Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-176 |
| Cow position: | chr12:25456002-25455813 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-289 |
| Cow position: | chr12:35218522-35218813 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 158 |
| Conread position: | 2-304 |
| Cow position: | chr12:4371112-4370805 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 16, 155 |
| Conread position: | 4-137 |
| Cow position: | chr12:29161933-29162073 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-150 |
| Cow position: | chr12:8710706-8710556 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-162 |
| Cow position: | chr12:37732904-37733064 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 4-165 |
| Cow position: | chr12:4134551-4134375 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 162 |
| Conread position: | 4-176 |
| Cow position: | chr12:6687742-6687568 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 4-181 |
| Cow position: | chr12:8943338-8943526 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 4-182 |
| Cow position: | chr12:44517856-44518046 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 123 |
| Conread position: | 4-185 |
| Cow position: | chr12:18518547-18518361 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 4-187 |
| Cow position: | chr12:43783277-43783451 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 4-197 |
| Cow position: | chr12:9229602-9229806 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 4-250 |
| Cow position: | chr12:40910409-40910665 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-263 |
| Cow position: | chr12:8868997-8869288 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-287 |
| Cow position: | chr12:19420049-19420341 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 123 |
| Conread position: | 4-289 |
| Cow position: | chr12:29969460-29969167 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 165 |
| Conread position: | 4-290 |
| Cow position: | chr12:31429690-31429973 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-292 |
| Cow position: | chr12:3039386-3039100 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 4-292 |
| Cow position: | chr12:7000724-7001019 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 4-292 |
| Cow position: | chr12:7977923-7977638 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 4-292 |
| Cow position: | chr12:29484011-29484302 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-296 |
| Cow position: | chr12:7919928-7919645 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 4-303 |
| Cow position: | chr12:19039730-19040043 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 4-303 |
| Cow position: | chr12:34385633-34385926 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 213 |
| Conread position: | 4-312 |
| Cow position: | chr12:40158358-40158669 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 152 |
| Conread position: | 4-314 |
| Cow position: | chr12:26868914-26869232 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 5-164 |
| Cow position: | chr12:40110265-40110100 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 5-289 |
| Cow position: | chr12:11836112-11835835 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 6-254 |
| Cow position: | chr12:5707993-5707733 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 7-174 |
| Cow position: | chr12:36954497-36954674 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 7-175 |
| Cow position: | chr12:23154583-23154766 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 11, 159 |
| Conread position: | 7-181 |
| Cow position: | chr12:2670141-2669971 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 7-206 |
| Cow position: | chr12:44905526-44905306 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 165 |
| Conread position: | 7-289 |
| Cow position: | chr12:5800912-5800620 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 146 |
| Conread position: | 7-292 |
| Cow position: | chr12:30919294-30919021 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 8-239 |
| Cow position: | chr12:15938390-15938628 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 190 |
| Conread position: | 9-162 |
| Cow position: | chr12:37728015-37727860 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 9-187 |
| Cow position: | chr12:17495316-17495504 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 9-292 |
| Cow position: | chr12:42602361-42602651 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 154 |
| Conread position: | 15-217 |
| Cow position: | chr12:18572510-18572295 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 15-254 |
| Cow position: | chr12:6226782-6227010 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 16-303 |
| Cow position: | chr12:3579151-3578857 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 22-234 |
| Cow position: | chr12:18937253-18937030 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 200 |
| Conread position: | 25-165 |
| Cow position: | chr12:43551431-43551574 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 25-229 |
| Cow position: | chr12:27038906-27039117 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 92 |
| Conread position: | 25-292 |
| Cow position: | chr12:44273993-44274259 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 167 |
| Conread position: | 26-304 |
| Cow position: | chr12:37514381-37514657 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 249 |
Show alignments to all cow chromosomes.