Cow genome map
| Conread name: | Ova1-OVRM10210C04 |
| Conread position: | 1-414 |
| Cow position: | chr5:55834728-55834349 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 310, 56 |
| Conread position: | 1-717 |
| Cow position: | chr5:37654976-37655683 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 1-726 |
| Cow position: | chr5:23959282-23958534 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 1-727 |
| Cow position: | chr5:10855770-10855024 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 63 |
| Conread position: | 1-727 |
| Cow position: | chr5:24099712-24100438 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 78 |
| Conread position: | 3-284 |
| Cow position: | chr5:42506057-42506335 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 3-598 |
| Cow position: | chr5:9038080-9037493 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 3-622 |
| Cow position: | chr5:31255515-31256146 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 398 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 3-646 |
| Cow position: | chr5:52434791-52435462 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 182 |
| Conread position: | 3-717 |
| Cow position: | chr5:18400632-18399920 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 36 |
| Conread position: | 3-726 |
| Cow position: | chr5:46668995-46669725 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 12 |
| Conread position: | 3-727 |
| Cow position: | chr5:37733400-37734146 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 156 |
| Conread position: | 4-333 |
| Cow position: | chr5:55653792-55653467 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 62, 124 |
| Conread position: | 4-379 |
| Cow position: | chr5:61081162-61080783 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 4-421 |
| Cow position: | chr5:23669077-23668671 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 287 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 60, 116 |
| Conread position: | 4-617 |
| Cow position: | chr5:11115698-11115095 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 127 |
| Conread position: | 4-618 |
| Cow position: | chr5:32281712-32281125 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 57 |
| Conread position: | 4-628 |
| Cow position: | chr5:41527743-41527112 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 4-653 |
| Cow position: | chr5:27003287-27003945 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 179 |
| Conread position: | 4-653 |
| Cow position: | chr5:47830025-47829357 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 124 |
| Conread position: | 4-698 |
| Cow position: | chr5:18885481-18884789 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 119 |
| Conread position: | 4-717 |
| Cow position: | chr5:29767178-29767884 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 4-721 |
| Cow position: | chr5:58197068-58197806 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 126 |
| Conread position: | 4-726 |
| Cow position: | chr5:10842333-10841586 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 128 |
| Conread position: | 4-726 |
| Cow position: | chr5:18273814-18274543 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 4-726 |
| Cow position: | chr5:48533041-48533739 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 15 |
| Conread position: | 4-727 |
| Cow position: | chr5:10775217-10774468 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 4-727 |
| Cow position: | chr5:31707615-31708357 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 4-727 |
| Cow position: | chr5:46665062-46665793 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 5-348 |
| Cow position: | chr5:26980513-26980830 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 5-429 |
| Cow position: | chr5:15375760-15376162 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 76, 56 |
| Conread position: | 5-617 |
| Cow position: | chr5:64794621-64795224 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 179 |
| Conread position: | 6-729 |
| Cow position: | chr5:40923584-40922882 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 9 |
| Conread position: | 7-379 |
| Cow position: | chr5:27908213-27907844 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 9-269 |
| Cow position: | chr5:63076884-63076616 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 188 |
| Conread position: | 9-619 |
| Cow position: | chr5:23230051-23230658 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 5 |
| Conread position: | 9-661 |
| Cow position: | chr5:31100371-31099711 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 148 |
| Conread position: | 12-631 |
| Cow position: | chr5:53945904-53946514 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 105 |
| Conread position: | 14-379 |
| Cow position: | chr5:32951964-32952321 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 14-414 |
| Cow position: | chr5:46808375-46808765 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-517 |
| Cow position: | chr5:35301161-35301671 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-541 |
| Cow position: | chr5:18664846-18665365 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-674 |
| Cow position: | chr5:988006-987328 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-726 |
| Cow position: | chr5:4757114-4756388 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 85 |
| Conread position: | 14-727 |
| Cow position: | chr5:5104285-5105010 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr5:10813688-10812954 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr5:26078130-26077394 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr5:46777456-46778189 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr5:59061700-59062431 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 14-728 |
| Cow position: | chr5:32773827-32774566 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-729 |
| Cow position: | chr5:18121420-18120684 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 15-727 |
| Cow position: | chr5:12731646-12730923 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 17-726 |
| Cow position: | chr5:59283382-59284097 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 110 |
| Conread position: | 21-379 |
| Cow position: | chr5:41960675-41960319 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 21-697 |
| Cow position: | chr5:14784296-14783620 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 48 |
| Conread position: | 21-717 |
| Cow position: | chr5:24151845-24152561 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 22-727 |
| Cow position: | chr5:7274914-7275625 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 26-700 |
| Cow position: | chr5:35527022-35527698 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 18 |
| Conread position: | 36-633 |
| Cow position: | chr5:13046741-13047336 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 36-734 |
| Cow position: | chr5:6587500-6586786 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 41-379 |
| Cow position: | chr5:51308761-51308440 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 48-269 |
| Cow position: | chr5:21145182-21144977 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 48-719 |
| Cow position: | chr5:54620150-54620828 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 68 |
| Conread position: | 50-723 |
| Cow position: | chr5:34298025-34298701 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 19 |
| Conread position: | 52-645 |
| Cow position: | chr5:69622692-69623296 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 397 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 176, 39 |
| Conread position: | 52-730 |
| Cow position: | chr5:62771862-62771193 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 60 |
| Conread position: | 55-617 |
| Cow position: | chr5:7677389-7677956 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 365 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 188, 60 |
| Conread position: | 55-727 |
| Cow position: | chr5:24295725-24296397 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 23 |
| Conread position: | 112-566 |
| Cow position: | chr5:28242196-28242639 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 298 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 194, 39 |
| Conread position: | 114-728 |
| Cow position: | chr5:4684640-4684010 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 69 |
| Conread position: | 147-652 |
| Cow position: | chr5:27197806-27198324 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 38 |
| Conread position: | 148-694 |
| Cow position: | chr5:50947829-50948411 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 46 |
| Conread position: | 157-426 |
| Cow position: | chr5:2459190-2459457 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 151, 28 |
| Conread position: | 168-517 |
| Cow position: | chr5:41376636-41376281 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 17 |
| Conread position: | 172-368 |
| Cow position: | chr5:23236138-23236331 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 135, 11 |
| Conread position: | 189-727 |
| Cow position: | chr5:307178-306618 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 159 |
| Conread position: | 199-727 |
| Cow position: | chr5:40131358-40130803 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 278 |
| Conread position: | 220-589 |
| Cow position: | chr5:31122320-31121933 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 224-727 |
| Cow position: | chr5:51744552-51745061 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 52 |
| Conread position: | 229-727 |
| Cow position: | chr5:2975065-2975585 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 373 |
| Conread position: | 246-727 |
| Cow position: | chr5:37378418-37378922 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 230 |
| Conread position: | 263-596 |
| Cow position: | chr5:43988413-43988759 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 276-517 |
| Cow position: | chr5:20108223-20108475 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 200 |
| Conread position: | 284-726 |
| Cow position: | chr5:24104138-24103684 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 111 |
| Conread position: | 310-653 |
| Cow position: | chr5:57000899-57001231 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 11, 71 |
Show alignments to all cow chromosomes.