Cow genome map
| Conread name: | Ova1-OVRM10205C12 |
| Conread position: | 2-720 |
| Cow position: | chr25:33298967-33299683 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 8-388 |
| Cow position: | chr25:34769632-34769251 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 377, 0 |
| Conread position: | 8-647 |
| Cow position: | chr25:34713854-34714493 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 380 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 8-708 |
| Cow position: | chr25:33298719-33299419 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 157 |
| Conread position: | 8-720 |
| Cow position: | chr25:33298887-33299599 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-721 |
| Cow position: | chr25:33298635-33299348 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 327 |
| Conread position: | 8-721 |
| Cow position: | chr25:33299055-33299768 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-721 |
| Cow position: | chr25:33299139-33299848 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 71 |
| Conread position: | 9-708 |
| Cow position: | chr25:36800788-36801475 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 9-721 |
| Cow position: | chr25:36800620-36801332 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-357 |
| Cow position: | chr25:33127877-33128223 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-639 |
| Cow position: | chr25:33157398-33156771 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 232 |
| Conread position: | 11-647 |
| Cow position: | chr25:34769881-34769245 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 11-707 |
| Cow position: | chr25:34769965-34769269 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 154 |
| Conread position: | 11-719 |
| Cow position: | chr25:34770049-34769341 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 222 |
| Conread position: | 11-721 |
| Cow position: | chr25:36800706-36801404 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 220 |
| Conread position: | 14-516 |
| Cow position: | chr25:23420377-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 156, 143 |
| Conread position: | 16-628 |
| Cow position: | chr25:36801371-36801979 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 367, 387 |
| Conread position: | 16-721 |
| Cow position: | chr25:36801215-36801908 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 22-633 |
| Cow position: | chr25:34447276-34447876 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 369 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 121, 115 |
| Conread position: | 36-719 |
| Cow position: | chr25:34770108-34769425 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 36-721 |
| Cow position: | chr25:34446954-34447639 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 129 |
| Conread position: | 37-573 |
| Cow position: | chr25:23420316-23420851 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 376 |
| Conread position: | 42-713 |
| Cow position: | chr25:34447212-34447876 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 42-720 |
| Cow position: | chr25:326519-327203 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 402 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 44-543 |
| Cow position: | chr25:33127742-33128241 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 44-720 |
| Cow position: | chr25:34447046-34447720 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 121 |
| Conread position: | 74-713 |
| Cow position: | chr25:33157419-33156781 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 74-721 |
| Cow position: | chr25:33157503-33156856 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 88-611 |
| Cow position: | chr25:326733-327262 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 210 |
| Conread position: | 99-721 |
| Cow position: | chr25:34446933-34447555 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 66 |
| Conread position: | 100-613 |
| Cow position: | chr25:33144929-33145439 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 65 |
| Conread position: | 101-721 |
| Cow position: | chr25:36800544-36801164 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 102-617 |
| Cow position: | chr25:33305321-33304815 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 277, 210 |
| Conread position: | 104-465 |
| Cow position: | chr25:366725-367082 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 331, 0 |
| Conread position: | 104-715 |
| Cow position: | chr25:33306789-33306191 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 108, 78 |
| Conread position: | 105-719 |
| Cow position: | chr25:33306046-33305438 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 382 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 75, 99 |
| Conread position: | 106-721 |
| Cow position: | chr25:33298565-33299180 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 125 |
| Conread position: | 111-561 |
| Cow position: | chr25:34714041-34714491 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 285, 303 |
| Conread position: | 111-617 |
| Cow position: | chr25:33127727-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 114-624 |
| Cow position: | chr25:34433534-34434037 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 118-719 |
| Cow position: | chr25:33306364-33305771 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 373 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 118-720 |
| Cow position: | chr25:34770110-34769508 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 124-684 |
| Cow position: | chr25:23420319-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 295 |
| Conread position: | 132-720 |
| Cow position: | chr25:33157529-33156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 433 |
| Conread position: | 146-721 |
| Cow position: | chr25:34713824-34714399 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 348 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 169-700 |
| Cow position: | chr25:34433505-34434030 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 229, 103 |
| Conread position: | 169-702 |
| Cow position: | chr25:34713931-34714464 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 185-707 |
| Cow position: | chr25:33305406-33304888 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 201-719 |
| Cow position: | chr25:23420312-23420830 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 218 |
| Conread position: | 210-711 |
| Cow position: | chr25:33127740-33128241 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 195 |
| Conread position: | 210-721 |
| Cow position: | chr25:33298501-33299012 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 199 |
| Conread position: | 234-721 |
| Cow position: | chr25:34770085-34769591 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 242-721 |
| Cow position: | chr25:34432990-34433487 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 153, 163 |
| Conread position: | 256-531 |
| Cow position: | chr25:326991-327266 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 256-721 |
| Cow position: | chr25:326397-326862 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 260-721 |
| Cow position: | chr25:34446926-34447387 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 145 |
| Conread position: | 263-720 |
| Cow position: | chr25:33298470-33298927 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 89 |
| Conread position: | 272-647 |
| Cow position: | chr25:346448-346823 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 124, 141 |
| Conread position: | 272-720 |
| Cow position: | chr25:22235829-22236277 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 272-721 |
| Cow position: | chr25:33144849-33145295 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 129, 148 |
| Conread position: | 282-675 |
| Cow position: | chr25:34732598-34732205 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 132 |
| Conread position: | 286-720 |
| Cow position: | chr25:33127732-33128166 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 287-721 |
| Cow position: | chr25:34763261-34763692 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 292-721 |
| Cow position: | chr25:34770104-34769675 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-720 |
| Cow position: | chr25:23420191-23420579 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 326-721 |
| Cow position: | chr25:34433494-34433886 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 326-721 |
| Cow position: | chr25:36800517-36800912 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 121, 110 |
| Conread position: | 328-721 |
| Cow position: | chr25:34770152-34769759 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 338-720 |
| Cow position: | chr25:33127700-33128082 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 347-720 |
| Cow position: | chr25:25652431-25652804 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 347-720 |
| Cow position: | chr25:33298470-33298843 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 354-720 |
| Cow position: | chr25:34732610-34732244 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 356-637 |
| Cow position: | chr25:414774-414499 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 356-719 |
| Cow position: | chr25:22235829-22236192 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 374-721 |
| Cow position: | chr25:23420317-23420664 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 406-720 |
| Cow position: | chr25:18642203-18641888 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 126, 5 |
| Conread position: | 413-637 |
| Cow position: | chr25:427302-427526 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-721 |
| Cow position: | chr25:33157583-33157276 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 439-720 |
| Cow position: | chr25:366724-367005 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 439-721 |
| Cow position: | chr25:346447-346729 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-721 |
| Cow position: | chr25:22235829-22236110 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 44 |
| Conread position: | 443-721 |
| Cow position: | chr25:34446857-34447135 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-720 |
| Cow position: | chr25:33127661-33127914 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 60, 66 |
Show alignments to all cow chromosomes.