Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-151 |
| Cow position: | chr9:37141338-37141494 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 17, 140 |
| Conread position: | 1-152 |
| Cow position: | chr9:33598088-33598249 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-285 |
| Cow position: | chr9:9490898-9491187 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 2-148 |
| Cow position: | chr9:49983581-49983428 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 2-169 |
| Cow position: | chr9:52001113-52001291 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 135 |
| Conread position: | 2-255 |
| Cow position: | chr9:26403893-26404160 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 2-303 |
| Cow position: | chr9:26577748-26577446 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 179 |
| Conread position: | 3-148 |
| Cow position: | chr9:23541298-23541154 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 3-160 |
| Cow position: | chr9:48118589-48118427 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 3-173 |
| Cow position: | chr9:44709934-44710110 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 3-288 |
| Cow position: | chr9:54611126-54610830 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 178 |
| Conread position: | 4-130 |
| Cow position: | chr9:50139395-50139527 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 4-152 |
| Cow position: | chr9:41995820-41995982 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 4-165 |
| Cow position: | chr9:5532058-5532233 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 161 |
| Conread position: | 4-177 |
| Cow position: | chr9:41513734-41513912 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 4-181 |
| Cow position: | chr9:36999950-36999764 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 4-186 |
| Cow position: | chr9:40542229-40542418 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 4-197 |
| Cow position: | chr9:20321995-20321800 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 4-221 |
| Cow position: | chr9:15805814-15805584 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 4-228 |
| Cow position: | chr9:29330532-29330306 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 4-232 |
| Cow position: | chr9:39152568-39152339 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 4-236 |
| Cow position: | chr9:43871089-43871324 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 4-247 |
| Cow position: | chr9:48107008-48106754 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-250 |
| Cow position: | chr9:5433748-5433997 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 147 |
| Conread position: | 4-250 |
| Cow position: | chr9:35167282-35167539 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 4-251 |
| Cow position: | chr9:9443487-9443225 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-254 |
| Cow position: | chr9:61997489-61997227 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 160 |
| Conread position: | 4-267 |
| Cow position: | chr9:57951212-57950948 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 171 |
| Conread position: | 4-272 |
| Cow position: | chr9:26390878-26391152 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 4-272 |
| Cow position: | chr9:39428686-39428427 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 4-287 |
| Cow position: | chr9:47906170-47905879 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 4-287 |
| Cow position: | chr9:63745921-63746202 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 187 |
| Conread position: | 4-288 |
| Cow position: | chr9:42445869-42445571 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 139 |
| Conread position: | 4-289 |
| Cow position: | chr9:10308898-10308606 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 226 |
| Conread position: | 4-289 |
| Cow position: | chr9:20406744-20407038 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 159 |
| Conread position: | 4-289 |
| Cow position: | chr9:34919152-34918880 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 4-289 |
| Cow position: | chr9:44914978-44914711 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 149 |
| Conread position: | 4-289 |
| Cow position: | chr9:49279585-49279854 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 4-289 |
| Cow position: | chr9:50080936-50080643 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 280 |
| Conread position: | 4-290 |
| Cow position: | chr9:33823209-33823495 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-292 |
| Cow position: | chr9:5509832-5510130 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-292 |
| Cow position: | chr9:18252812-18252524 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 155 |
| Conread position: | 4-292 |
| Cow position: | chr9:35375538-35375827 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 146 |
| Conread position: | 4-292 |
| Cow position: | chr9:37069459-37069145 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 297 |
| Conread position: | 4-316 |
| Cow position: | chr9:42998357-42998030 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 5-229 |
| Cow position: | chr9:26434949-26434719 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-174 |
| Cow position: | chr9:25958531-25958703 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 7-181 |
| Cow position: | chr9:58133913-58133727 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 7-302 |
| Cow position: | chr9:6879880-6880186 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 50, 180 |
| Conread position: | 7-303 |
| Cow position: | chr9:37016997-37017301 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 277 |
| Conread position: | 7-311 |
| Cow position: | chr9:16300453-16300141 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 118 |
| Conread position: | 8-254 |
| Cow position: | chr9:17785347-17785089 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 197 |
| Conread position: | 9-176 |
| Cow position: | chr9:3070305-3070131 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 9-289 |
| Cow position: | chr9:3387806-3388094 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 126 |
| Conread position: | 9-289 |
| Cow position: | chr9:42497943-42498231 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 9-292 |
| Cow position: | chr9:41679861-41680137 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 10-214 |
| Cow position: | chr9:4962343-4962553 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 15-290 |
| Cow position: | chr9:5161942-5161669 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 17-289 |
| Cow position: | chr9:18380983-18381263 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 267 |
| Conread position: | 22-173 |
| Cow position: | chr9:5399848-5400004 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 131 |
| Conread position: | 22-292 |
| Cow position: | chr9:36445753-36446030 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 22-301 |
| Cow position: | chr9:34355800-34355516 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 25-289 |
| Cow position: | chr9:17411048-17410786 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 116 |
| Conread position: | 33-282 |
| Cow position: | chr9:19903205-19903448 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.