Cow genome map

Conread name: Ova1-OVRM10210C04

Conread position: 1-292
Cow position: chr2:36076491-36076205 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 11

Conread position: 1-379
Cow position: chr2:31899344-31898973 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 262
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 11

Conread position: 1-392
Cow position: chr2:31662834-31663208 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 259
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 268, 13

Conread position: 1-641
Cow position: chr2:36975865-36976495 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 12

Conread position: 1-721
Cow position: chr2:72187730-72187014 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 50

Conread position: 1-729
Cow position: chr2:24471866-24471127 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 19

Conread position: 2-289
Cow position: chr2:77129741-77129468 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 40, 9

Conread position: 3-382
Cow position: chr2:63291211-63290847 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 263
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 24, 70

Conread position: 3-496
Cow position: chr2:3323798-3323303 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 35

Conread position: 3-517
Cow position: chr2:15576076-15575564 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 10

Conread position: 3-557
Cow position: chr2:36029612-36029063 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 373
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 311, 58

Conread position: 3-721
Cow position: chr2:35356778-35357491 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 93

Conread position: 3-727
Cow position: chr2:65937469-65936722 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 11

Conread position: 4-429
Cow position: chr2:16291449-16291873 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 123

Conread position: 4-495
Cow position: chr2:49628540-49629019 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 123

Conread position: 4-550
Cow position: chr2:78743344-78743874 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 24

Conread position: 4-634
Cow position: chr2:34051920-34052571 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 141

Conread position: 4-665
Cow position: chr2:72681346-72680698 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 74

Conread position: 4-693
Cow position: chr2:47602502-47601791 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 153

Conread position: 4-693
Cow position: chr2:55483388-55482710 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 182

Conread position: 4-700
Cow position: chr2:51618014-51618720 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 17

Conread position: 4-708
Cow position: chr2:39422387-39423110 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 4-716
Cow position: chr2:574356-575079 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 39

Conread position: 4-717
Cow position: chr2:16074769-16074050 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 100

Conread position: 4-718
Cow position: chr2:50323887-50324570 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 40

Conread position: 4-721
Cow position: chr2:4402396-4401651 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 4-726
Cow position: chr2:6006077-6005344 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 58

Conread position: 4-726
Cow position: chr2:32458288-32457554 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 132

Conread position: 4-726
Cow position: chr2:44934217-44933502 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 28

Conread position: 4-726
Cow position: chr2:45938919-45938196 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 90

Conread position: 4-727
Cow position: chr2:25028529-25027801 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 43

Conread position: 4-727
Cow position: chr2:28648839-28648103 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 113

Conread position: 4-727
Cow position: chr2:47037671-47036926 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 78

Conread position: 4-727
Cow position: chr2:80291990-80291262 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 57

Conread position: 5-727
Cow position: chr2:53540704-53541442 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 10

Conread position: 7-726
Cow position: chr2:9189274-9188546 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 33

Conread position: 7-727
Cow position: chr2:9958301-9957567 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 41

Conread position: 9-424
Cow position: chr2:34473813-34473414 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 35

Conread position: 9-582
Cow position: chr2:38801038-38800467 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 379
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 64, 51

Conread position: 12-727
Cow position: chr2:44966355-44967053 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 464
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 30, 39

Conread position: 13-498
Cow position: chr2:13481915-13481458 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 328
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 237, 48

Conread position: 14-426
Cow position: chr2:2412024-2411602 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 287
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 24

Conread position: 14-721
Cow position: chr2:364295-363566 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-721
Cow position: chr2:52617248-52617975 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr2:6962290-6963016 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 48

Conread position: 14-727
Cow position: chr2:9908688-9909429 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr2:10264631-10263910 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 30

Conread position: 14-727
Cow position: chr2:26904981-26904268 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr2:26922199-26922932 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr2:41048277-41047523 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr2:41687543-41688277 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 109

Conread position: 14-727
Cow position: chr2:57336318-57337066 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-729
Cow position: chr2:10610873-10610134 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 16-459
Cow position: chr2:45967257-45966817 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 117

Conread position: 17-727
Cow position: chr2:25887771-25887048 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 44

Conread position: 21-268
Cow position: chr2:31298571-31298813 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 41, 135

Conread position: 21-271
Cow position: chr2:78763413-78763665 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 124

Conread position: 21-716
Cow position: chr2:45916059-45915351 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 41

Conread position: 21-729
Cow position: chr2:6880133-6880874 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 21-734
Cow position: chr2:11693261-11693955 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 65

Conread position: 25-379
Cow position: chr2:36082592-36082938 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 90

Conread position: 32-346
Cow position: chr2:36992966-36993274 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 27, 91

Conread position: 34-377
Cow position: chr2:43961476-43961794 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 138, 26

Conread position: 36-424
Cow position: chr2:51988992-51988606 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 30, 82

Conread position: 50-418
Cow position: chr2:54408810-54408462 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 12, 104

Conread position: 52-621
Cow position: chr2:74806375-74806954 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 370
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 219, 10

Conread position: 55-521
Cow position: chr2:2394571-2395052 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 311
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 54, 14

Conread position: 75-340
Cow position: chr2:11558619-11558873 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 75-721
Cow position: chr2:12696631-12695967 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 29

Conread position: 81-710
Cow position: chr2:14209983-14209334 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 63

Conread position: 87-734
Cow position: chr2:72906374-72905710 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 40

Conread position: 91-345
Cow position: chr2:53429798-53430054 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 52, 14

Conread position: 91-608
Cow position: chr2:43676694-43677225 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 335
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 58, 34

Conread position: 100-726
Cow position: chr2:10731996-10731362 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 54

Conread position: 128-726
Cow position: chr2:14823937-14824533 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 57

Conread position: 133-674
Cow position: chr2:56888630-56889188 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 49

Conread position: 153-727
Cow position: chr2:50982227-50981643 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 32

Conread position: 188-485
Cow position: chr2:12363041-12362731 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 88, 96

Conread position: 195-719
Cow position: chr2:47600739-47600189 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 358
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 77, 64

Conread position: 214-557
Cow position: chr2:42361302-42360943 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 243
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 23, 102

Conread position: 228-627
Cow position: chr2:37789028-37788622 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 284
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 84, 9

Conread position: 230-717
Cow position: chr2:780422-779911 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 345
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 84, 150

Conread position: 239-727
Cow position: chr2:11558843-11559355 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 112

Conread position: 246-518
Cow position: chr2:53555495-53555787 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 66, 144

Conread position: 309-726
Cow position: chr2:5869067-5868627 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 73

Conread position: 310-511
Cow position: chr2:314823-314614 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 21, 78

Conread position: 310-616
Cow position: chr2:33082899-33082578 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 165

Conread position: 315-721
Cow position: chr2:210970-210561 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 156

Conread position: 320-634
Cow position: chr2:31454540-31454866 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 235
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 75, 68

Conread position: 327-727
Cow position: chr2:975601-975178 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 300

Conread position: 328-721
Cow position: chr2:44092457-44092858 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 275
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 193, 103

Conread position: 335-726
Cow position: chr2:45677586-45677990 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 279
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 84, 139

Show alignments to all cow chromosomes.