Cow genome map

Conread name: Ova1-OVRM10212D05

Conread position: 1-176
Cow position: chr2:55480315-55480500 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 160

Conread position: 1-289
Cow position: chr2:777765-778066 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 17, 148

Conread position: 2-184
Cow position: chr2:31750045-31750239 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 2-222
Cow position: chr2:22084902-22084679 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 20, 69

Conread position: 2-289
Cow position: chr2:58247950-58248235 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 88

Conread position: 2-303
Cow position: chr2:305926-306233 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 157

Conread position: 3-127
Cow position: chr2:39513944-39513813 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 118

Conread position: 3-176
Cow position: chr2:13354596-13354413 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 15, 0

Conread position: 4-127
Cow position: chr2:1487093-1486966 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 4-138
Cow position: chr2:6232532-6232391 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 4-148
Cow position: chr2:15329312-15329168 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 36

Conread position: 4-148
Cow position: chr2:80963727-80963879 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 0

Conread position: 4-154
Cow position: chr2:44229768-44229930 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 4-170
Cow position: chr2:32048400-32048232 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 139
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 13, 36

Conread position: 4-172
Cow position: chr2:49428300-49428128 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 4-173
Cow position: chr2:47073113-47072932 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 147
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 28, 112

Conread position: 4-176
Cow position: chr2:32408571-32408737 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 134

Conread position: 4-176
Cow position: chr2:45880859-45881029 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 140
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 14, 36

Conread position: 4-176
Cow position: chr2:59992325-59992501 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 4-178
Cow position: chr2:25283734-25283546 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 13, 39

Conread position: 4-178
Cow position: chr2:25285478-25285290 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 39

Conread position: 4-181
Cow position: chr2:333166-333344 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 28

Conread position: 4-181
Cow position: chr2:30816882-30816690 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 14, 126

Conread position: 4-186
Cow position: chr2:46244100-46244298 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 4-186
Cow position: chr2:50580293-50580096 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 161

Conread position: 4-205
Cow position: chr2:41185393-41185180 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 35

Conread position: 4-214
Cow position: chr2:46344608-46344382 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 4-216
Cow position: chr2:73985097-73985323 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 0

Conread position: 4-216
Cow position: chr2:74031064-74031290 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 0

Conread position: 4-220
Cow position: chr2:26501013-26501246 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 230

Conread position: 4-226
Cow position: chr2:61187207-61187434 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 14, 192

Conread position: 4-229
Cow position: chr2:64292792-64293014 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 67

Conread position: 4-233
Cow position: chr2:13543944-13543709 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 104

Conread position: 4-243
Cow position: chr2:27178576-27178321 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 205
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 14, 105

Conread position: 4-267
Cow position: chr2:44065510-44065239 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 155

Conread position: 4-268
Cow position: chr2:52344674-52344408 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 66

Conread position: 4-269
Cow position: chr2:44482727-44483000 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 56

Conread position: 4-270
Cow position: chr2:22372027-22372300 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 150

Conread position: 4-270
Cow position: chr2:70746717-70746422 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 14, 113

Conread position: 4-272
Cow position: chr2:39281114-39280835 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 14

Conread position: 4-289
Cow position: chr2:13580167-13579870 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 284

Conread position: 4-289
Cow position: chr2:20855908-20856197 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 278

Conread position: 4-289
Cow position: chr2:27337855-27338155 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 156

Conread position: 4-289
Cow position: chr2:46734378-46734083 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 282

Conread position: 4-289
Cow position: chr2:49344632-49344342 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 14, 88

Conread position: 4-290
Cow position: chr2:64533266-64532972 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 6, 190

Conread position: 4-292
Cow position: chr2:1303868-1303574 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 219

Conread position: 4-292
Cow position: chr2:23493457-23493159 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 160

Conread position: 4-292
Cow position: chr2:81927773-81927477 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 4-303
Cow position: chr2:14854234-14853935 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 4-303
Cow position: chr2:46170956-46171256 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 46

Conread position: 4-303
Cow position: chr2:47047833-47048139 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 194

Conread position: 4-303
Cow position: chr2:70674646-70674350 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 61

Conread position: 4-304
Cow position: chr2:1364966-1365281 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 251

Conread position: 4-304
Cow position: chr2:17940367-17940673 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 127

Conread position: 4-304
Cow position: chr2:64473718-64474018 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 203

Conread position: 4-304
Cow position: chr2:69250751-69251067 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 162

Conread position: 4-317
Cow position: chr2:54790202-54789872 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 14, 160

Conread position: 4-322
Cow position: chr2:42599851-42599518 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 21, 36

Conread position: 5-163
Cow position: chr2:20940359-20940190 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 5-170
Cow position: chr2:39663319-39663138 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 5-176
Cow position: chr2:36044429-36044617 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 65, 12

Conread position: 5-180
Cow position: chr2:24469742-24469923 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 155
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 5-288
Cow position: chr2:27600622-27600917 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 283

Conread position: 5-303
Cow position: chr2:31125705-31125397 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 95

Conread position: 5-308
Cow position: chr2:31499920-31499608 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 12

Conread position: 6-217
Cow position: chr2:48232515-48232735 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 52, 134

Conread position: 7-138
Cow position: chr2:15597558-15597694 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 32

Conread position: 7-176
Cow position: chr2:42183291-42183109 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 11, 145

Conread position: 7-236
Cow position: chr2:74209415-74209645 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 59, 13

Conread position: 7-254
Cow position: chr2:39566758-39567015 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 11, 151

Conread position: 7-303
Cow position: chr2:37072734-37072426 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 227

Conread position: 7-304
Cow position: chr2:40880006-40879701 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 33

Conread position: 8-289
Cow position: chr2:45623932-45623653 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 111

Conread position: 9-152
Cow position: chr2:39489698-39489546 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 9-176
Cow position: chr2:50766407-50766226 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 34

Conread position: 9-236
Cow position: chr2:36575655-36575411 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 159

Conread position: 9-303
Cow position: chr2:34571550-34571855 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 224
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 42, 275

Conread position: 11-181
Cow position: chr2:26102693-26102513 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 5, 0

Conread position: 15-267
Cow position: chr2:28285622-28285883 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 15-292
Cow position: chr2:45462664-45462947 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 43, 131

Conread position: 15-302
Cow position: chr2:41147773-41147488 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 129

Conread position: 15-303
Cow position: chr2:16752245-16752526 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 85, 66

Conread position: 22-263
Cow position: chr2:30642768-30643013 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 37, 160

Conread position: 25-236
Cow position: chr2:21018031-21018236 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 25-267
Cow position: chr2:7966012-7965766 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-194
Cow position: chr2:54700344-54700169 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 37, 125

Conread position: 32-288
Cow position: chr2:86533165-86532900 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 27, 60

Conread position: 32-292
Cow position: chr2:18061735-18062010 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 36, 258

Conread position: 32-292
Cow position: chr2:82270364-82270095 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 134

Conread position: 39-251
Cow position: chr2:78599227-78599442 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 129

Conread position: 39-291
Cow position: chr2:56771724-56771472 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 138

Conread position: 39-292
Cow position: chr2:47784259-47783998 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 210
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 30, 85

Show alignments to all cow chromosomes.