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Cow genome map

           
Conread name:
           
Ova1-OVRM10196B05
        

               
Conread position:
               
1-532
               

               
Cow position:
               
chrX:19185549-19185012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 186
               

               
Conread position:
               
1-613
               

               
Cow position:
               
chrX:2101262-2101907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 199
               

               
Conread position:
               
4-630
               

               
Cow position:
               
chrX:21633184-21632521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 159
               

               
Conread position:
               
5-613
               

               
Cow position:
               
chrX:35017229-35017857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
6-362
               

               
Cow position:
               
chrX:30046715-30046340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 197
               

               
Conread position:
               
7-289
               

               
Cow position:
               
chrX:26628914-26628618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
40, 195
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chrX:5834760-5834405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 186
               

               
Conread position:
               
7-488
               

               
Cow position:
               
chrX:22131290-22130793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 216
               

               
Conread position:
               
7-567
               

               
Cow position:
               
chrX:21489635-21490220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 199
               

               
Conread position:
               
7-569
               

               
Cow position:
               
chrX:17632426-17631836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 419
               

               
Conread position:
               
7-569
               

               
Cow position:
               
chrX:19927714-19928286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 292
               

               
Conread position:
               
7-608
               

               
Cow position:
               
chrX:29951165-29950537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 185
               

               
Conread position:
               
7-613
               

               
Cow position:
               
chrX:20803540-20804175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
7-628
               

               
Cow position:
               
chrX:22813806-22814446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
7-630
               

               
Cow position:
               
chrX:21602288-21602945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 391
               

               
Conread position:
               
7-630
               

               
Cow position:
               
chrX:24122517-24121854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 351
               

               
Conread position:
               
7-632
               

               
Cow position:
               
chrX:24136994-24136336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 334
               

               
Conread position:
               
7-633
               

               
Cow position:
               
chrX:40057660-40056996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 195
               

               
Conread position:
               
7-649
               

               
Cow position:
               
chrX:13007231-13006540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 540
               

               
Conread position:
               
7-710
               

               
Cow position:
               
chrX:21270765-21270050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
7-722
               

               
Cow position:
               
chrX:30369572-30368857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 158
               

               
Conread position:
               
7-723
               

               
Cow position:
               
chrX:18532406-18533149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 216
               

               
Conread position:
               
7-723
               

               
Cow position:
               
chrX:28549304-28550025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 192
               

               
Conread position:
               
8-549
               

               
Cow position:
               
chrX:11669029-11668469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 49
               

               
Conread position:
               
8-572
               

               
Cow position:
               
chrX:6283650-6283096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
8-715
               

               
Cow position:
               
chrX:24139575-24138874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
8-721
               

               
Cow position:
               
chrX:17668884-17668145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 197
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chrX:25187062-25187320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
9-543
               

               
Cow position:
               
chrX:2380193-2380738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 163
               

               
Conread position:
               
9-606
               

               
Cow position:
               
chrX:13413713-13413075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 415
               

               
Conread position:
               
9-611
               

               
Cow position:
               
chrX:24275074-24275716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 441
               

               
Conread position:
               
9-632
               

               
Cow position:
               
chrX:23456168-23455510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 282
               

               
Conread position:
               
9-668
               

               
Cow position:
               
chrX:26767788-26767096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 195
               

               
Conread position:
               
10-710
               

               
Cow position:
               
chrX:2142717-2143428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
14-710
               

               
Cow position:
               
chrX:20698855-20698152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
15-569
               

               
Cow position:
               
chrX:28635005-28634423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
15-609
               

               
Cow position:
               
chrX:26401058-26400425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
15-613
               

               
Cow position:
               
chrX:12655338-12654712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 391
               

               
Conread position:
               
15-613
               

               
Cow position:
               
chrX:20316645-20316007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 136
               

               
Conread position:
               
15-613
               

               
Cow position:
               
chrX:27990368-27989733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 165
               

               
Conread position:
               
15-613
               

               
Cow position:
               
chrX:37848421-37849062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 270
               

               
Conread position:
               
15-666
               

               
Cow position:
               
chrX:30174251-30173569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
17-651
               

               
Cow position:
               
chrX:14787456-14786784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 398
               

               
Conread position:
               
