Cow genome map
| Conread name: | Ova1-OVRM10211B02 |
| Conread position: | 363-746 |
| Cow position: | chr5:53945973-53946357 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 101 |
| Conread position: | 365-745 |
| Cow position: | chr5:41527658-41527271 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 365-746 |
| Cow position: | chr5:3502973-3502579 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 365-746 |
| Cow position: | chr5:11115615-11115246 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 57, 5 |
| Conread position: | 365-746 |
| Cow position: | chr5:45701449-45701845 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 375-600 |
| Cow position: | chr5:34697745-34697979 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 375-615 |
| Cow position: | chr5:54791488-54791236 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 209 |
| Conread position: | 375-636 |
| Cow position: | chr5:40923502-40923238 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 136 |
| Conread position: | 375-658 |
| Cow position: | chr5:51308708-51308428 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 375-669 |
| Cow position: | chr5:32952042-32952345 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 375-713 |
| Cow position: | chr5:28014180-28014524 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 215 |
| Conread position: | 375-715 |
| Cow position: | chr5:61081070-61080712 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 288 |
| Conread position: | 375-730 |
| Cow position: | chr5:1340886-1340534 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 127 |
| Conread position: | 375-734 |
| Cow position: | chr5:18560262-18559891 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 375-734 |
| Cow position: | chr5:37733493-37733865 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 353 |
| Conread position: | 375-736 |
| Cow position: | chr5:52434884-52435254 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 375-738 |
| Cow position: | chr5:46737445-46737074 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 375-745 |
| Cow position: | chr5:14784226-14783843 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 375-746 |
| Cow position: | chr5:4018054-4017686 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 261 |
| Conread position: | 375-746 |
| Cow position: | chr5:4070365-4070744 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 122 |
| Conread position: | 375-746 |
| Cow position: | chr5:6153755-6153370 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 354 |
| Conread position: | 375-746 |
| Cow position: | chr5:10775119-10774735 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 350 |
| Conread position: | 375-746 |
| Cow position: | chr5:10813606-10813222 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 350 |
| Conread position: | 375-746 |
| Cow position: | chr5:10842237-10841852 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 353 |
| Conread position: | 375-746 |
| Cow position: | chr5:10855673-10855290 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 274 |
| Conread position: | 375-746 |
| Cow position: | chr5:10919984-10920363 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 375-746 |
| Cow position: | chr5:12731570-12731187 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 160 |
| Conread position: | 375-746 |
| Cow position: | chr5:13046801-13047166 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 375-746 |
| Cow position: | chr5:23959185-23958802 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 85 |
| Conread position: | 375-746 |
| Cow position: | chr5:24099805-24100177 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 375-746 |
| Cow position: | chr5:30580488-30580863 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 235 |
| Conread position: | 375-746 |
| Cow position: | chr5:31100284-31099908 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 138 |
| Conread position: | 375-746 |
| Cow position: | chr5:34190060-34190450 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 129 |
| Conread position: | 375-746 |
| Cow position: | chr5:35301243-35301626 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 375-746 |
| Cow position: | chr5:41960599-41960229 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 284 |
| Conread position: | 375-746 |
| Cow position: | chr5:46669080-46669461 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 375-746 |
| Cow position: | chr5:46777538-46777921 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 375-746 |
| Cow position: | chr5:48807588-48807204 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 375-746 |
| Cow position: | chr5:50870763-50871135 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 375-746 |
| Cow position: | chr5:55629138-55629511 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 137 |
| Conread position: | 375-746 |
| Cow position: | chr5:57481396-57481011 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 354 |
| Conread position: | 375-746 |
| Cow position: | chr5:58197162-58197544 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 375-746 |
| Cow position: | chr5:59061782-59062164 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 141 |
| Conread position: | 375-746 |
| Cow position: | chr5:64780871-64780486 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 354 |
| Conread position: | 376-746 |
| Cow position: | chr5:46646100-46646504 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 286 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 378-668 |
| Cow position: | chr5:32281622-32281328 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 378-692 |
| Cow position: | chr5:45883825-45883513 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 74 |
| Conread position: | 378-746 |
| Cow position: | chr5:49757554-49757181 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 415-738 |
| Cow position: | chr5:46808507-46808823 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 50 |
| Conread position: | 415-746 |
| Cow position: | chr5:4756989-4756655 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 415-746 |
| Cow position: | chr5:5104416-5104743 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 88 |
| Conread position: | 415-746 |
| Cow position: | chr5:18121288-18120954 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 415-746 |
| Cow position: | chr5:31707757-31708091 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 300 |
| Conread position: | 415-746 |
| Cow position: | chr5:32773959-32774293 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 434-722 |
| Cow position: | chr5:2459196-2459485 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 219 |
| Conread position: | 438-745 |
| Cow position: | chr5:41376637-41376327 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 441-742 |
| Cow position: | chr5:4684584-4684281 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 149 |
| Conread position: | 466-746 |
| Cow position: | chr5:40131358-40131074 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 250 |
| Conread position: | 467-746 |
| Cow position: | chr5:307167-306886 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 145 |
| Conread position: | 473-741 |
| Cow position: | chr5:23831069-23830798 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 184 |
| Conread position: | 488-746 |
| Cow position: | chr5:51744549-51744803 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 56 |
| Conread position: | 490-746 |
| Cow position: | chr5:12681774-12681522 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 35 |
| Conread position: | 511-746 |
| Cow position: | chr5:37378416-37378654 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 547-746 |
| Cow position: | chr5:20108230-20108429 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 595-746 |
| Cow position: | chr5:12642058-12641905 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 606-746 |
| Cow position: | chr5:58191374-58191232 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 132, 0 |
Show alignments to all cow chromosomes.