Cow genome map
| Conread name: | Ova1-OVRM10211B02 |
| Conread position: | 364-687 |
| Cow position: | chr6:36518342-36518663 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 364-735 |
| Cow position: | chr6:47625333-47625716 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 364-746 |
| Cow position: | chr6:10250334-10249942 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 364-746 |
| Cow position: | chr6:39910609-39910997 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 157 |
| Conread position: | 364-746 |
| Cow position: | chr6:41228715-41229109 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 173 |
| Conread position: | 364-746 |
| Cow position: | chr6:59617386-59617756 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 364-746 |
| Cow position: | chr6:66233077-66233465 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 140 |
| Conread position: | 365-746 |
| Cow position: | chr6:7140067-7139675 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 365-746 |
| Cow position: | chr6:15139901-15139508 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 365-746 |
| Cow position: | chr6:27528722-27528354 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 5 |
| Conread position: | 365-746 |
| Cow position: | chr6:43792296-43791903 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 365-746 |
| Cow position: | chr6:44262194-44261814 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 375-539 |
| Cow position: | chr6:64717307-64717478 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 40, 129 |
| Conread position: | 375-540 |
| Cow position: | chr6:34196659-34196836 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 375-583 |
| Cow position: | chr6:3276086-3275867 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 40, 212 |
| Conread position: | 375-729 |
| Cow position: | chr6:11871373-11871006 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 350 |
| Conread position: | 375-734 |
| Cow position: | chr6:55541974-55541602 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 351 |
| Conread position: | 375-738 |
| Cow position: | chr6:25215499-25215875 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 353 |
| Conread position: | 375-741 |
| Cow position: | chr6:8203474-8203850 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 375-741 |
| Cow position: | chr6:16591257-16591617 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 375-742 |
| Cow position: | chr6:28170187-28170570 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 198 |
| Conread position: | 375-742 |
| Cow position: | chr6:43619005-43619385 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 375-743 |
| Cow position: | chr6:1535291-1534918 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 127 |
| Conread position: | 375-743 |
| Cow position: | chr6:3888221-3887855 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 375-743 |
| Cow position: | chr6:10645007-10645381 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 375-745 |
| Cow position: | chr6:17597027-17596631 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 375-746 |
| Cow position: | chr6:914917-915296 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 130 |
| Conread position: | 375-746 |
| Cow position: | chr6:5948498-5948114 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 375-746 |
| Cow position: | chr6:8760014-8759632 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 375-746 |
| Cow position: | chr6:10339341-10338976 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 83 |
| Conread position: | 375-746 |
| Cow position: | chr6:25792474-25792092 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 352 |
| Conread position: | 375-746 |
| Cow position: | chr6:27170864-27171246 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 348 |
| Conread position: | 375-746 |
| Cow position: | chr6:28187538-28187173 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 229 |
| Conread position: | 375-746 |
| Cow position: | chr6:28490283-28489904 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 99 |
| Conread position: | 375-746 |
| Cow position: | chr6:30273612-30273228 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 353 |
| Conread position: | 375-746 |
| Cow position: | chr6:34890841-34890461 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 249 |
| Conread position: | 375-746 |
| Cow position: | chr6:35875423-35875045 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 93 |
| Conread position: | 375-746 |
| Cow position: | chr6:40276370-40276748 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 375-746 |
| Cow position: | chr6:40379349-40378966 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 353 |
| Conread position: | 375-746 |
| Cow position: | chr6:40553290-40552916 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 375-746 |
| Cow position: | chr6:40866039-40865661 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 270 |
| Conread position: | 375-746 |
| Cow position: | chr6:44149266-44148883 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 217 |
| Conread position: | 375-746 |
| Cow position: | chr6:45587233-45587613 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 235 |
| Conread position: | 375-746 |
| Cow position: | chr6:47047899-47047515 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 350 |
| Conread position: | 375-746 |
| Cow position: | chr6:50636154-50636536 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 158 |
| Conread position: | 375-746 |
| Cow position: | chr6:65842897-65843281 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 352 |
| Conread position: | 376-746 |
| Cow position: | chr6:10610155-10610512 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 34 |
| Conread position: | 376-746 |
| Cow position: | chr6:44001956-44002337 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 377-746 |
| Cow position: | chr6:12626984-12627364 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 283 |
| Conread position: | 384-746 |
| Cow position: | chr6:3571885-3572260 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 121 |
| Conread position: | 386-746 |
| Cow position: | chr6:58601774-58602144 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 129 |
| Conread position: | 404-746 |
| Cow position: | chr6:184221-183877 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 407-746 |
| Cow position: | chr6:13310055-13309713 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 308 |
| Conread position: | 414-746 |
| Cow position: | chr6:13848402-13848732 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 107 |
| Conread position: | 415-736 |
| Cow position: | chr6:47041877-47041554 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 164 |
| Conread position: | 415-740 |
| Cow position: | chr6:2877352-2877024 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 300 |
| Conread position: | 415-742 |
| Cow position: | chr6:40326749-40327080 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 301 |
| Conread position: | 415-746 |
| Cow position: | chr6:330132-329800 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 243 |
| Conread position: | 415-746 |
| Cow position: | chr6:3150566-3150901 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 415-746 |
| Cow position: | chr6:5749256-5749590 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 300 |
| Conread position: | 415-746 |
| Cow position: | chr6:26669530-26669197 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 202 |
| Conread position: | 415-746 |
| Cow position: | chr6:58460987-58460656 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 138 |
| Conread position: | 415-746 |
| Cow position: | chr6:65820638-65820305 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 417-746 |
| Cow position: | chr6:28703376-28703044 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 298 |
| Conread position: | 418-746 |
| Cow position: | chr6:38272904-38273234 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 86 |
| Conread position: | 473-746 |
| Cow position: | chr6:65907398-65907122 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 170 |
| Conread position: | 491-746 |
| Cow position: | chr6:58028134-58028392 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 131 |
| Conread position: | 491-746 |
| Cow position: | chr6:64717727-64717987 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 495-746 |
| Cow position: | chr6:18973046-18972798 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 503-746 |
| Cow position: | chr6:57471089-57471333 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 558-746 |
| Cow position: | chr6:27473907-27474095 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 166, 156 |
| Conread position: | 560-746 |
| Cow position: | chr6:14390408-14390594 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 594-736 |
| Cow position: | chr6:3275630-3275488 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 130, 124 |
| Conread position: | 594-746 |
| Cow position: | chr6:17047854-17048006 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 130, 120 |
| Conread position: | 605-746 |
| Cow position: | chr6:50111342-50111484 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 614-746 |
| Cow position: | chr6:34136605-34136473 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 624-746 |
| Cow position: | chr6:12380775-12380897 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.