Cow genome map
| Conread name: | Ova1-OVRM10210C04 |
| Conread position: | 1-320 |
| Cow position: | chr9:3168035-3168342 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 6, 114 |
| Conread position: | 1-418 |
| Cow position: | chr9:7158828-7158410 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 162 |
| Conread position: | 1-418 |
| Cow position: | chr9:32970070-32970475 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 50 |
| Conread position: | 1-519 |
| Cow position: | chr9:1637982-1638500 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 355 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 236, 43 |
| Conread position: | 1-519 |
| Cow position: | chr9:26567721-26568237 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 1-631 |
| Cow position: | chr9:35315757-35315095 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 448 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 274, 10 |
| Conread position: | 1-727 |
| Cow position: | chr9:17901446-17900716 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 154 |
| Conread position: | 1-727 |
| Cow position: | chr9:35594959-35594230 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 1-727 |
| Cow position: | chr9:44819266-44819991 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 2-639 |
| Cow position: | chr9:26083440-26082791 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 3-328 |
| Cow position: | chr9:20945189-20945518 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 3-534 |
| Cow position: | chr9:30435703-30436216 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 3-624 |
| Cow position: | chr9:63596670-63596052 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 389 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 241, 58 |
| Conread position: | 3-661 |
| Cow position: | chr9:59428128-59428794 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 13 |
| Conread position: | 3-689 |
| Cow position: | chr9:25188222-25188920 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 127 |
| Conread position: | 3-716 |
| Cow position: | chr9:20176592-20175861 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 3-721 |
| Cow position: | chr9:9562922-9562192 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 3-726 |
| Cow position: | chr9:8165754-8165031 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 11 |
| Conread position: | 3-727 |
| Cow position: | chr9:17063264-17062526 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 3-728 |
| Cow position: | chr9:22436092-22436817 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 4-270 |
| Cow position: | chr9:4836219-4835957 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 4-517 |
| Cow position: | chr9:27935499-27936020 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 4-658 |
| Cow position: | chr9:54925668-54926315 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 4-660 |
| Cow position: | chr9:20939441-20940088 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 57 |
| Conread position: | 4-726 |
| Cow position: | chr9:827986-827255 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 4-726 |
| Cow position: | chr9:46042111-46041399 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 81 |
| Conread position: | 4-727 |
| Cow position: | chr9:3309743-3310476 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 57 |
| Conread position: | 4-727 |
| Cow position: | chr9:27783310-27784046 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 122 |
| Conread position: | 4-727 |
| Cow position: | chr9:38677266-38678003 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 140 |
| Conread position: | 4-727 |
| Cow position: | chr9:44384382-44385112 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 5-327 |
| Cow position: | chr9:8776635-8776959 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 5-363 |
| Cow position: | chr9:3005121-3004767 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 5-727 |
| Cow position: | chr9:2679386-2680140 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 7-721 |
| Cow position: | chr9:28679097-28679812 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 7-727 |
| Cow position: | chr9:47043081-47043823 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 9-568 |
| Cow position: | chr9:22192406-22192977 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 12-379 |
| Cow position: | chr9:62736656-62736314 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 313, 46 |
| Conread position: | 14-288 |
| Cow position: | chr9:46859330-46859058 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-606 |
| Cow position: | chr9:25034432-25033829 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 14-661 |
| Cow position: | chr9:51211813-51212475 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr9:221391-220685 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 106 |
| Conread position: | 14-727 |
| Cow position: | chr9:1075057-1074312 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr9:1250868-1250136 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr9:9014216-9014932 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 112 |
| Conread position: | 14-727 |
| Cow position: | chr9:19158407-19157683 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 48 |
| Conread position: | 14-727 |
| Cow position: | chr9:30827869-30828603 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 105 |
| Conread position: | 14-727 |
| Cow position: | chr9:31065850-31066579 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 14-727 |
| Cow position: | chr9:50791842-50792578 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 112 |
| Conread position: | 17-418 |
| Cow position: | chr9:10937730-10938125 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 126 |
| Conread position: | 17-671 |
| Cow position: | chr9:30673510-30674180 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 113 |
| Conread position: | 21-327 |
| Cow position: | chr9:4649473-4649166 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 106 |
| Conread position: | 21-366 |
| Cow position: | chr9:26553721-26554038 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 21-429 |
| Cow position: | chr9:3727737-3728129 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 21-641 |
| Cow position: | chr9:2866834-2866210 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 23-593 |
| Cow position: | chr9:4666313-4666891 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 23-726 |
| Cow position: | chr9:42310818-42311553 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 50-640 |
| Cow position: | chr9:6977501-6978086 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 70 |
| Conread position: | 52-271 |
| Cow position: | chr9:3544052-3544269 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 71 |
| Conread position: | 52-726 |
| Cow position: | chr9:45874696-45875375 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 71 |
| Conread position: | 58-566 |
| Cow position: | chr9:50094060-50093542 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 14 |
| Conread position: | 82-700 |
| Cow position: | chr9:4717373-4717999 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 82-727 |
| Cow position: | chr9:8781708-8781065 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 20 |
| Conread position: | 82-727 |
| Cow position: | chr9:64015472-64014810 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 115-728 |
| Cow position: | chr9:9707360-9707977 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 27 |
| Conread position: | 125-410 |
| Cow position: | chr9:9211801-9211520 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 117 |
| Conread position: | 135-632 |
| Cow position: | chr9:29332502-29333020 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 136-727 |
| Cow position: | chr9:26737168-26737787 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 20 |
| Conread position: | 220-517 |
| Cow position: | chr9:10976448-10976755 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 91, 256 |
| Conread position: | 246-519 |
| Cow position: | chr9:28000880-28001166 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 246-700 |
| Cow position: | chr9:9328630-9328171 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 308 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 247-459 |
| Cow position: | chr9:35105443-35105648 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 148, 36 |
| Conread position: | 251-712 |
| Cow position: | chr9:29789324-29788845 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 299-519 |
| Cow position: | chr9:3804765-3804991 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 173 |
| Conread position: | 310-721 |
| Cow position: | chr9:59509737-59509314 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 310-727 |
| Cow position: | chr9:56303028-56302585 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 325-704 |
| Cow position: | chr9:32294915-32294520 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 327-613 |
| Cow position: | chr9:17312821-17313119 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 92, 263 |
| Conread position: | 328-727 |
| Cow position: | chr9:6709401-6709819 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 146 |
Show alignments to all cow chromosomes.