979 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 98 |
| Conread position: | 7-689 |
| Cow position: | chr29:11048889-11049607 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 340 |
| Conread position: | 7-694 |
| Cow position: | chr29:30811158-30811859 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 127 |
| Conread position: | 7-710 |
| Cow position: | chr29:1714867-1715594 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 98 |
| Conread position: | 7-731 |
| Cow position: | chr29:104193-104933 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 168 |
| Conread position: | 7-732 |
| Cow position: | chr29:15950569-15949818 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 163 |
| Conread position: | 8-653 |
| Cow position: | chr29:9644113-9643461 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 196 |
| Conread position: | 9-473 |
| Cow position: | chr29:21246177-21246674 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 416 |
| Conread position: | 9-615 |
| Cow position: | chr29:5957212-5957860 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 531 |
| Conread position: | 9-627 |
| Cow position: | chr29:19652717-19653377 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 532 |
| Conread position: | 9-632 |
| Cow position: | chr29:39080097-39079437 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 402 |
| Conread position: | 9-686 |
| Cow position: | chr29:2099454-2100171 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 35-627 |
| Cow position: | chr29:34800167-34799538 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 39-666 |
| Cow position: | chr29:35296520-35297182 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 41-627 |
| Cow position: | chr29:26165176-26164553 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 41-632 |
| Cow position: | chr29:43322203-43322829 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 380 |
| Conread position: | 42-627 |
| Cow position: | chr29:2841719-2841104 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 152 |
| Conread position: | 42-632 |
| Cow position: | chr29:10648599-10647976 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 160 |
| Conread position: | 45-481 |
| Cow position: | chr29:28061009-28060552 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 45-627 |
| Cow position: | chr29:2689555-2690169 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 156 |
| Conread position: | 45-627 |
| Cow position: | chr29:6266843-6266232 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 317 |
| Conread position: | 45-627 |
| Cow position: | chr29:19623595-19622978 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 157 |
| Conread position: | 45-627 |
| Cow position: | chr29:25932895-25932275 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 374 |
| Conread position: | 45-629 |
| Cow position: | chr29:40503330-40502711 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 373 |
| Conread position: | 45-633 |
| Cow position: | chr29:45459368-45459991 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 157 |
| Conread position: | 45-667 |
| Cow position: | chr29:20250808-20251467 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 375 |
| Conread position: | 45-668 |
| Cow position: | chr29:32539460-32540118 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 383 |
| Conread position: | 46-627 |
| Cow position: | chr29:48826-48211 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 371 |
| Conread position: | 46-627 |
| Cow position: | chr29:16022194-16022799 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 46-627 |
| Cow position: | chr29:23975483-23976109 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 46-627 |
| Cow position: | chr29:38226645-38227249 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 47-336 |
| Cow position: | chr29:31121459-31121761 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 44, 103 |
| Conread position: | 47-525 |
| Cow position: | chr29:15969490-15968996 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 47-610 |
| Cow position: | chr29:15895197-15894599 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 155 |
| Conread position: | 47-613 |
| Cow position: | chr29:7840449-7841050 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 368 |
| Conread position: | 47-613 |
| Cow position: | chr29:27250682-27250088 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 368 |
| Conread position: | 47-627 |
| Cow position: | chr29:10824306-10823700 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 318 |
| Conread position: | 48-627 |
| Cow position: | chr29:7431564-7430950 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 372 |
| Conread position: | 49-353 |
| Cow position: | chr29:32640457-32640751 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 187, 41 |
| Conread position: | 50-348 |
| Cow position: | chr29:12796810-12796497 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 50-569 |
| Cow position: | chr29:32315696-32316240 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 365 |
| Conread position: | 71-454 |
| Cow position: | chr29:31180805-31181207 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 339 |
| Conread position: | 89-613 |
| Cow position: | chr29:18857234-18856690 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 90-384 |
| Cow position: | chr29:34609240-34608944 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 14 |
| Conread position: | 90-469 |
| Cow position: | chr29:21427353-21426956 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 90-530 |
| Cow position: | chr29:16109431-16109887 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 173 |
| Conread position: | 90-535 |
| Cow position: | chr29:13853318-13852860 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 63 |
| Conread position: | 95-613 |
| Cow position: | chr29:610904-610358 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 203 |
| Conread position: | 95-613 |
| Cow position: | chr29:43366289-43365748 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 30 |
| Conread position: | 95-632 |
| Cow position: | chr29:27041053-27040497 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 95 |
| Conread position: | 95-702 |
| Cow position: | chr29:803619-803007 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 109-700 |
| Cow position: | chr29:19893486-19894114 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 411 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 67, 140 |
| Conread position: | 125-569 |
| Cow position: | chr29:16017399-16016954 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 128-569 |
| Cow position: | chr29:17662661-17663103 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 235 |
| Conread position: | 145-646 |
| Cow position: | chr29:19884827-19885359 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 263 |
| Conread position: | 153-488 |
| Cow position: | chr29:24198855-24198503 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 218-569 |
| Cow position: | chr29:27981085-27980718 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 182 |
| Conread position: | 224-605 |
| Cow position: | chr29:11841506-11841904 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 230-710 |
| Cow position: | chr29:5983335-5982853 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 333 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 6, 171 |
| Conread position: | 237-627 |
| Cow position: | chr29:14585780-14586191 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 171 |
| Conread position: | 252-613 |
| Cow position: | chr29:670189-669803 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 153 |
| Conread position: | 252-651 |
| Cow position: | chr29:45587478-45587067 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 299-607 |
| Cow position: | chr29:42650203-42650534 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 299-607 |
| Cow position: | chr29:42802063-42802394 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 305-614 |
| Cow position: | chr29:13581996-13582323 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 99 |
| Conread position: | 308-613 |
| Cow position: | chr29:2466399-2466080 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 318-613 |
| Cow position: | chr29:12796420-12796128 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 335-641 |
| Cow position: | chr29:4056112-4056434 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 350-686 |
| Cow position: | chr29:410546-410199 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 44 |
| Conread position: | 402-651 |
| Cow position: | chr29:34925504-34925773 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 461-632 |
| Cow position: | chr29:21426932-21426755 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 110, 49 |
| Conread position: | 461-722 |
| Cow position: | chr29:24709156-24708885 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 568-710 |
| Cow position: | chr29:14086242-14086098 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 568-720 |
| Cow position: | chr29:8331123-8330976 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 568-723 |
| Cow position: | chr29:13648893-13649046 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.