Cow genome map

Conread name: Ova1-OVRM10210C04

Conread position: 1-348
Cow position: chr3:29338760-29338414 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 12, 77

Conread position: 1-379
Cow position: chr3:3057953-3058334 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 260
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 72, 23

Conread position: 1-424
Cow position: chr3:16899033-16898639 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 281
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 42, 61

Conread position: 1-521
Cow position: chr3:67164433-67164957 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 43

Conread position: 1-646
Cow position: chr3:19832774-19832119 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 11

Conread position: 1-650
Cow position: chr3:2918614-2919273 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 8

Conread position: 1-727
Cow position: chr3:40339007-40338258 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 45

Conread position: 2-357
Cow position: chr3:11541919-11542263 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 38

Conread position: 2-676
Cow position: chr3:55892558-55893210 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 32

Conread position: 3-275
Cow position: chr3:55486145-55486409 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 10, 94

Conread position: 3-330
Cow position: chr3:46922606-46922293 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 59

Conread position: 3-429
Cow position: chr3:52653503-52653092 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 104

Conread position: 3-519
Cow position: chr3:58948686-58949196 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 26

Conread position: 3-716
Cow position: chr3:53516747-53517488 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 50

Conread position: 4-267
Cow position: chr3:70888286-70888539 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 69, 40

Conread position: 4-414
Cow position: chr3:63002398-63002006 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 283
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 50, 95

Conread position: 4-478
Cow position: chr3:18354858-18354405 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 315
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 148, 57

Conread position: 4-519
Cow position: chr3:2854295-2853790 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 122

Conread position: 4-646
Cow position: chr3:56100536-56099901 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 78

Conread position: 4-712
Cow position: chr3:30617774-30617053 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 124

Conread position: 4-726
Cow position: chr3:38494388-38495127 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 40

Conread position: 4-727
Cow position: chr3:7247684-7248421 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 4-727
Cow position: chr3:19800026-19799293 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 4-727
Cow position: chr3:68698827-68698086 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 4-727
Cow position: chr3:68872609-68871867 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 4-728
Cow position: chr3:6783514-6784256 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 90

Conread position: 5-587
Cow position: chr3:60263873-60263276 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 384
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 15, 94

Conread position: 5-715
Cow position: chr3:16887737-16887025 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 93

Conread position: 5-726
Cow position: chr3:32621893-32621157 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 149

Conread position: 7-556
Cow position: chr3:20382177-20382745 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 31

Conread position: 9-726
Cow position: chr3:3840358-3839637 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 125

Conread position: 9-726
Cow position: chr3:6686955-6687683 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 35

Conread position: 12-379
Cow position: chr3:65208059-65207702 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 236
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 128, 34

Conread position: 14-498
Cow position: chr3:51364630-51364141 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-519
Cow position: chr3:31416176-31416685 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 117

Conread position: 14-541
Cow position: chr3:45033898-45034434 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-560
Cow position: chr3:64016214-64015669 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 178

Conread position: 14-647
Cow position: chr3:3524180-3524816 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-661
Cow position: chr3:2368181-2367534 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-726
Cow position: chr3:63241081-63240352 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 58

Conread position: 14-726
Cow position: chr3:72671368-72670668 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 51

Conread position: 14-727
Cow position: chr3:2709712-2708980 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 142

Conread position: 14-727
Cow position: chr3:4287245-4287974 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 106

Conread position: 14-727
Cow position: chr3:19879802-19880533 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 50

Conread position: 14-727
Cow position: chr3:27919583-27920296 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr3:29330133-29329400 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr3:34506187-34505463 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 96

Conread position: 14-727
Cow position: chr3:41209446-41208723 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-727
Cow position: chr3:46860134-46859404 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 114

Conread position: 14-727
Cow position: chr3:56295344-56296075 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 25

Conread position: 14-727
Cow position: chr3:64026979-64026248 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 141

Conread position: 14-728
Cow position: chr3:30330964-30330253 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 14-728
Cow position: chr3:49136413-49135674 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 47

Conread position: 15-727
Cow position: chr3:36863301-36862567 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 23

Conread position: 16-326
Cow position: chr3:34198043-34198339 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 203, 7

Conread position: 16-379
Cow position: chr3:47080252-47079889 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 16-727
Cow position: chr3:2869946-2870678 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 16-727
Cow position: chr3:29575966-29575231 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 139

Conread position: 16-727
Cow position: chr3:34029767-34029033 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 63

Conread position: 17-723
Cow position: chr3:595296-596012 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 122

Conread position: 19-723
Cow position: chr3:37626145-37626859 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 9

Conread position: 21-196
Cow position: chr3:48229313-48229135 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 44, 139

Conread position: 21-377
Cow position: chr3:64823267-64823623 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 105

Conread position: 21-379
Cow position: chr3:15054521-15054199 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 286, 40

Conread position: 21-519
Cow position: chr3:77424780-77425260 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 336
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 40

Conread position: 21-726
Cow position: chr3:29579787-29580495 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 22

Conread position: 25-690
Cow position: chr3:56146471-56147156 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 119

Conread position: 26-544
Cow position: chr3:1742499-1743029 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 12

Conread position: 28-727
Cow position: chr3:23206700-23205986 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 33

Conread position: 31-727
Cow position: chr3:56327286-56328007 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 76

Conread position: 40-263
Cow position: chr3:27691856-27692066 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 7

Conread position: 43-728
Cow position: chr3:6495678-6496367 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 424
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 65, 18

Conread position: 44-727
Cow position: chr3:66621390-66622100 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 18

Conread position: 49-303
Cow position: chr3:2509849-2509599 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 19, 12

Conread position: 50-233
Cow position: chr3:72783745-72783566 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 87

Conread position: 50-494
Cow position: chr3:18462638-18462202 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 71

Conread position: 54-302
Cow position: chr3:56398385-56398620 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 87, 69

Conread position: 55-568
Cow position: chr3:7313271-7312756 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 355
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 82, 20

Conread position: 55-726
Cow position: chr3:19720456-19719770 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 68

Conread position: 64-277
Cow position: chr3:40616635-40616429 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 66-700
Cow position: chr3:76380847-76380214 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 30

Conread position: 66-729
Cow position: chr3:79122388-79121717 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 98

Conread position: 91-673
Cow position: chr3:84197057-84197663 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 36

Conread position: 100-721
Cow position: chr3:62503371-62503991 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 20

Conread position: 111-718
Cow position: chr3:27864437-27865051 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 10

Conread position: 125-726
Cow position: chr3:74851861-74851261 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 62

Conread position: 129-727
Cow position: chr3:16224158-16224782 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 52

Conread position: 136-414
Cow position: chr3:73302551-73302816 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 175, 16

Conread position: 144-727
Cow position: chr3:65208471-65209066 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 39

Conread position: 188-727
Cow position: chr3:54291251-54290699 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 45

Conread position: 191-730
Cow position: chr3:12566095-12565562 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 370
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 40, 22

Conread position: 197-726
Cow position: chr3:19945581-19946135 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 264-692
Cow position: chr3:51857287-51856840 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 212

Conread position: 301-727
Cow position: chr3:19940371-19940814 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 169

Conread position: 311-726
Cow position: chr3:15188261-15188682 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 291
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 18, 164

Conread position: 325-727
Cow position: chr3:58784689-58784266 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 149

Show alignments to all cow chromosomes.