Cow genome map

Conread name: Ova1-OVRM10212D05

Conread position: 1-308
Cow position: chr3:522607-522311 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 64

Conread position: 2-187
Cow position: chr3:23876892-23876699 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 154
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 22, 0

Conread position: 2-290
Cow position: chr3:82359940-82359631 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 69, 13

Conread position: 2-296
Cow position: chr3:7408385-7408080 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 260

Conread position: 2-303
Cow position: chr3:3164598-3164903 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 196

Conread position: 3-170
Cow position: chr3:34392201-34392376 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 15, 37

Conread position: 3-176
Cow position: chr3:23944992-23944811 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 22

Conread position: 3-181
Cow position: chr3:73759620-73759810 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 36

Conread position: 3-186
Cow position: chr3:37451962-37451772 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 31, 21

Conread position: 3-292
Cow position: chr3:49650282-49649981 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 158

Conread position: 3-303
Cow position: chr3:76188582-76188285 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 38

Conread position: 4-119
Cow position: chr3:76015186-76015070 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 14, 77

Conread position: 4-134
Cow position: chr3:23444998-23445134 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 4-145
Cow position: chr3:48578729-48578586 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 123
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 14, 29

Conread position: 4-146
Cow position: chr3:23269993-23269846 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 14, 41

Conread position: 4-160
Cow position: chr3:13301953-13302126 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 4-164
Cow position: chr3:75045982-75046144 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 61

Conread position: 4-169
Cow position: chr3:42483796-42483621 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 4-169
Cow position: chr3:42588252-42588070 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 4-169
Cow position: chr3:83369212-83369043 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 64, 13

Conread position: 4-170
Cow position: chr3:63860996-63861181 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 4-170
Cow position: chr3:75158254-75158085 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 36

Conread position: 4-171
Cow position: chr3:77365403-77365575 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 143
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 14, 0

Conread position: 4-174
Cow position: chr3:8393246-8393062 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 4-174
Cow position: chr3:73764300-73764477 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 140

Conread position: 4-176
Cow position: chr3:13329883-13330058 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 13, 36

Conread position: 4-176
Cow position: chr3:52863289-52863469 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 102

Conread position: 4-178
Cow position: chr3:17895741-17895566 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 14, 36

Conread position: 4-178
Cow position: chr3:23408457-23408630 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 36

Conread position: 4-180
Cow position: chr3:30418024-30417839 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 4-181
Cow position: chr3:14601817-14602004 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 14, 92

Conread position: 4-181
Cow position: chr3:51609716-51609525 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 4-181
Cow position: chr3:71430312-71430498 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 168

Conread position: 4-182
Cow position: chr3:48629698-48629878 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 37

Conread position: 4-188
Cow position: chr3:11020016-11019820 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 92

Conread position: 4-215
Cow position: chr3:46901092-46900869 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 158

Conread position: 4-219
Cow position: chr3:55970401-55970178 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 155

Conread position: 4-220
Cow position: chr3:76138375-76138160 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 14, 60

Conread position: 4-232
Cow position: chr3:210212-209980 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 4-232
Cow position: chr3:13577292-13577539 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 18, 35

Conread position: 4-236
Cow position: chr3:11640328-11640091 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 201

Conread position: 4-245
Cow position: chr3:17952551-17952301 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 4-251
Cow position: chr3:57764122-57763846 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 14, 36

Conread position: 4-251
Cow position: chr3:68648060-68647799 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 4-263
Cow position: chr3:7678563-7678302 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 203
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 147

Conread position: 4-269
Cow position: chr3:49230912-49230636 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 162

Conread position: 4-272
Cow position: chr3:11987223-11986949 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 186

Conread position: 4-272
Cow position: chr3:68145947-68146206 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 14, 119

Conread position: 4-288
Cow position: chr3:14626262-14626546 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 78

Conread position: 4-289
Cow position: chr3:2506581-2506876 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 163

Conread position: 4-289
Cow position: chr3:14465816-14466101 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 14, 29

Conread position: 4-289
Cow position: chr3:19708209-19708494 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 99

Conread position: 4-289
Cow position: chr3:26904011-26903720 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 29

Conread position: 4-289
Cow position: chr3:51033238-51032948 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 18

Conread position: 4-289
Cow position: chr3:59000857-59001137 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 4-289
Cow position: chr3:65413385-65413684 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 36

Conread position: 4-290
Cow position: chr3:82461073-82460774 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 229
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 14, 95

Conread position: 4-291
Cow position: chr3:23277647-23277942 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 181

Conread position: 4-292
Cow position: chr3:53384389-53384683 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 278

Conread position: 4-295
Cow position: chr3:8147773-8148065 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 142

Conread position: 4-301
Cow position: chr3:49455133-49454821 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 285

Conread position: 4-302
Cow position: chr3:36656874-36657183 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 283

Conread position: 4-302
Cow position: chr3:80581559-80581267 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 180

Conread position: 4-303
Cow position: chr3:18459626-18459931 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 278

Conread position: 4-303
Cow position: chr3:30179976-30179673 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 179

Conread position: 4-303
Cow position: chr3:35299561-35299264 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 271

Conread position: 4-303
Cow position: chr3:48252779-48252484 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 110

Conread position: 4-303
Cow position: chr3:61678589-61678278 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 287

Conread position: 4-327
Cow position: chr3:12712023-12712361 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 287

Conread position: 5-184
Cow position: chr3:55124384-55124574 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 24

Conread position: 5-254
Cow position: chr3:60597437-60597190 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 80

Conread position: 5-289
Cow position: chr3:51012638-51012935 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 283

Conread position: 7-180
Cow position: chr3:56704652-56704827 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 143
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 11, 26

Conread position: 7-217
Cow position: chr3:83921095-83920874 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 195

Conread position: 7-231
Cow position: chr3:61171613-61171843 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 155

Conread position: 7-233
Cow position: chr3:31309462-31309708 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 11, 0

Conread position: 7-289
Cow position: chr3:1830677-1830962 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 26

Conread position: 7-302
Cow position: chr3:74234088-74233800 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 10, 33

Conread position: 7-303
Cow position: chr3:116090-115810 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 63

Conread position: 7-304
Cow position: chr3:58540637-58540953 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 220
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 150

Conread position: 9-177
Cow position: chr3:29813134-29812957 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 31

Conread position: 9-181
Cow position: chr3:49388729-49388551 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 72, 55

Conread position: 9-234
Cow position: chr3:79292720-79292491 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 177

Conread position: 9-272
Cow position: chr3:11026809-11026544 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 48

Conread position: 10-200
Cow position: chr3:30463278-30463474 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 163
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 8, 19

Conread position: 15-161
Cow position: chr3:84000496-84000341 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 126
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 54, 0

Conread position: 15-268
Cow position: chr3:68514676-68514927 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 15-303
Cow position: chr3:5495612-5495907 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 43, 226

Conread position: 17-218
Cow position: chr3:31516887-31517087 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 123, 0

Conread position: 21-304
Cow position: chr3:68303212-68302915 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 268

Conread position: 22-307
Cow position: chr3:48530514-48530223 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 154

Conread position: 39-292
Cow position: chr3:81371507-81371256 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 46

Conread position: 47-289
Cow position: chr3:25673290-25673521 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 22, 38

Conread position: 78-302
Cow position: chr3:66649630-66649855 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 215, 0

Conread position: 165-305
Cow position: chr3:73936300-73936440 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 105, 113

Show alignments to all cow chromosomes.