Cow genome map
| Conread name: | Ova1-OVRM10210C04 |
| Conread position: | 1-623 |
| Cow position: | chr6:20559916-20559314 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 63 |
| Conread position: | 1-716 |
| Cow position: | chr6:1821426-1820705 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 51 |
| Conread position: | 1-726 |
| Cow position: | chr6:28490375-28489638 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 1-727 |
| Cow position: | chr6:703401-704145 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 143 |
| Conread position: | 3-317 |
| Cow position: | chr6:3276179-3275868 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 3-426 |
| Cow position: | chr6:11871459-11871042 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 3-461 |
| Cow position: | chr6:28134102-28134553 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 132 |
| Conread position: | 3-726 |
| Cow position: | chr6:21835981-21835268 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 3-727 |
| Cow position: | chr6:28703521-28702777 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 4-379 |
| Cow position: | chr6:16053300-16053675 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 4-511 |
| Cow position: | chr6:47047991-47047476 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 124 |
| Conread position: | 4-616 |
| Cow position: | chr6:3487235-3486606 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 4-664 |
| Cow position: | chr6:58065930-58066584 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 57 |
| Conread position: | 4-699 |
| Cow position: | chr6:10632740-10633429 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 4-713 |
| Cow position: | chr6:40316775-40317497 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 80 |
| Conread position: | 4-721 |
| Cow position: | chr6:26669672-26668935 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 4-726 |
| Cow position: | chr6:44262277-44261551 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 126 |
| Conread position: | 4-727 |
| Cow position: | chr6:2877494-2876751 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 124 |
| Conread position: | 4-727 |
| Cow position: | chr6:39910527-39911262 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 125 |
| Conread position: | 4-734 |
| Cow position: | chr6:28104667-28103924 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 5-719 |
| Cow position: | chr6:44149357-44148623 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 5-727 |
| Cow position: | chr6:17597119-17596362 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 156 |
| Conread position: | 6-378 |
| Cow position: | chr6:41129-40736 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 7-727 |
| Cow position: | chr6:7140147-7139407 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 9-519 |
| Cow position: | chr6:58601680-58602192 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 94 |
| Conread position: | 9-650 |
| Cow position: | chr6:15478372-15479023 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 78 |
| Conread position: | 9-729 |
| Cow position: | chr6:66546685-66547403 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 101 |
| Conread position: | 10-598 |
| Cow position: | chr6:44001870-44002471 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 14-217 |
| Cow position: | chr6:46573980-46574181 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-255 |
| Cow position: | chr6:3784970-3785209 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-284 |
| Cow position: | chr6:41190501-41190762 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 14-302 |
| Cow position: | chr6:50645981-50645695 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-335 |
| Cow position: | chr6:46603043-46602722 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-342 |
| Cow position: | chr6:28766840-28766512 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-414 |
| Cow position: | chr6:13945112-13945512 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-524 |
| Cow position: | chr6:65820770-65820253 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 14-550 |
| Cow position: | chr6:2375890-2376422 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-581 |
| Cow position: | chr6:40379431-40378848 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-721 |
| Cow position: | chr6:27170782-27171506 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr6:12665116-12664388 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr6:28187620-28186905 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr6:35875509-35874783 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 146 |
| Conread position: | 14-727 |
| Cow position: | chr6:40276288-40277017 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr6:45587151-45587867 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 15-622 |
| Cow position: | chr6:7178086-7177469 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 15-727 |
| Cow position: | chr6:47042013-47041258 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 16-726 |
| Cow position: | chr6:3571796-3572526 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 16-727 |
| Cow position: | chr6:40326619-40327351 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 17-728 |
| Cow position: | chr6:43792366-43791647 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 128 |
| Conread position: | 18-379 |
| Cow position: | chr6:47625276-47625626 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 43 |
| Conread position: | 19-237 |
| Cow position: | chr6:30677078-30676873 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 20-557 |
| Cow position: | chr6:10250398-10249853 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 21-721 |
| Cow position: | chr6:1382114-1381418 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 70 |
| Conread position: | 21-721 |
| Cow position: | chr6:35419072-35418376 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 23 |
| Conread position: | 24-284 |
| Cow position: | chr6:27471790-27472043 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 37-727 |
| Cow position: | chr6:3150460-3151161 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 41-511 |
| Cow position: | chr6:25215448-25215919 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 37 |
| Conread position: | 49-726 |
| Cow position: | chr6:12626945-12627630 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 32 |
| Conread position: | 50-720 |
| Cow position: | chr6:10339386-10338726 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 69 |
| Conread position: | 50-727 |
| Cow position: | chr6:7834737-7835401 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 39 |
| Conread position: | 53-653 |
| Cow position: | chr6:64954037-64953452 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 397 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 276, 56 |
| Conread position: | 78-695 |
| Cow position: | chr6:15926316-15925665 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 90-285 |
| Cow position: | chr6:16995678-16995867 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 91-557 |
| Cow position: | chr6:16598894-16599373 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 31, 97 |
| Conread position: | 91-721 |
| Cow position: | chr6:13848355-13848997 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 16 |
| Conread position: | 120-284 |
| Cow position: | chr6:24262609-24262769 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 137-661 |
| Cow position: | chr6:58028050-58028586 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 106 |
| Conread position: | 147-727 |
| Cow position: | chr6:5749259-5749858 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 36 |
| Conread position: | 190-707 |
| Cow position: | chr6:39374688-39375204 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 63 |
| Conread position: | 212-727 |
| Cow position: | chr6:17243904-17243366 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 225-634 |
| Cow position: | chr6:29280112-29280529 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 8 |
| Conread position: | 229-627 |
| Cow position: | chr6:18973047-18972637 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 231-587 |
| Cow position: | chr6:43573741-43574112 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 16, 84 |
| Conread position: | 246-647 |
| Cow position: | chr6:28475147-28475569 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 144 |
| Conread position: | 251-727 |
| Cow position: | chr6:57471102-57471593 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 296-727 |
| Cow position: | chr6:14390408-14390862 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 180 |
| Conread position: | 329-566 |
| Cow position: | chr6:7193657-7193401 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 59 |
Show alignments to all cow chromosomes.