Cow genome map

Conread name: Ova1-OVRM10211B02

Conread position: 352-687
Cow position: chr1:85532019-85531669 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 247
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 59, 109

Conread position: 360-734
Cow position: chr1:90607529-90607143 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 368

Conread position: 361-746
Cow position: chr1:67833780-67833388 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 5

Conread position: 364-744
Cow position: chr1:40511670-40511277 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 364-746
Cow position: chr1:3384599-3384192 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 135

Conread position: 364-746
Cow position: chr1:29363648-29364043 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 364-746
Cow position: chr1:57135785-57136155 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 255
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 208, 58

Conread position: 364-746
Cow position: chr1:79635634-79635251 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 365-736
Cow position: chr1:89733148-89732784 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 251
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 51, 5

Conread position: 365-746
Cow position: chr1:26517534-26517141 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 10

Conread position: 365-746
Cow position: chr1:31364744-31364355 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 140

Conread position: 365-746
Cow position: chr1:33713426-33713829 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 5

Conread position: 365-746
Cow position: chr1:81862627-81862238 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 11

Conread position: 370-687
Cow position: chr1:99018649-99018338 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 43, 135

Conread position: 370-746
Cow position: chr1:21116482-21116088 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 281

Conread position: 375-722
Cow position: chr1:25551329-25551687 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 352

Conread position: 375-736
Cow position: chr1:33552293-33552667 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 353

Conread position: 375-736
Cow position: chr1:50248335-50247972 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 180

Conread position: 375-736
Cow position: chr1:57364979-57364610 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 84

Conread position: 375-736
Cow position: chr1:68606184-68605809 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 375-741
Cow position: chr1:56142980-56142601 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 353

Conread position: 375-741
Cow position: chr1:62243289-62242910 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 353

Conread position: 375-741
Cow position: chr1:88132140-88132519 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 353

Conread position: 375-742
Cow position: chr1:49972805-49972429 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 136

Conread position: 375-743
Cow position: chr1:17940406-17940026 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 368

Conread position: 375-743
Cow position: chr1:38417498-38417868 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 218

Conread position: 375-745
Cow position: chr1:82654025-82654404 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 93

Conread position: 375-746
Cow position: chr1:5503332-5503712 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 105

Conread position: 375-746
Cow position: chr1:8826419-8826802 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 108

Conread position: 375-746
Cow position: chr1:10723946-10724327 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 209

Conread position: 375-746
Cow position: chr1:17011371-17010990 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 210

Conread position: 375-746
Cow position: chr1:18026395-18025997 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 375-746
Cow position: chr1:18240859-18240485 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 29

Conread position: 375-746
Cow position: chr1:22619290-22618925 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 99

Conread position: 375-746
Cow position: chr1:26584464-26584847 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 302

Conread position: 375-746
Cow position: chr1:29035667-29036044 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 94

Conread position: 375-746
Cow position: chr1:30074239-30074616 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 346

Conread position: 375-746
Cow position: chr1:33897624-33898008 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 375-746
Cow position: chr1:50210478-50210094 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 375-746
Cow position: chr1:53199909-53200292 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 288

Conread position: 375-746
Cow position: chr1:55320708-55320336 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 130

Conread position: 375-746
Cow position: chr1:55777953-55778334 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 302

Conread position: 375-746
Cow position: chr1:56724515-56724892 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 343

Conread position: 375-746
Cow position: chr1:57423468-57423084 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 375-746
Cow position: chr1:62804807-62804428 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 346

Conread position: 375-746
Cow position: chr1:63604407-63604022 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 353

Conread position: 375-746
Cow position: chr1:65387680-65388060 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 136

Conread position: 375-746
Cow position: chr1:67002522-67002901 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 138

Conread position: 375-746
Cow position: chr1:69767944-69768327 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 366

Conread position: 375-746
Cow position: chr1:72082140-72082504 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 85

Conread position: 375-746
Cow position: chr1:72185516-72185133 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 353

Conread position: 375-746
Cow position: chr1:73069698-73069312 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 305

Conread position: 375-746
Cow position: chr1:77923072-77923456 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 375-746
Cow position: chr1:79455589-79455205 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 353

Conread position: 375-746
Cow position: chr1:80357810-80357422 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 375-746
Cow position: chr1:81777791-81778193 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 285
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 48, 146

Conread position: 375-746
Cow position: chr1:82477340-82477724 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 375-746
Cow position: chr1:86546772-86546389 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 375-746
Cow position: chr1:91900390-91900770 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 93

Conread position: 375-746
Cow position: chr1:99914793-99915183 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 327

Conread position: 376-738
Cow position: chr1:93855884-93856252 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 206

Conread position: 376-746
Cow position: chr1:24652639-24653012 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 377-746
Cow position: chr1:82922788-82922415 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 91

Conread position: 378-693
Cow position: chr1:77115300-77114968 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 87

Conread position: 380-743
Cow position: chr1:32566554-32566186 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 206

Conread position: 380-746
Cow position: chr1:24442992-24442613 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 387-746
Cow position: chr1:89769161-89768793 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 113

Conread position: 394-746
Cow position: chr1:12060812-12060460 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 10

Conread position: 415-742
Cow position: chr1:9259899-9260229 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 415-742
Cow position: chr1:82565527-82565857 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 300

Conread position: 415-743
Cow position: chr1:39545201-39545532 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 415-746
Cow position: chr1:9379103-9378770 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 102

Conread position: 415-746
Cow position: chr1:20830309-20830643 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 415-746
Cow position: chr1:21088846-21089179 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 106

Conread position: 415-746
Cow position: chr1:33852683-33853017 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 415-746
Cow position: chr1:86508495-86508147 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 417-740
Cow position: chr1:46837043-46837366 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 184

Conread position: 418-716
Cow position: chr1:56164953-56165254 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 108

Conread position: 419-746
Cow position: chr1:59207661-59207331 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 419-746
Cow position: chr1:71561327-71560997 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 434-746
Cow position: chr1:1828870-1828562 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 9

Conread position: 463-746
Cow position: chr1:21592052-21592337 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 131

Conread position: 476-746
Cow position: chr1:18964894-18964621 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 538-708
Cow position: chr1:65021264-65021094 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 542-743
Cow position: chr1:40966873-40966672 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 568-746
Cow position: chr1:62921129-62921307 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 602-746
Cow position: chr1:101012580-101012436 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 121
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 605-746
Cow position: chr1:98617182-98617041 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 98, 93

Conread position: 617-746
Cow position: chr1:87435865-87435994 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 623-746
Cow position: chr1:5355311-5355188 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 627-746
Cow position: chr1:38476937-38477056 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.