32-613
               

               
Cow position:
               
chrX:6909906-6909298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 392
               

               
Conread position:
               
35-627
               

               
Cow position:
               
chrX:21222359-21222991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 502
               

               
Conread position:
               
39-722
               

               
Cow position:
               
chrX:30142946-30142242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
41-551
               

               
Cow position:
               
chrX:26428591-26428069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
5, 159
               

               
Conread position:
               
41-610
               

               
Cow position:
               
chrX:1833278-1833873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
41-613
               

               
Cow position:
               
chrX:6276146-6275569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 164
               

               
Conread position:
               
41-613
               

               
Cow position:
               
chrX:22619874-22619260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
41-651
               

               
Cow position:
               
chrX:24088842-24089490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
43-613
               

               
Cow position:
               
chrX:5284284-5283687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
43-613
               

               
Cow position:
               
chrX:11465556-11464954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
45-339
               

               
Cow position:
               
chrX:38145503-38145812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
45-569
               

               
Cow position:
               
chrX:16017680-16017149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 180
               

               
Conread position:
               
45-607
               

               
Cow position:
               
chrX:29854121-29853527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 321
               

               
Conread position:
               
45-611
               

               
Cow position:
               
chrX:30179542-30178949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 271
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chrX:970217-970830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 56
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chrX:1546377-1546998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 375
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chrX:15598372-15598993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 384
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chrX:16698744-16699363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 202
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chrX:22487631-22488244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 367
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chrX:30232661-30232045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 268
               

               
Conread position:
               
45-627
               

               
Cow position:
               
chrX:30710797-30711412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
45-632
               

               
Cow position:
               
chrX:6016005-6015392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 147
               

               
Conread position:
               
45-635
               

               
Cow position:
               
chrX:18955072-18954453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 230
               

               
Conread position:
               
45-638
               

               
Cow position:
               
chrX:21828969-21829598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
45-665
               

               
Cow position:
               
chrX:2483197-2482542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
46-390
               

               
Cow position:
               
chrX:29092948-29093305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 313
               

               
Conread position:
               
46-569
               

               
Cow position:
               
chrX:28875948-28875430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 55
               

               
Conread position:
               
46-569
               

               
Cow position:
               
chrX:32095510-32094970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 143
               

               
Conread position:
               
46-627
               

               
Cow position:
               
chrX:26527419-26528039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 374
               

               
Conread position:
               
46-627
               

               
Cow position:
               
chrX:26759147-26758542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 299
               

               
Conread position:
               
46-627
               

               
Cow position:
               
chrX:30184444-30183831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
46-630
               

               
Cow position:
               
chrX:23392158-23391533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 376
               

               
Conread position:
               
46-686
               

               
Cow position:
               
chrX:15127799-15127122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 375
               

               
Conread position:
               
47-382
               

               
Cow position:
               
chrX:20360486-20360138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 271
               

               
Conread position:
               
47-399
               

               
Cow position:
               
chrX:24325701-24325323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
42, 374
               

               
Conread position:
               
47-408
               

               
Cow position:
               
chrX:13052116-13052494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 137
               

               
Conread position:
               
47-436
               

               
Cow position:
               
chrX:31198046-31198467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
45, 374
               

               
Conread position:
               
47-451
               

               
Cow position:
               
chrX:24380755-24381184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 364
               

               
Conread position:
               
47-455
               

               
Cow position:
               
chrX:4795369-4795805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 422
               

               
Conread position:
               
47-506
               

               
Cow position:
               
chrX:30666494-30666008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 357
               

               
Conread position:
               
47-518
               

               
Cow position:
               
chrX:8479150-8479643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 119
               

               
Conread position:
               
47-539
               

               
Cow position:
               
chrX:16236767-16237272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 140
               

               
Conread position:
               
47-555
               

               
Cow position:
               
chrX:12289490-12288957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 363
               

               
Conread position:
               
47-569
               

               
Cow position:
               
chrX:2860355-2859808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 368
               

               
Conread position:
               
47-569
               

               
Cow position:
               
chrX:5395518-5394969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 235
               

               
Conread position:
               
47-609
               

               
Cow position:
               
chrX:7093052-7093642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
47-609
               

               
Cow position:
               
chrX:12478166-12478764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 369
               

               
Conread position:
               
