Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-176 |
| Cow position: | chr6:14949517-14949704 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-292 |
| Cow position: | chr6:1886703-1886984 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 91 |
| Conread position: | 2-218 |
| Cow position: | chr6:40713540-40713763 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 2-289 |
| Cow position: | chr6:25359034-25358743 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 2-290 |
| Cow position: | chr6:9732883-9733166 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 72 |
| Conread position: | 3-176 |
| Cow position: | chr6:9026474-9026294 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 3-276 |
| Cow position: | chr6:20230869-20231148 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 134 |
| Conread position: | 3-301 |
| Cow position: | chr6:65862650-65862338 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 285 |
| Conread position: | 3-303 |
| Cow position: | chr6:8318204-8318514 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 3-303 |
| Cow position: | chr6:53345756-53345448 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 281 |
| Conread position: | 4-146 |
| Cow position: | chr6:53519665-53519816 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-148 |
| Cow position: | chr6:53731480-53731326 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-152 |
| Cow position: | chr6:8788079-8788236 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-168 |
| Cow position: | chr6:17997356-17997530 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 4-168 |
| Cow position: | chr6:21061929-21062099 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 4-173 |
| Cow position: | chr6:21110923-21110749 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 4-174 |
| Cow position: | chr6:29239898-29239722 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-176 |
| Cow position: | chr6:10636129-10635954 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-176 |
| Cow position: | chr6:15300860-15301040 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-177 |
| Cow position: | chr6:37149146-37148975 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 4-178 |
| Cow position: | chr6:6063332-6063504 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 4-180 |
| Cow position: | chr6:19401814-19401635 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 4-190 |
| Cow position: | chr6:34251330-34251512 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 118 |
| Conread position: | 4-228 |
| Cow position: | chr6:42961402-42961642 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-239 |
| Cow position: | chr6:54867472-54867226 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 4-239 |
| Cow position: | chr6:57164385-57164141 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 4-240 |
| Cow position: | chr6:62479205-62479452 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 9, 159 |
| Conread position: | 4-247 |
| Cow position: | chr6:12500820-12500563 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-247 |
| Cow position: | chr6:40264242-40264487 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 13, 223 |
| Conread position: | 4-270 |
| Cow position: | chr6:67544338-67544609 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-272 |
| Cow position: | chr6:1783819-1784084 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 4-272 |
| Cow position: | chr6:35181300-35181571 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 208 |
| Conread position: | 4-287 |
| Cow position: | chr6:16411149-16410864 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 4-288 |
| Cow position: | chr6:24781598-24781897 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 163 |
| Conread position: | 4-288 |
| Cow position: | chr6:36470608-36470898 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 4-292 |
| Cow position: | chr6:6067733-6068025 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 4-292 |
| Cow position: | chr6:24327183-24327472 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 4-292 |
| Cow position: | chr6:57474339-57474043 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 19, 280 |
| Conread position: | 4-301 |
| Cow position: | chr6:53178597-53178291 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 151 |
| Conread position: | 4-303 |
| Cow position: | chr6:9751087-9751394 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-303 |
| Cow position: | chr6:12623428-12623123 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 4-303 |
| Cow position: | chr6:13741661-13741350 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 4-303 |
| Cow position: | chr6:16737978-16737673 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 4-303 |
| Cow position: | chr6:53932889-53933196 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 140 |
| Conread position: | 4-303 |
| Cow position: | chr6:61631650-61631961 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 199 |
| Conread position: | 4-310 |
| Cow position: | chr6:67214703-67214387 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 4-339 |
| Cow position: | chr6:54140768-54140440 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 5-322 |
| Cow position: | chr6:44078474-44078140 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 7-152 |
| Cow position: | chr6:10399945-10400094 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 7-162 |
| Cow position: | chr6:31928220-31928064 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 7-176 |
| Cow position: | chr6:66433901-66433725 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 7-180 |
| Cow position: | chr6:59301865-59302051 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 174 |
| Conread position: | 7-215 |
| Cow position: | chr6:54294063-54293849 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 7-226 |
| Cow position: | chr6:54365375-54365596 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 7-289 |
| Cow position: | chr6:47305295-47304994 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 7-303 |
| Cow position: | chr6:607222-606914 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 281 |
| Conread position: | 7-304 |
| Cow position: | chr6:1770243-1770545 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 9-203 |
| Cow position: | chr6:3719051-3719258 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 9-234 |
| Cow position: | chr6:21535009-21534778 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 9-251 |
| Cow position: | chr6:21812684-21812420 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 238 |
| Conread position: | 9-272 |
| Cow position: | chr6:19681569-19681835 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 9-288 |
| Cow position: | chr6:10649071-10649351 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 9-289 |
| Cow position: | chr6:55607860-55608140 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 267 |
| Conread position: | 9-307 |
| Cow position: | chr6:41823869-41824180 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 10-180 |
| Cow position: | chr6:51398754-51398574 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 10-289 |
| Cow position: | chr6:5302457-5302733 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 167 |
| Conread position: | 10-289 |
| Cow position: | chr6:47540484-47540191 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 280 |
| Conread position: | 15-249 |
| Cow position: | chr6:38771232-38771002 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 15-303 |
| Cow position: | chr6:6769222-6768929 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 15-309 |
| Cow position: | chr6:18080561-18080869 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 277 |
| Conread position: | 16-153 |
| Cow position: | chr6:21231476-21231336 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 16-240 |
| Cow position: | chr6:7130935-7131158 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 16-272 |
| Cow position: | chr6:27851762-27852023 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 140 |
| Conread position: | 17-213 |
| Cow position: | chr6:65903672-65903876 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 17-213 |
| Cow position: | chr6:65904323-65904527 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 21-289 |
| Cow position: | chr6:24652247-24652514 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 21-301 |
| Cow position: | chr6:59829207-59828948 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 32-289 |
| Cow position: | chr6:6188182-6187931 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 40-303 |
| Cow position: | chr6:55205526-55205785 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 61-287 |
| Cow position: | chr6:35133059-35132832 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.