Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-289 |
| Cow position: | chr5:31481094-31480805 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 276 |
| Conread position: | 2-250 |
| Cow position: | chr5:28224400-28224144 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 3-174 |
| Cow position: | chr5:25495406-25495573 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 3-180 |
| Cow position: | chr5:11668240-11668419 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 3-180 |
| Cow position: | chr5:64758826-64759009 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 4-154 |
| Cow position: | chr5:35235765-35235924 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 4-157 |
| Cow position: | chr5:62142615-62142452 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-165 |
| Cow position: | chr5:18090668-18090501 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 4-166 |
| Cow position: | chr5:51490814-51490981 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 120 |
| Conread position: | 4-166 |
| Cow position: | chr5:56820318-56820487 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-169 |
| Cow position: | chr5:3771792-3771616 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-176 |
| Cow position: | chr5:54350419-54350598 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-176 |
| Cow position: | chr5:73080144-73079975 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 4-177 |
| Cow position: | chr5:30638914-30639088 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 4-177 |
| Cow position: | chr5:32975607-32975789 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 14, 156 |
| Conread position: | 4-181 |
| Cow position: | chr5:52000166-51999977 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-218 |
| Cow position: | chr5:57327741-57327509 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 190 |
| Conread position: | 4-226 |
| Cow position: | chr5:9090076-9090307 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-249 |
| Cow position: | chr5:54311279-54311013 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 13, 127 |
| Conread position: | 4-254 |
| Cow position: | chr5:37941845-37942108 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 4-254 |
| Cow position: | chr5:50722993-50722732 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 119 |
| Conread position: | 4-271 |
| Cow position: | chr5:26990336-26990066 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-272 |
| Cow position: | chr5:45225880-45226162 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 115 |
| Conread position: | 4-288 |
| Cow position: | chr5:24485493-24485757 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 4-289 |
| Cow position: | chr5:6130297-6130008 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 156 |
| Conread position: | 4-289 |
| Cow position: | chr5:7921456-7921730 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-289 |
| Cow position: | chr5:24349052-24348773 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 190 |
| Conread position: | 4-289 |
| Cow position: | chr5:30487181-30486903 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 4-289 |
| Cow position: | chr5:50821726-50821440 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-289 |
| Cow position: | chr5:55176834-55176544 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-290 |
| Cow position: | chr5:34887250-34887547 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 140 |
| Conread position: | 4-292 |
| Cow position: | chr5:15363838-15363542 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 4-292 |
| Cow position: | chr5:40356921-40357238 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 4-292 |
| Cow position: | chr5:41129704-41129403 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-300 |
| Cow position: | chr5:47871099-47871410 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 185 |
| Conread position: | 4-301 |
| Cow position: | chr5:23140631-23140939 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 257 |
| Conread position: | 4-303 |
| Cow position: | chr5:14550637-14550949 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 282 |
| Conread position: | 4-303 |
| Cow position: | chr5:16509040-16508730 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 117 |
| Conread position: | 4-303 |
| Cow position: | chr5:29827993-29827691 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 4-303 |
| Cow position: | chr5:44583184-44583478 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 4-303 |
| Cow position: | chr5:49821091-49820779 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 4-303 |
| Cow position: | chr5:65932984-65933291 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 120 |
| Conread position: | 4-303 |
| Cow position: | chr5:70250087-70249792 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 4-304 |
| Cow position: | chr5:53855642-53855337 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 4-309 |
| Cow position: | chr5:42777708-42777406 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 14, 178 |
| Conread position: | 5-288 |
| Cow position: | chr5:55068651-55068375 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 5-303 |
| Cow position: | chr5:41981340-41981040 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 274 |
| Conread position: | 6-169 |
| Cow position: | chr5:57156717-57156558 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 7-148 |
| Cow position: | chr5:57737051-57736905 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 7-169 |
| Cow position: | chr5:36868681-36868515 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 7-174 |
| Cow position: | chr5:36855146-36854977 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 141 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 7-235 |
| Cow position: | chr5:33080847-33081086 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 139 |
| Conread position: | 7-272 |
| Cow position: | chr5:39937047-39936770 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 156 |
| Conread position: | 7-303 |
| Cow position: | chr5:64844179-64844479 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 76 |
| Conread position: | 9-173 |
| Cow position: | chr5:20779447-20779614 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 9-240 |
| Cow position: | chr5:58989-59225 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 146 |
| Conread position: | 9-289 |
| Cow position: | chr5:6528621-6528333 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 275 |
| Conread position: | 10-303 |
| Cow position: | chr5:18574112-18573806 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 277 |
| Conread position: | 15-220 |
| Cow position: | chr5:52905561-52905769 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 15-288 |
| Cow position: | chr5:70290413-70290138 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 263 |
| Conread position: | 17-307 |
| Cow position: | chr5:31635366-31635083 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 160, 47 |
| Conread position: | 18-289 |
| Cow position: | chr5:3582503-3582229 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 21-248 |
| Cow position: | chr5:65752783-65752550 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 151 |
| Conread position: | 25-152 |
| Cow position: | chr5:4280386-4280251 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 25-177 |
| Cow position: | chr5:9498306-9498151 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 25-239 |
| Cow position: | chr5:4552058-4551832 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 32-290 |
| Cow position: | chr5:38805423-38805693 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 34-290 |
| Cow position: | chr5:32336144-32336398 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 38, 80 |
| Conread position: | 37-287 |
| Cow position: | chr5:42845695-42845946 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 64-288 |
| Cow position: | chr5:59450062-59450287 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 118, 164 |
Show alignments to all cow chromosomes.