Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-163 |
| Cow position: | chr4:59008455-59008626 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 17, 154 |
| Conread position: | 2-148 |
| Cow position: | chr4:65538504-65538650 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 2-203 |
| Cow position: | chr4:14414429-14414641 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 166 |
| Conread position: | 2-289 |
| Cow position: | chr4:57555884-57555585 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 286 |
| Conread position: | 3-181 |
| Cow position: | chr4:23509505-23509314 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 15, 176 |
| Conread position: | 3-233 |
| Cow position: | chr4:37915426-37915656 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 3-289 |
| Cow position: | chr4:49992990-49992706 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 3-303 |
| Cow position: | chr4:22073403-22073698 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 15, 96 |
| Conread position: | 4-151 |
| Cow position: | chr4:46370726-46370565 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-161 |
| Cow position: | chr4:12676716-12676558 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 4-162 |
| Cow position: | chr4:19322171-19322335 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-162 |
| Cow position: | chr4:20157506-20157669 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 4-167 |
| Cow position: | chr4:34310539-34310716 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-174 |
| Cow position: | chr4:63119326-63119499 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 4-176 |
| Cow position: | chr4:21371302-21371130 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 4-176 |
| Cow position: | chr4:46456149-46456317 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 4-176 |
| Cow position: | chr4:46591576-46591392 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 153 |
| Conread position: | 4-176 |
| Cow position: | chr4:54930509-54930686 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 4-177 |
| Cow position: | chr4:15439490-15439326 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 4-177 |
| Cow position: | chr4:62567322-62567134 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-180 |
| Cow position: | chr4:26746393-26746210 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-186 |
| Cow position: | chr4:395846-395669 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 4-193 |
| Cow position: | chr4:45775429-45775628 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 149 |
| Conread position: | 4-195 |
| Cow position: | chr4:39128445-39128242 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 14, 185 |
| Conread position: | 4-216 |
| Cow position: | chr4:37343026-37342806 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 28, 216 |
| Conread position: | 4-226 |
| Cow position: | chr4:285560-285337 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 4-229 |
| Cow position: | chr4:19561595-19561372 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-229 |
| Cow position: | chr4:42266841-42267062 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 4-230 |
| Cow position: | chr4:16859819-16860040 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 6, 62 |
| Conread position: | 4-240 |
| Cow position: | chr4:16736419-16736172 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 198 |
| Conread position: | 4-251 |
| Cow position: | chr4:48137822-48137569 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 157 |
| Conread position: | 4-270 |
| Cow position: | chr4:42232569-42232305 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 4-282 |
| Cow position: | chr4:3388458-3388174 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 140 |
| Conread position: | 4-287 |
| Cow position: | chr4:27276634-27276922 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-289 |
| Cow position: | chr4:3990712-3991004 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 4-289 |
| Cow position: | chr4:27755389-27755686 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 190 |
| Conread position: | 4-290 |
| Cow position: | chr4:67392870-67392579 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 4-291 |
| Cow position: | chr4:7430234-7429937 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-291 |
| Cow position: | chr4:22236569-22236858 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 4-292 |
| Cow position: | chr4:10732134-10731836 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 155 |
| Conread position: | 4-292 |
| Cow position: | chr4:24118996-24119295 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 283 |
| Conread position: | 4-292 |
| Cow position: | chr4:30690632-30690354 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 192 |
| Conread position: | 4-292 |
| Cow position: | chr4:37619976-37620271 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 165 |
| Conread position: | 4-292 |
| Cow position: | chr4:41301079-41301384 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-300 |
| Cow position: | chr4:45589688-45589981 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 4-302 |
| Cow position: | chr4:961751-962044 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 4-303 |
| Cow position: | chr4:27292045-27292355 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-303 |
| Cow position: | chr4:41097829-41097518 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 211 |
| Conread position: | 4-303 |
| Cow position: | chr4:51903515-51903206 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 279 |
| Conread position: | 4-304 |
| Cow position: | chr4:20829-20531 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 58, 119 |
| Conread position: | 4-308 |
| Cow position: | chr4:22138320-22138634 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 207 |
| Conread position: | 5-247 |
| Cow position: | chr4:65841852-65842091 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 5-292 |
| Cow position: | chr4:11090782-11091064 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 149 |
| Conread position: | 7-147 |
| Cow position: | chr4:52497679-52497816 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 7-172 |
| Cow position: | chr4:22345109-22345281 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 7-236 |
| Cow position: | chr4:508994-509228 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 7-252 |
| Cow position: | chr4:4736939-4736691 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 109 |
| Conread position: | 7-272 |
| Cow position: | chr4:59055945-59056205 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 7-288 |
| Cow position: | chr4:10056121-10055831 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 278 |
| Conread position: | 7-289 |
| Cow position: | chr4:23854104-23853824 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 7-304 |
| Cow position: | chr4:46492791-46492501 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 8-148 |
| Cow position: | chr4:16091491-16091642 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 8-250 |
| Cow position: | chr4:26323644-26323398 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 9-211 |
| Cow position: | chr4:20502552-20502343 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 9-303 |
| Cow position: | chr4:13589993-13589700 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 129 |
| Conread position: | 10-166 |
| Cow position: | chr4:656910-657079 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 15-170 |
| Cow position: | chr4:55395660-55395504 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 15-289 |
| Cow position: | chr4:22849815-22850101 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 74 |
| Conread position: | 16-188 |
| Cow position: | chr4:7571307-7571127 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 17-180 |
| Cow position: | chr4:52632074-52632243 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 21-181 |
| Cow position: | chr4:46385679-46385853 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 25-177 |
| Cow position: | chr4:22115496-22115335 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-303 |
| Cow position: | chr4:14131402-14131110 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 29-176 |
| Cow position: | chr4:59105921-59106081 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 33-252 |
| Cow position: | chr4:56239967-56240192 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 162 |
| Conread position: | 39-166 |
| Cow position: | chr4:61066525-61066392 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 75-288 |
| Cow position: | chr4:2590743-2590956 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.