Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-148 |
| Cow position: | chr17:7648175-7648026 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 1-171 |
| Cow position: | chr17:33052822-33052646 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-180 |
| Cow position: | chr17:20055635-20055444 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 2-169 |
| Cow position: | chr17:22781653-22781477 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 148 |
| Conread position: | 2-172 |
| Cow position: | chr17:21323254-21323082 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 2-176 |
| Cow position: | chr17:14088361-14088549 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 2-201 |
| Cow position: | chr17:18495559-18495754 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 3-165 |
| Cow position: | chr17:18929128-18929289 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 3-182 |
| Cow position: | chr17:36533617-36533433 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 3-236 |
| Cow position: | chr17:25707916-25707663 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 4-147 |
| Cow position: | chr17:37480032-37480186 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-161 |
| Cow position: | chr17:6624218-6624051 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-176 |
| Cow position: | chr17:9079236-9079408 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 4-176 |
| Cow position: | chr17:24761268-24761445 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-176 |
| Cow position: | chr17:32554065-32554245 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 4-181 |
| Cow position: | chr17:7132491-7132684 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-181 |
| Cow position: | chr17:25078043-25078220 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 4-187 |
| Cow position: | chr17:33999089-33999277 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 4-196 |
| Cow position: | chr17:20839601-20839799 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 4-217 |
| Cow position: | chr17:4612115-4612339 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 196 |
| Conread position: | 4-239 |
| Cow position: | chr17:21312851-21313100 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-240 |
| Cow position: | chr17:3471380-3471129 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-247 |
| Cow position: | chr17:13244081-13244313 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-250 |
| Cow position: | chr17:12216114-12216367 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 4-250 |
| Cow position: | chr17:35184997-35184738 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 4-251 |
| Cow position: | chr17:5688398-5688644 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 4-256 |
| Cow position: | chr17:40312686-40312430 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 161 |
| Conread position: | 4-271 |
| Cow position: | chr17:33271723-33271990 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 4-287 |
| Cow position: | chr17:30718459-30718747 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 14, 192 |
| Conread position: | 4-288 |
| Cow position: | chr17:22564141-22563863 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 154 |
| Conread position: | 4-289 |
| Cow position: | chr17:8690482-8690784 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 112 |
| Conread position: | 4-289 |
| Cow position: | chr17:43527937-43527650 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 145 |
| Conread position: | 4-290 |
| Cow position: | chr17:6566427-6566145 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 4-291 |
| Cow position: | chr17:9565269-9564975 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 225 |
| Conread position: | 4-291 |
| Cow position: | chr17:11397630-11397335 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 4-291 |
| Cow position: | chr17:24077363-24077071 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 124 |
| Conread position: | 4-292 |
| Cow position: | chr17:5895951-5896248 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 156 |
| Conread position: | 4-303 |
| Cow position: | chr17:3387247-3386950 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 4-303 |
| Cow position: | chr17:12059135-12059439 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 4-303 |
| Cow position: | chr17:16117463-16117778 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 213 |
| Conread position: | 4-303 |
| Cow position: | chr17:37342524-37342820 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 4-304 |
| Cow position: | chr17:20800776-20800468 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 280 |
| Conread position: | 4-304 |
| Cow position: | chr17:21959727-21960025 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 4-304 |
| Cow position: | chr17:28539989-28539694 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 103 |
| Conread position: | 4-306 |
| Cow position: | chr17:20993080-20993388 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 92 |
| Conread position: | 4-309 |
| Cow position: | chr17:14003777-14003476 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 5-254 |
| Cow position: | chr17:36746369-36746612 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 5-292 |
| Cow position: | chr17:24553967-24553669 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 276 |
| Conread position: | 7-181 |
| Cow position: | chr17:7698010-7697829 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 7-199 |
| Cow position: | chr17:24877099-24876893 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 7-246 |
| Cow position: | chr17:16869320-16869569 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 7-272 |
| Cow position: | chr17:5733504-5733751 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 7-289 |
| Cow position: | chr17:42419680-42419405 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 144 |
| Conread position: | 7-301 |
| Cow position: | chr17:23803415-23803120 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 7-314 |
| Cow position: | chr17:32989438-32989136 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 8-250 |
| Cow position: | chr17:30529584-30529832 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 9-164 |
| Cow position: | chr17:966785-966949 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 9-310 |
| Cow position: | chr17:20358830-20358525 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 108 |
| Conread position: | 14-182 |
| Cow position: | chr17:15354931-15354758 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 15-270 |
| Cow position: | chr17:36265296-36265549 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 81, 56 |
| Conread position: | 15-272 |
| Cow position: | chr17:25875360-25875091 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 207 |
| Conread position: | 15-303 |
| Cow position: | chr17:11056423-11056724 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 260 |
| Conread position: | 15-303 |
| Cow position: | chr17:20129614-20129331 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 16-303 |
| Cow position: | chr17:5898577-5898873 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 40, 144 |
| Conread position: | 17-289 |
| Cow position: | chr17:18201705-18201444 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 39-181 |
| Cow position: | chr17:7423517-7423668 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 41-176 |
| Cow position: | chr17:15376244-15376101 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.