Cow genome map

Conread name: Ova1-OVRM10210C04

Conread position: 1-273
Cow position: chr11:15535394-15535664 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 49

Conread position: 1-370
Cow position: chr11:54254378-54254743 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 246
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 13, 104

Conread position: 1-621
Cow position: chr11:37285536-37286149 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 405
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 66, 11

Conread position: 1-652
Cow position: chr11:63654405-63653737 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 39

Conread position: 1-694
Cow position: chr11:18070009-18069287 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 19

Conread position: 1-712
Cow position: chr11:26070120-26069383 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 191

Conread position: 1-727
Cow position: chr11:19063141-19062399 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 37

Conread position: 1-727
Cow position: chr11:44582407-44581666 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 77

Conread position: 3-379
Cow position: chr11:80473341-80472981 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 256
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 308, 17

Conread position: 3-613
Cow position: chr11:73462210-73461579 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 417
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 9, 134

Conread position: 3-716
Cow position: chr11:75554066-75553357 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 174

Conread position: 4-700
Cow position: chr11:26784195-26784902 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 40

Conread position: 4-719
Cow position: chr11:20733304-20732564 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 151

Conread position: 4-719
Cow position: chr11:67845636-67844902 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 4-727
Cow position: chr11:26548460-26549203 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 151

Conread position: 4-727
Cow position: chr11:28228831-28228092 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 125

Conread position: 4-727
Cow position: chr11:53286233-53285498 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 124

Conread position: 4-727
Cow position: chr11:73134224-73134973 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 124

Conread position: 4-728
Cow position: chr11:40775065-40774352 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 57

Conread position: 4-729
Cow position: chr11:67451428-67452169 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 123

Conread position: 5-288
Cow position: chr11:35504271-35503996 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 57

Conread position: 5-732
Cow position: chr11:33189200-33188432 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 476
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 248

Conread position: 7-727
Cow position: chr11:17106745-17106011 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 31

Conread position: 9-241
Cow position: chr11:31932384-31932614 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 56, 49

Conread position: 9-279
Cow position: chr11:26564153-26563899 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 16, 81

Conread position: 9-698
Cow position: chr11:39804671-39805374 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 12

Conread position: 9-729
Cow position: chr11:7117361-7118085 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 115

Conread position: 12-698
Cow position: chr11:64355767-64356434 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 25

Conread position: 14-192
Cow position: chr11:21444407-21444585 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 105

Conread position: 14-346
Cow position: chr11:2882477-2882146 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 228
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 36, 30

Conread position: 14-517
Cow position: chr11:57627108-57626598 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 114

Conread position: 14-721
Cow position: chr11:44517920-44517194 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr11:3493933-3494657 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr11:9733733-9733005 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr11:32452772-32453509 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 25

Conread position: 14-727
Cow position: chr11:61400133-61399426 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-734
Cow position: chr11:17547107-17547840 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 16-648
Cow position: chr11:66730035-66730672 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 129

Conread position: 17-324
Cow position: chr11:54216311-54216007 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 216
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 53, 44

Conread position: 17-727
Cow position: chr11:12357466-12356724 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 44

Conread position: 17-727
Cow position: chr11:41169746-41169028 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 45

Conread position: 17-727
Cow position: chr11:43513687-43512951 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 43

Conread position: 21-700
Cow position: chr11:76373046-76372386 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 21-721
Cow position: chr11:46779895-46779194 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 137

Conread position: 21-727
Cow position: chr11:67154638-67155354 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 133

Conread position: 22-727
Cow position: chr11:4026658-4025933 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 106

Conread position: 23-727
Cow position: chr11:10848403-10849115 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 135

Conread position: 37-319
Cow position: chr11:36763910-36764191 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 14, 79

Conread position: 41-697
Cow position: chr11:29232013-29231342 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 20

Conread position: 52-550
Cow position: chr11:27669005-27668503 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 50

Conread position: 52-627
Cow position: chr11:2833313-2833867 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 76

Conread position: 52-729
Cow position: chr11:1489183-1488500 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 76

Conread position: 65-578
Cow position: chr11:44049516-44050044 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 326
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 53

Conread position: 66-688
Cow position: chr11:44231463-44232102 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 57

Conread position: 83-727
Cow position: chr11:13064964-13064301 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 44

Conread position: 87-700
Cow position: chr11:21475145-21475752 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 71

Conread position: 144-658
Cow position: chr11:17281404-17280892 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 41

Conread position: 147-727
Cow position: chr11:47738461-47737871 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 36

Conread position: 147-727
Cow position: chr11:50836589-50835986 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 46

Conread position: 176-571
Cow position: chr11:13048663-13048254 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 85

Conread position: 212-690
Cow position: chr11:4055186-4054693 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 330
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 101, 24

Conread position: 219-727
Cow position: chr11:15986398-15986923 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 98

Conread position: 223-426
Cow position: chr11:41234165-41234371 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 88, 0

Conread position: 223-721
Cow position: chr11:11590117-11590629 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 184

Conread position: 233-727
Cow position: chr11:86876723-86876207 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 243

Conread position: 245-726
Cow position: chr11:31863257-31863763 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 43

Conread position: 281-659
Cow position: chr11:81340380-81340003 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 26, 7

Conread position: 290-634
Cow position: chr11:34018221-34018581 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 242
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 182

Conread position: 305-727
Cow position: chr11:1134144-1134575 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 286
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 24, 82

Conread position: 331-726
Cow position: chr11:11578479-11578058 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 286
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 88, 133

Conread position: 337-726
Cow position: chr11:40405786-40405377 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 51

Show alignments to all cow chromosomes.