Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-148 |
| Cow position: | chr13:18491665-18491814 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 17, 115 |
| Conread position: | 1-181 |
| Cow position: | chr13:26261735-26261541 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-226 |
| Cow position: | chr13:8824333-8824563 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 17, 227 |
| Conread position: | 2-271 |
| Cow position: | chr13:23270147-23269870 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 2-303 |
| Cow position: | chr13:20570791-20571099 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 130 |
| Conread position: | 3-203 |
| Cow position: | chr13:45725961-45726154 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 3-289 |
| Cow position: | chr13:6945436-6945732 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 4-127 |
| Cow position: | chr13:23512433-23512558 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-128 |
| Cow position: | chr13:52749412-52749288 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 4-148 |
| Cow position: | chr13:5263221-5263066 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 4-148 |
| Cow position: | chr13:54344838-54344996 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 4-153 |
| Cow position: | chr13:33054329-33054170 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 4-160 |
| Cow position: | chr13:54093811-54093972 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 4-168 |
| Cow position: | chr13:20041901-20041717 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-170 |
| Cow position: | chr13:7076324-7076498 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 4-181 |
| Cow position: | chr13:54094880-54095057 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 4-186 |
| Cow position: | chr13:11096241-11096427 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 63 |
| Conread position: | 4-197 |
| Cow position: | chr13:18166800-18166999 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 162 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-203 |
| Cow position: | chr13:18243928-18244129 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 183 |
| Conread position: | 4-204 |
| Cow position: | chr13:6079352-6079143 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 4-229 |
| Cow position: | chr13:60974149-60974376 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 4-230 |
| Cow position: | chr13:9142357-9142584 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 4-243 |
| Cow position: | chr13:25261744-25261477 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 221 |
| Conread position: | 4-250 |
| Cow position: | chr13:33517856-33517586 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 4-252 |
| Cow position: | chr13:24753947-24754208 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-254 |
| Cow position: | chr13:17622348-17622610 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-266 |
| Cow position: | chr13:16247724-16247984 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 4-272 |
| Cow position: | chr13:41253689-41253970 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 4-289 |
| Cow position: | chr13:14717270-14716976 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 81, 66 |
| Conread position: | 4-289 |
| Cow position: | chr13:21275922-21276215 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 280 |
| Conread position: | 4-289 |
| Cow position: | chr13:36771353-36771063 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 4-289 |
| Cow position: | chr13:52585955-52585666 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 4-289 |
| Cow position: | chr13:60690660-60690360 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 287 |
| Conread position: | 4-290 |
| Cow position: | chr13:21107205-21107490 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-292 |
| Cow position: | chr13:6974227-6974527 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 95 |
| Conread position: | 4-292 |
| Cow position: | chr13:31813938-31814227 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-292 |
| Cow position: | chr13:37517070-37516775 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 264 |
| Conread position: | 4-292 |
| Cow position: | chr13:38562008-38562306 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 138 |
| Conread position: | 4-293 |
| Cow position: | chr13:12546844-12546542 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 13, 154 |
| Conread position: | 4-300 |
| Cow position: | chr13:12875906-12875612 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 4-301 |
| Cow position: | chr13:20378269-20377969 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 4-302 |
| Cow position: | chr13:15162591-15162300 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 4-303 |
| Cow position: | chr13:2414095-2414397 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 153 |
| Conread position: | 4-303 |
| Cow position: | chr13:49805037-49805340 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 160 |
| Conread position: | 4-303 |
| Cow position: | chr13:52894208-52894500 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 14, 157 |
| Conread position: | 4-303 |
| Cow position: | chr13:60430008-60429709 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 4-304 |
| Cow position: | chr13:46985086-46985390 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 4-324 |
| Cow position: | chr13:6153716-6153383 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 287 |
| Conread position: | 5-249 |
| Cow position: | chr13:11260336-11260571 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 6-304 |
| Cow position: | chr13:11834406-11834108 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 7-187 |
| Cow position: | chr13:27017313-27017131 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 7-221 |
| Cow position: | chr13:23167027-23166804 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 11, 153 |
| Conread position: | 7-251 |
| Cow position: | chr13:5091596-5091339 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 216 |
| Conread position: | 7-292 |
| Cow position: | chr13:51940806-51941091 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 7-314 |
| Cow position: | chr13:12045271-12044958 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 146 |
| Conread position: | 9-132 |
| Cow position: | chr13:48597981-48598108 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 9-148 |
| Cow position: | chr13:13465717-13465570 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 9-172 |
| Cow position: | chr13:16024662-16024832 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 89 |
| Conread position: | 9-262 |
| Cow position: | chr13:4208745-4208484 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 15-181 |
| Cow position: | chr13:61166380-61166204 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 96 |
| Conread position: | 15-240 |
| Cow position: | chr13:56148615-56148852 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 128 |
| Conread position: | 15-240 |
| Cow position: | chr13:56160352-56160115 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 128 |
| Conread position: | 15-269 |
| Cow position: | chr13:12448914-12448647 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 127 |
| Conread position: | 15-271 |
| Cow position: | chr13:19261889-19262149 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 156, 57 |
| Conread position: | 17-268 |
| Cow position: | chr13:45604342-45604072 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 17-291 |
| Cow position: | chr13:43629689-43629402 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 50, 191 |
| Conread position: | 19-288 |
| Cow position: | chr13:41359833-41360107 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 20-226 |
| Cow position: | chr13:25817606-25817811 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 27-303 |
| Cow position: | chr13:21989016-21988732 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 42, 174 |
| Conread position: | 33-170 |
| Cow position: | chr13:9570089-9570223 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 33-220 |
| Cow position: | chr13:37497656-37497464 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 121 |
| Conread position: | 33-303 |
| Cow position: | chr13:22775210-22774927 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 121 |
| Conread position: | 39-295 |
| Cow position: | chr13:32978131-32978378 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 193, 102 |
| Conread position: | 47-305 |
| Cow position: | chr13:16952785-16953047 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 156-288 |
| Cow position: | chr13:46606259-46606127 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.