Cow genome map

Conread name: Ova1-OVRM10211B02

Conread position: 364-608
Cow position: chr11:44252818-44253075 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 50, 92

Conread position: 364-630
Cow position: chr11:32685905-32686175 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 50, 179

Conread position: 364-734
Cow position: chr11:19101478-19101096 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 164

Conread position: 364-737
Cow position: chr11:30122830-30122452 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 257

Conread position: 364-746
Cow position: chr11:17547178-17547567 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 149

Conread position: 364-746
Cow position: chr11:44517849-44517456 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 205

Conread position: 365-746
Cow position: chr11:49039360-49038971 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 5

Conread position: 370-589
Cow position: chr11:54216237-54216007 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 45, 135

Conread position: 370-638
Cow position: chr11:2833349-2833609 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 41, 136

Conread position: 375-554
Cow position: chr11:4269375-4269183 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 40, 0

Conread position: 375-585
Cow position: chr11:28053616-28053393 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 179
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 40, 0

Conread position: 375-585
Cow position: chr11:44156222-44156013 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 39

Conread position: 375-637
Cow position: chr11:76372971-76372704 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 185

Conread position: 375-640
Cow position: chr11:20511643-20511908 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 168
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 123

Conread position: 375-664
Cow position: chr11:1495007-1494716 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 186

Conread position: 375-736
Cow position: chr11:41169670-41169296 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 352

Conread position: 375-741
Cow position: chr11:71330621-71331004 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 357

Conread position: 375-743
Cow position: chr11:11989159-11989536 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 130

Conread position: 375-744
Cow position: chr11:1489142-1488764 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 152

Conread position: 375-744
Cow position: chr11:17106656-17106274 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 375-745
Cow position: chr11:26073941-26073561 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 291

Conread position: 375-746
Cow position: chr11:2727758-2728129 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 263
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 43, 77

Conread position: 375-746
Cow position: chr11:3494015-3494399 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 375-746
Cow position: chr11:4026582-4026202 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 136

Conread position: 375-746
Cow position: chr11:4062860-4062502 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 83

Conread position: 375-746
Cow position: chr11:9156124-9155748 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 285

Conread position: 375-746
Cow position: chr11:10848478-10848860 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 212

Conread position: 375-746
Cow position: chr11:12357385-12356992 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 375-746
Cow position: chr11:19063046-19062667 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 93

Conread position: 375-746
Cow position: chr11:20506267-20506662 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 127

Conread position: 375-746
Cow position: chr11:20733212-20732824 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 375-746
Cow position: chr11:23249444-23249060 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 336

Conread position: 375-746
Cow position: chr11:23881057-23881431 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 139

Conread position: 375-746
Cow position: chr11:30253260-30253633 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 92

Conread position: 375-746
Cow position: chr11:32452854-32453241 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 375-746
Cow position: chr11:52420429-52420801 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 178

Conread position: 375-746
Cow position: chr11:58135420-58135797 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 273

Conread position: 375-746
Cow position: chr11:63654308-63653924 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 375-746
Cow position: chr11:66730112-66730496 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 130

Conread position: 375-746
Cow position: chr11:67154711-67155087 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 172

Conread position: 375-746
Cow position: chr11:67451519-67451902 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 349

Conread position: 375-746
Cow position: chr11:67845544-67845162 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 113

Conread position: 375-746
Cow position: chr11:87142605-87142991 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 353

Conread position: 377-746
Cow position: chr11:26548553-26548938 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 275

Conread position: 377-746
Cow position: chr11:44582314-44581933 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 350

Conread position: 377-746
Cow position: chr11:72310010-72309630 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 211

Conread position: 378-746
Cow position: chr11:35894877-35894496 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 130

Conread position: 378-746
Cow position: chr11:73462112-73461730 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 42, 181

Conread position: 380-746
Cow position: chr11:31927184-31927565 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 183

Conread position: 398-746
Cow position: chr11:53430969-53430625 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 9

Conread position: 409-746
Cow position: chr11:26069976-26069632 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 415-722
Cow position: chr11:44049597-44049906 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 199
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 129, 172

Conread position: 415-745
Cow position: chr11:47759204-47758870 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 140

Conread position: 415-746
Cow position: chr11:9733601-9733273 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 85

Conread position: 415-746
Cow position: chr11:21475201-21475530 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 59

Conread position: 415-746
Cow position: chr11:27657509-27657847 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 76

Conread position: 415-746
Cow position: chr11:28228692-28228358 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 415-746
Cow position: chr11:50836592-50836258 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 418-746
Cow position: chr11:47738461-47738138 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 217

Conread position: 425-743
Cow position: chr11:17119258-17118936 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 432-746
Cow position: chr11:15986344-15986652 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 152

Conread position: 450-746
Cow position: chr11:73134414-73134712 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 158

Conread position: 489-741
Cow position: chr11:41234164-41234419 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 226

Conread position: 491-746
Cow position: chr11:10956974-10957225 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 145
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 9, 19

Conread position: 498-746
Cow position: chr11:86876725-86876474 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 217

Conread position: 513-746
Cow position: chr11:31863258-31863496 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 0

Conread position: 513-746
Cow position: chr11:37802238-37802472 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 25, 76

Conread position: 595-746
Cow position: chr11:40405794-40405643 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 624-746
Cow position: chr11:47728404-47728282 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.