47-609
               

               
Cow position:
               
chrX:28759175-28758597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 309
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:2603492-2604096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 371
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:5299758-5299175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:6873628-6873025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:7751351-7751948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 362
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:8454200-8454800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 215
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:8586539-8587142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 120
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:10532114-10531510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 370
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:12280811-12280222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 295
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:12804407-12803816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 147
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:16275136-16275725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:16363678-16363076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 368
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:17479078-17478474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 155
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:18218848-18219445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 357
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:21290040-21289443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
47-613
               

               
Cow position:
               
chrX:22777760-22778360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 151
               

               
Conread position:
               
47-616
               

               
Cow position:
               
chrX:27426872-27426269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 370
               

               
Conread position:
               
47-627
               

               
Cow position:
               
chrX:30056118-30056708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
47-627
               

               
Cow position:
               
chrX:32466699-32467315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 155
               

               
Conread position:
               
47-632
               

               
Cow position:
               
chrX:21339847-21340472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 182
               

               
Conread position:
               
47-632
               

               
Cow position:
               
chrX:22526157-22525536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
47-633
               

               
Cow position:
               
chrX:31187790-31187176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 370
               

               
Conread position:
               
47-646
               

               
Cow position:
               
chrX:5862842-5863481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 370
               

               
Conread position:
               
47-651
               

               
Cow position:
               
chrX:5324264-5323635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 54
               

               
Conread position:
               
47-651
               

               
Cow position:
               
chrX:8670038-8670679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 157
               

               
Conread position:
               
50-613
               

               
Cow position:
               
chrX:9007791-9008386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 360
               

               
Conread position:
               
50-613
               

               
Cow position:
               
chrX:13077242-13076649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
50-613
               

               
Cow position:
               
chrX:13097816-13097223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
51-408
               

               
Cow position:
               
chrX:8963600-8963230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
51-687
               

               
Cow position:
               
chrX:23018781-23019444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 230
               

               
Conread position:
               
53-632
               

               
Cow position:
               
chrX:27494155-27494779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 378
               

               
Conread position:
               
56-613
               

               
Cow position:
               
chrX:26504649-26505232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
75-613
               

               
Cow position:
               
chrX:7481087-7481651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
75-613
               

               
Cow position:
               
chrX:9193164-9192596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 328
               

               
Conread position:
               
75-651
               

               
Cow position:
               
chrX:39521387-39521995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
90-277
               

               
Cow position:
               
chrX:12182695-12182886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
90-455
               

               
Cow position:
               
chrX:12341693-12342071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 176
               

               
Conread position:
               
90-610
               

               
Cow position:
               
chrX:3085406-3084868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 60
               

               
Conread position:
               
90-610
               

               
Cow position:
               
chrX:15179933-15179386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 315
               

               
Conread position:
               
90-613
               

               
Cow position:
               
chrX:23046640-23047192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 323
               

               
Conread position:
               
90-651
               

               
Cow position:
               
chrX:7029686-7030274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 315
               

               
Conread position:
               
90-686
               

               
Cow position:
               
chrX:24484912-24484292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
91-344
               

               
Cow position:
               
chrX:25332590-25332846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 92
               

               
Conread position:
               
95-613
               

               
Cow position:
               
chrX:982167-982686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 154
               

               
Conread position:
               
95-613
               

               
Cow position:
               
chrX:13398613-13398072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 127
               

               
Conread position:
               
95-627
               

               
Cow position:
               
chrX:319971-320530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 154
               

               
Conread position:
               
95-632
               

               
Cow position:
               
chrX:22583212-22582631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 446
               

               
Conread position:
               
95-708
               

               
Cow position:
               
chrX:22893858-22893235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 43
               

               
Conread position:
               
96-569
               

               
Cow position:
               
chrX:2787711-2787235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
97-613
               

               
Cow position:
               
chrX:29873055-29872517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
103-613
               

               
Cow position:
               
chrX:2563349-2562809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 306
               

               
Conread position:
               
105-607
               

               
Cow position:
               
chrX:12998050-12997537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 268
               

               
Conread position:
               
125-449
               

               
Cow position:
               
chrX:35020516-35020857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
126-570
               

               
Cow position:
               
chrX:21794631-21795089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 202
               

               
Conread position:
               
