Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-239 |
| Cow position: | chr20:34202614-34202364 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-176 |
| Cow position: | chr20:12205766-12205932 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 64 |
| Conread position: | 2-193 |
| Cow position: | chr20:21016447-21016243 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 16, 155 |
| Conread position: | 3-305 |
| Cow position: | chr20:18491145-18490845 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 4-142 |
| Cow position: | chr20:37165687-37165540 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-147 |
| Cow position: | chr20:13994775-13994618 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-163 |
| Cow position: | chr20:38551335-38551167 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-167 |
| Cow position: | chr20:35907090-35907257 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 4-170 |
| Cow position: | chr20:11482173-11482353 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-172 |
| Cow position: | chr20:41451844-41452022 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-175 |
| Cow position: | chr20:14879748-14879567 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 4-176 |
| Cow position: | chr20:5025343-5025522 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-176 |
| Cow position: | chr20:7442166-7442344 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-176 |
| Cow position: | chr20:29633037-29633211 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-176 |
| Cow position: | chr20:40185719-40185893 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 4-177 |
| Cow position: | chr20:11923281-11923462 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-180 |
| Cow position: | chr20:1139814-1139997 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 151 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-181 |
| Cow position: | chr20:3321180-3321360 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-197 |
| Cow position: | chr20:20312785-20312978 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-199 |
| Cow position: | chr20:40256932-40256725 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 4-206 |
| Cow position: | chr20:22235276-22235062 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-218 |
| Cow position: | chr20:24521713-24521489 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-219 |
| Cow position: | chr20:13967298-13967522 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-231 |
| Cow position: | chr20:21714717-21714477 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 193 |
| Conread position: | 4-246 |
| Cow position: | chr20:39728410-39728161 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 156 |
| Conread position: | 4-248 |
| Cow position: | chr20:16291435-16291187 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 4-251 |
| Cow position: | chr20:31069599-31069347 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 122 |
| Conread position: | 4-272 |
| Cow position: | chr20:12334336-12334067 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 223 |
| Conread position: | 4-272 |
| Cow position: | chr20:26469102-26469394 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-275 |
| Cow position: | chr20:35797570-35797285 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 4-288 |
| Cow position: | chr20:5104479-5104765 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 140 |
| Conread position: | 4-288 |
| Cow position: | chr20:9433547-9433275 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 4-288 |
| Cow position: | chr20:18185528-18185249 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 4-289 |
| Cow position: | chr20:580961-581258 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-289 |
| Cow position: | chr20:3599429-3599722 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-289 |
| Cow position: | chr20:10469027-10468744 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 4-289 |
| Cow position: | chr20:22959380-22959674 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 156 |
| Conread position: | 4-289 |
| Cow position: | chr20:29845012-29844714 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 4-289 |
| Cow position: | chr20:35145978-35145676 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 289 |
| Conread position: | 4-289 |
| Cow position: | chr20:40423128-40423421 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 280 |
| Conread position: | 4-290 |
| Cow position: | chr20:15576926-15577223 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 4-291 |
| Cow position: | chr20:19146836-19146534 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 4-292 |
| Cow position: | chr20:4945284-4945579 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 261 |
| Conread position: | 4-292 |
| Cow position: | chr20:23679186-23679481 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 276 |
| Conread position: | 4-295 |
| Cow position: | chr20:14756106-14756403 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 156 |
| Conread position: | 4-299 |
| Cow position: | chr20:33144591-33144895 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 163 |
| Conread position: | 4-302 |
| Cow position: | chr20:26077042-26076743 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 4-303 |
| Cow position: | chr20:13493696-13493392 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 277 |
| Conread position: | 4-303 |
| Cow position: | chr20:20983958-20983680 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-304 |
| Cow position: | chr20:17733813-17734119 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 149 |
| Conread position: | 4-310 |
| Cow position: | chr20:14740134-14740440 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 13, 159 |
| Conread position: | 6-195 |
| Cow position: | chr20:10200307-10200102 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 6-303 |
| Cow position: | chr20:31261685-31261394 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 95 |
| Conread position: | 8-289 |
| Cow position: | chr20:4621387-4621671 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 205 |
| Conread position: | 9-175 |
| Cow position: | chr20:6848584-6848403 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 147 |
| Conread position: | 9-227 |
| Cow position: | chr20:35958602-35958378 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 149 |
| Conread position: | 15-152 |
| Cow position: | chr20:34098009-34098154 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 15-174 |
| Cow position: | chr20:13023525-13023696 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 15-291 |
| Cow position: | chr20:12840006-12839725 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 15-294 |
| Cow position: | chr20:11765658-11765941 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 15-303 |
| Cow position: | chr20:11453405-11453700 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 144 |
| Conread position: | 15-308 |
| Cow position: | chr20:21019513-21019217 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 18-169 |
| Cow position: | chr20:22851100-22850949 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 21-292 |
| Cow position: | chr20:3658756-3659028 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 173 |
| Conread position: | 21-307 |
| Cow position: | chr20:32548905-32548621 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 27-161 |
| Cow position: | chr20:16496920-16497052 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 31-239 |
| Cow position: | chr20:31148021-31147813 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 32-289 |
| Cow position: | chr20:14718808-14719071 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 128 |
| Conread position: | 38-303 |
| Cow position: | chr20:7756702-7756972 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 144 |
| Conread position: | 39-303 |
| Cow position: | chr20:4892975-4893258 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 257 |
| Conread position: | 75-288 |
| Cow position: | chr20:36854863-36854650 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.