Cow genome map
| Conread name: | Ova1-OVRM10197E07 |
| Conread position: | 5-337 |
| Cow position: | chr3:64427168-64426826 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 6-199 |
| Cow position: | chr3:80580175-80580366 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 25, 131 |
| Conread position: | 6-308 |
| Cow position: | chr3:15998427-15998733 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 6-320 |
| Cow position: | chr3:10855179-10854875 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 6-360 |
| Cow position: | chr3:27515408-27515757 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 85 |
| Conread position: | 6-367 |
| Cow position: | chr3:26787150-26787508 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 6-371 |
| Cow position: | chr3:56919200-56919580 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 220 |
| Conread position: | 6-389 |
| Cow position: | chr3:18852091-18852470 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 169, 26 |
| Conread position: | 6-390 |
| Cow position: | chr3:63273271-63273680 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 80, 297 |
| Conread position: | 6-395 |
| Cow position: | chr3:11659582-11659987 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 17, 321 |
| Conread position: | 6-396 |
| Cow position: | chr3:11278547-11278940 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 6-396 |
| Cow position: | chr3:31321468-31321853 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 6-402 |
| Cow position: | chr3:48995898-48996293 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 20, 150 |
| Conread position: | 6-406 |
| Cow position: | chr3:70250259-70249862 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 25 |
| Conread position: | 6-414 |
| Cow position: | chr3:70199926-70200319 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 180, 20 |
| Conread position: | 6-590 |
| Cow position: | chr3:7245971-7245377 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 369 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 6-594 |
| Cow position: | chr3:322734-322123 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 386 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 34, 219 |
| Conread position: | 6-626 |
| Cow position: | chr3:64678567-64679167 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 393 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 6-652 |
| Cow position: | chr3:55190719-55190096 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 429 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 6-693 |
| Cow position: | chr3:68402310-68401602 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 99 |
| Conread position: | 6-705 |
| Cow position: | chr3:36170805-36170116 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 454 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 6-708 |
| Cow position: | chr3:1483162-1483867 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 453 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 155 |
| Conread position: | 6-712 |
| Cow position: | chr3:77453593-77454294 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 448 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 6-721 |
| Cow position: | chr3:16884171-16883489 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 452 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 6-729 |
| Cow position: | chr3:47696940-47697679 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 163 |
| Conread position: | 7-277 |
| Cow position: | chr3:27674583-27674306 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 7-396 |
| Cow position: | chr3:22045027-22044627 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 185 |
| Conread position: | 7-592 |
| Cow position: | chr3:78625417-78625988 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 57 |
| Conread position: | 8-271 |
| Cow position: | chr3:49165273-49165003 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 176 |
| Conread position: | 8-487 |
| Cow position: | chr3:42983113-42982640 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 8-729 |
| Cow position: | chr3:44365169-44365887 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 13-730 |
| Cow position: | chr3:76156711-76157433 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 14-264 |
| Cow position: | chr3:37030151-37030392 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 156 |
| Conread position: | 14-697 |
| Cow position: | chr3:52513613-52514288 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 86 |
| Conread position: | 15-592 |
| Cow position: | chr3:55129494-55130081 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 17-705 |
| Cow position: | chr3:37349005-37348324 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 420 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 88, 155 |
| Conread position: | 25-697 |
| Cow position: | chr3:47691129-47691797 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 446 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 70, 124 |
| Conread position: | 26-302 |
| Cow position: | chr3:64083522-64083798 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 32-698 |
| Cow position: | chr3:5420886-5420196 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 195 |
| Conread position: | 42-569 |
| Cow position: | chr3:76609949-76610469 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 361 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 46-370 |
| Cow position: | chr3:9591880-9591541 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 181 |
| Conread position: | 46-395 |
| Cow position: | chr3:40070173-40069804 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 345 |
| Conread position: | 49-718 |
| Cow position: | chr3:60279407-60278734 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 52-676 |
| Cow position: | chr3:9289789-9290400 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 62-264 |
| Cow position: | chr3:10038388-10038605 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 62-317 |
| Cow position: | chr3:8451725-8451462 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 190 |
| Conread position: | 63-360 |
| Cow position: | chr3:16789052-16789347 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 73-576 |
| Cow position: | chr3:80261641-80261141 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 75-396 |
| Cow position: | chr3:16897294-16896972 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 75-396 |
| Cow position: | chr3:39870686-39870349 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 31, 91 |
| Conread position: | 78-396 |
| Cow position: | chr3:14724325-14724644 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 80-698 |
| Cow position: | chr3:16716628-16716005 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 206 |
| Conread position: | 80-729 |
| Cow position: | chr3:60151039-60151716 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 423 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 27, 149 |
| Conread position: | 85-728 |
| Cow position: | chr3:53158589-53159234 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 409 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 89-704 |
| Cow position: | chr3:199936-200555 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 402 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 99, 129 |
| Conread position: | 89-722 |
| Cow position: | chr3:18862660-18863297 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 396 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 27, 317 |
| Conread position: | 92-396 |
| Cow position: | chr3:26742649-26742338 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 92-402 |
| Cow position: | chr3:28435475-28435160 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 92-722 |
| Cow position: | chr3:34503910-34503279 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 376 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 338 |
| Conread position: | 92-722 |
| Cow position: | chr3:42507989-42507352 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 401 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 93-404 |
| Cow position: | chr3:19216123-19216445 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 115-285 |
| Cow position: | chr3:77623320-77623493 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 115-370 |
| Cow position: | chr3:14922303-14922559 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 147 |
| Conread position: | 228-678 |
| Cow position: | chr3:14017689-14018134 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 39, 19 |
Show alignments to all cow chromosomes.