Cow genome map

Conread name: Ova1-OVRM10212D05

Conread position: 1-137
Cow position: chr11:82940718-82940860 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 1-169
Cow position: chr11:79728765-79728948 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 0

Conread position: 1-290
Cow position: chr11:4474571-4474869 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 67

Conread position: 2-172
Cow position: chr11:32378090-32377910 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 2-172
Cow position: chr11:51687822-51688003 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 2-240
Cow position: chr11:53130714-53130470 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 158

Conread position: 3-303
Cow position: chr11:55117384-55117067 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 210

Conread position: 4-134
Cow position: chr11:26144195-26144324 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 74

Conread position: 4-138
Cow position: chr11:26117819-26117960 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 4-152
Cow position: chr11:77128559-77128411 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 13, 35

Conread position: 4-163
Cow position: chr11:34032301-34032464 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 138
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 14, 146

Conread position: 4-168
Cow position: chr11:8105683-8105509 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 144
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 14, 0

Conread position: 4-170
Cow position: chr11:48232634-48232467 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 141
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 14, 87

Conread position: 4-170
Cow position: chr11:62155527-62155355 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 146
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 98

Conread position: 4-176
Cow position: chr11:35149064-35148887 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 138

Conread position: 4-176
Cow position: chr11:44222791-44222617 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 14, 36

Conread position: 4-176
Cow position: chr11:62965651-62965835 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 4-176
Cow position: chr11:67804653-67804471 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 144

Conread position: 4-177
Cow position: chr11:8147998-8148174 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 81, 17

Conread position: 4-177
Cow position: chr11:18244037-18244224 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 92

Conread position: 4-177
Cow position: chr11:37347380-37347193 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 16, 122

Conread position: 4-177
Cow position: chr11:49934836-49935024 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 181

Conread position: 4-177
Cow position: chr11:60470278-60470462 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 97

Conread position: 4-177
Cow position: chr11:83066395-83066213 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 14, 36

Conread position: 4-184
Cow position: chr11:8988328-8988519 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 35

Conread position: 4-189
Cow position: chr11:18572702-18572509 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 36

Conread position: 4-192
Cow position: chr11:87155420-87155215 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 128

Conread position: 4-195
Cow position: chr11:41983552-41983746 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 29

Conread position: 4-201
Cow position: chr11:70273206-70272997 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 17, 161

Conread position: 4-204
Cow position: chr11:80530269-80530061 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 13, 0

Conread position: 4-210
Cow position: chr11:78381154-78381359 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 171
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 69, 153

Conread position: 4-212
Cow position: chr11:60302058-60302275 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 12, 35

Conread position: 4-218
Cow position: chr11:30120765-30120986 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 12, 35

Conread position: 4-218
Cow position: chr11:68909949-68910176 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 185
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 14, 204

Conread position: 4-222
Cow position: chr11:43914114-43913895 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 138

Conread position: 4-227
Cow position: chr11:86926026-86926254 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 152

Conread position: 4-229
Cow position: chr11:70609687-70609456 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 193

Conread position: 4-230
Cow position: chr11:4436227-4435985 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 4-239
Cow position: chr11:58600765-58600519 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 14, 135

Conread position: 4-246
Cow position: chr11:64638628-64638874 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 183

Conread position: 4-251
Cow position: chr11:42016732-42016990 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 13, 200

Conread position: 4-254
Cow position: chr11:30879584-30879318 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 4-268
Cow position: chr11:10095246-10094969 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 13

Conread position: 4-270
Cow position: chr11:6594348-6594623 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 13, 146

Conread position: 4-271
Cow position: chr11:5031873-5032153 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 155

Conread position: 4-271
Cow position: chr11:47586447-47586723 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 214

Conread position: 4-272
Cow position: chr11:49152852-49152563 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 59, 96

Conread position: 4-284
Cow position: chr11:58990410-58990123 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 279

Conread position: 4-288
Cow position: chr11:42793072-42793350 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 222
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 36

Conread position: 4-289
Cow position: chr11:31885419-31885120 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 230
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 15, 208

Conread position: 4-289
Cow position: chr11:35363399-35363104 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 160

Conread position: 4-289
Cow position: chr11:44636857-44637153 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 26

Conread position: 4-289
Cow position: chr11:53778516-53778224 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 202

Conread position: 4-289
Cow position: chr11:61846099-61846398 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 17, 286

Conread position: 4-290
Cow position: chr11:41239370-41239665 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 149

Conread position: 4-292
Cow position: chr11:47125462-47125176 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 168

Conread position: 4-292
Cow position: chr11:81174791-81174495 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 157

Conread position: 4-303
Cow position: chr11:7874048-7873755 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 66

Conread position: 4-303
Cow position: chr11:75480127-75480441 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 287

Conread position: 4-303
Cow position: chr11:81066684-81066988 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 276

Conread position: 4-308
Cow position: chr11:16251346-16251666 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 5-218
Cow position: chr11:51144617-51144394 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 12, 35

Conread position: 5-289
Cow position: chr11:21798844-21798563 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 149

Conread position: 6-186
Cow position: chr11:17036651-17036844 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 149

Conread position: 6-290
Cow position: chr11:44642388-44642674 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 27

Conread position: 7-168
Cow position: chr11:57062941-57062780 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 11, 58

Conread position: 7-172
Cow position: chr11:75748331-75748158 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 139
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 62, 152

Conread position: 7-173
Cow position: chr11:58102873-58103053 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 7-176
Cow position: chr11:3282949-3282777 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 33

Conread position: 7-180
Cow position: chr11:48474601-48474423 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 148
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 11, 108

Conread position: 7-215
Cow position: chr11:36848825-36848622 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 10, 135

Conread position: 7-253
Cow position: chr11:37068411-37068662 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 132

Conread position: 7-267
Cow position: chr11:986831-986574 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 9, 161

Conread position: 7-292
Cow position: chr11:73512533-73512814 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 94

Conread position: 7-303
Cow position: chr11:32043587-32043889 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 49, 205

Conread position: 8-252
Cow position: chr11:26483611-26483364 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 142

Conread position: 9-161
Cow position: chr11:30596883-30596730 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 9-234
Cow position: chr11:41809578-41809816 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 9, 155

Conread position: 9-289
Cow position: chr11:18509123-18509401 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 35

Conread position: 9-289
Cow position: chr11:64029361-64029648 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 151

Conread position: 10-287
Cow position: chr11:27386447-27386730 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 149

Conread position: 15-159
Cow position: chr11:63482537-63482690 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 15-205
Cow position: chr11:6091770-6091961 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 158, 24

Conread position: 15-272
Cow position: chr11:10800778-10800511 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 52

Conread position: 19-284
Cow position: chr11:34467482-34467223 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 49, 20

Conread position: 24-292
Cow position: chr11:18066964-18067237 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 34, 78

Conread position: 25-321
Cow position: chr11:13690419-13690719 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 51, 19

Conread position: 32-268
Cow position: chr11:4060179-4060404 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 112, 135

Show alignments to all cow chromosomes.