Cow genome map
| Conread name: | Ova1-OVRM10210C04 |
| Conread position: | 1-356 |
| Cow position: | chr16:41200299-41199954 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 50 |
| Conread position: | 1-502 |
| Cow position: | chr16:19150054-19149564 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 1-602 |
| Cow position: | chr16:10375069-10374456 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 161 |
| Conread position: | 1-622 |
| Cow position: | chr16:837847-838479 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 62 |
| Conread position: | 1-721 |
| Cow position: | chr16:5890526-5891267 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 188 |
| Conread position: | 1-729 |
| Cow position: | chr16:49221349-49220646 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 8 |
| Conread position: | 2-264 |
| Cow position: | chr16:27714280-27714033 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 2-689 |
| Cow position: | chr16:19779116-19778413 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 3-333 |
| Cow position: | chr16:17056440-17056114 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 3-726 |
| Cow position: | chr16:51403356-51402611 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 3-727 |
| Cow position: | chr16:15567793-15568529 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 4-271 |
| Cow position: | chr16:19638597-19638852 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 77, 57 |
| Conread position: | 4-421 |
| Cow position: | chr16:49255693-49255284 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 4-444 |
| Cow position: | chr16:16520227-16519799 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 77, 57 |
| Conread position: | 4-517 |
| Cow position: | chr16:28196709-28196188 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 4-519 |
| Cow position: | chr16:55049337-55048855 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 224, 33 |
| Conread position: | 4-706 |
| Cow position: | chr16:3088669-3087949 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 157 |
| Conread position: | 4-716 |
| Cow position: | chr16:18497765-18497052 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 32 |
| Conread position: | 4-726 |
| Cow position: | chr16:25086153-25086886 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 149 |
| Conread position: | 4-726 |
| Cow position: | chr16:47474794-47475512 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 4-727 |
| Cow position: | chr16:33064-33807 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 157 |
| Conread position: | 4-727 |
| Cow position: | chr16:8815568-8814835 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 57 |
| Conread position: | 9-327 |
| Cow position: | chr16:11781854-11781546 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 9-569 |
| Cow position: | chr16:26978669-26979213 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 53 |
| Conread position: | 9-729 |
| Cow position: | chr16:30071973-30072675 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 24 |
| Conread position: | 14-228 |
| Cow position: | chr16:21186161-21186373 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-231 |
| Cow position: | chr16:28169808-28169588 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-242 |
| Cow position: | chr16:11284138-11284364 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-305 |
| Cow position: | chr16:7464861-7465148 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 14-317 |
| Cow position: | chr16:19080512-19080814 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-320 |
| Cow position: | chr16:23251891-23251577 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 14-726 |
| Cow position: | chr16:23535344-23534640 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 14-727 |
| Cow position: | chr16:12537401-12536676 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 47 |
| Conread position: | 14-727 |
| Cow position: | chr16:27594053-27594783 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 14-727 |
| Cow position: | chr16:28470528-28469785 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 16-249 |
| Cow position: | chr16:3828731-3828514 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 16-477 |
| Cow position: | chr16:4367639-4368100 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 305 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 16-726 |
| Cow position: | chr16:34530857-34531562 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 46 |
| Conread position: | 17-629 |
| Cow position: | chr16:25456929-25456308 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 136 |
| Conread position: | 17-727 |
| Cow position: | chr16:10438801-10439529 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 17-727 |
| Cow position: | chr16:25442176-25442901 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 139 |
| Conread position: | 21-266 |
| Cow position: | chr16:26105508-26105256 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 21-446 |
| Cow position: | chr16:25001744-25001311 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 21-661 |
| Cow position: | chr16:32937075-32937709 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 26 |
| Conread position: | 23-342 |
| Cow position: | chr16:4478415-4478097 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 23-734 |
| Cow position: | chr16:2238207-2237493 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 88 |
| Conread position: | 24-721 |
| Cow position: | chr16:10967521-10966832 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 34 |
| Conread position: | 24-726 |
| Cow position: | chr16:52591121-52590412 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 27-424 |
| Cow position: | chr16:28436908-28436510 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 83 |
| Conread position: | 29-726 |
| Cow position: | chr16:1960051-1959353 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 88 |
| Conread position: | 34-734 |
| Cow position: | chr16:41754047-41753333 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 37-734 |
| Cow position: | chr16:41571960-41572682 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 161 |
| Conread position: | 62-726 |
| Cow position: | chr16:1860825-1861514 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 62-727 |
| Cow position: | chr16:23671298-23671972 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 65-727 |
| Cow position: | chr16:5527789-5527120 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 60 |
| Conread position: | 74-710 |
| Cow position: | chr16:28158163-28158840 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 54 |
| Conread position: | 81-369 |
| Cow position: | chr16:41166065-41165773 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 8, 110 |
| Conread position: | 81-379 |
| Cow position: | chr16:39824530-39824829 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 119 |
| Conread position: | 81-664 |
| Cow position: | chr16:23801535-23800931 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 385 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 138, 43 |
| Conread position: | 81-729 |
| Cow position: | chr16:25258409-25259080 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 103-726 |
| Cow position: | chr16:337820-338448 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 135-524 |
| Cow position: | chr16:41762484-41762876 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 137-726 |
| Cow position: | chr16:49233814-49233228 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 401 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 168-726 |
| Cow position: | chr16:18667086-18667660 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 26 |
| Conread position: | 223-486 |
| Cow position: | chr16:12955795-12955535 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 13 |
| Conread position: | 236-727 |
| Cow position: | chr16:5119257-5118743 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 240 |
| Conread position: | 246-721 |
| Cow position: | chr16:23809132-23809629 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 180, 30 |
| Conread position: | 270-726 |
| Cow position: | chr16:42735785-42735328 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 278-721 |
| Cow position: | chr16:46628787-46629245 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 308 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 33, 124 |
| Conread position: | 310-721 |
| Cow position: | chr16:20193335-20192905 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 312-721 |
| Cow position: | chr16:3828501-3828064 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 325-568 |
| Cow position: | chr16:25740114-25740360 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 325-727 |
| Cow position: | chr16:23251117-23250708 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 108 |
| Conread position: | 327-727 |
| Cow position: | chr16:4474751-4474329 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 91, 409 |
| Conread position: | 340-661 |
| Cow position: | chr16:44899784-44899458 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 185, 86 |
Show alignments to all cow chromosomes.