126-613
               

               
Cow position:
               
chrX:28562679-28562166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 68
               

               
Conread position:
               
154-613
               

               
Cow position:
               
chrX:35529420-35529910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 254
               

               
Conread position:
               
166-666
               

               
Cow position:
               
chrX:5839911-5840436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
179-386
               

               
Cow position:
               
chrX:16935967-16935748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
179-613
               

               
Cow position:
               
chrX:18660193-18659735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
179-627
               

               
Cow position:
               
chrX:29285023-29285479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
180-569
               

               
Cow position:
               
chrX:17250737-17250338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
180-632
               

               
Cow position:
               
chrX:9124948-9125427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
181-627
               

               
Cow position:
               
chrX:23041526-23041060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 220
               

               
Conread position:
               
183-657
               

               
Cow position:
               
chrX:2537180-2536687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 287
               

               
Conread position:
               
186-508
               

               
Cow position:
               
chrX:32468314-32468637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
50, 142
               

               
Conread position:
               
188-344
               

               
Cow position:
               
chrX:21304943-21304782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
189-382
               

               
Cow position:
               
chrX:34988478-34988683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 124
               

               
Conread position:
               
207-610
               

               
Cow position:
               
chrX:41411405-41410976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
229-702
               

               
Cow position:
               
chrX:40247677-40247184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
232-613
               

               
Cow position:
               
chrX:39564288-39563883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 171
               

               
Conread position:
               
241-615
               

               
Cow position:
               
chrX:28603805-28603408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
248-613
               

               
Cow position:
               
chrX:29947364-29947755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 157
               

               
Conread position:
               
248-632
               

               
Cow position:
               
chrX:12670203-12669795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 25
               

               
Conread position:
               
265-613
               

               
Cow position:
               
chrX:37811836-37812210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
280-613
               

               
Cow position:
               
chrX:1943350-1942996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 120
               

               
Conread position:
               
280-632
               

               
Cow position:
               
chrX:26628339-26627965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 115
               

               
Conread position:
               
286-731
               

               
Cow position:
               
chrX:12973532-12973064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 118
               

               
Conread position:
               
306-632
               

               
Cow position:
               
chrX:28584711-28585048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
306-651
               

               
Cow position:
               
chrX:5336737-5336398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
308-508
               

               
Cow position:
               
chrX:21586898-21587098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
154, 10
               

               
Conread position:
               
308-667
               

               
Cow position:
               
chrX:16461408-16461773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
312-682
               

               
Cow position:
               
chrX:35390368-35389984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
318-660
               

               
Cow position:
               
chrX:29998532-29998883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
341-722
               

               
Cow position:
               
chrX:44386237-44386629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
345-627
               

               
Cow position:
               
chrX:38146073-38146368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
351-567
               

               
Cow position:
               
chrX:5834190-5833973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
63, 51
               

               
Conread position:
               
353-613
               

               
Cow position:
               
chrX:21304750-21304478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
359-662
               

               
Cow position:
               
chrX:34988680-34988997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
361-569
               

               
Cow position:
               
chrX:38576039-38575826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
361-722
               

               
Cow position:
               
chrX:31724809-31725185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
364-609
               

               
Cow position:
               
chrX:11663718-11663461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
394-613
               

               
Cow position:
               
chrX:39719253-39719488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 119
               

               
Conread position:
               
401-704
               

               
Cow position:
               
chrX:30044322-30044005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
8, 111
               

               
Conread position:
               
412-646
               

               
Cow position:
               
chrX:31493259-31493503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
416-613
               

               
Cow position:
               
chrX:17050932-17051143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 95
               

               
Conread position:
               
418-651
               

               
Cow position:
               
chrX:12353081-12353328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
419-722
               

               
Cow position:
               
chrX:35021109-35021424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
442-723
               

               
Cow position:
               
chrX:13052497-13052786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
454-723
               

               
Cow position:
               
chrX:22130801-22130517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
458-613
               

               
Cow position:
               
chrX:37142707-37142542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 51
               

               
Conread position:
               
467-696
               

               
Cow position:
               
chrX:37757877-37758097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 22
               

               
Conread position:
               
497-710
               

               
Cow position:
               
chrX:21587114-21587343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 7
               
Show alignments to all cow chromosomes.