Cow genome map
| Conread name: | Ova1-OVRM10212D05 |
| Conread position: | 1-254 |
| Cow position: | chrX:36311527-36311285 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 1-289 |
| Cow position: | chrX:10302286-10301998 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 2-289 |
| Cow position: | chrX:15007202-15007498 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 283 |
| Conread position: | 3-289 |
| Cow position: | chrX:17271341-17271635 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 4-138 |
| Cow position: | chrX:12405438-12405575 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 4-143 |
| Cow position: | chrX:17908341-17908487 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 4-147 |
| Cow position: | chrX:32420165-32420011 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-163 |
| Cow position: | chrX:6488522-6488363 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 4-174 |
| Cow position: | chrX:13382275-13382090 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-175 |
| Cow position: | chrX:11856374-11856194 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 4-176 |
| Cow position: | chrX:1514461-1514640 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-176 |
| Cow position: | chrX:9855250-9855064 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-176 |
| Cow position: | chrX:9954091-9953905 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-176 |
| Cow position: | chrX:43049294-43049106 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-176 |
| Cow position: | chrX:44961694-44961511 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-177 |
| Cow position: | chrX:6690311-6690485 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 28, 70 |
| Conread position: | 4-177 |
| Cow position: | chrX:21672501-21672314 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-177 |
| Cow position: | chrX:30832902-30833075 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-186 |
| Cow position: | chrX:41167019-41167212 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 4-208 |
| Cow position: | chrX:20752200-20751993 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 4-250 |
| Cow position: | chrX:28845776-28845534 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 4-254 |
| Cow position: | chrX:28157443-28157173 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 4-266 |
| Cow position: | chrX:15545839-15545571 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 147 |
| Conread position: | 4-272 |
| Cow position: | chrX:6234507-6234766 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 12, 152 |
| Conread position: | 4-289 |
| Cow position: | chrX:21593233-21592939 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 198 |
| Conread position: | 4-289 |
| Cow position: | chrX:27516474-27516186 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 185 |
| Conread position: | 4-289 |
| Cow position: | chrX:34565226-34564953 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 4-289 |
| Cow position: | chrX:38967593-38967304 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 207 |
| Conread position: | 4-289 |
| Cow position: | chrX:41743857-41743566 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 155 |
| Conread position: | 4-292 |
| Cow position: | chrX:8797198-8796901 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 161 |
| Conread position: | 4-292 |
| Cow position: | chrX:28846936-28847226 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 196 |
| Conread position: | 4-303 |
| Cow position: | chrX:5118557-5118844 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 4-303 |
| Cow position: | chrX:17498030-17497735 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-303 |
| Cow position: | chrX:23583507-23583197 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 280 |
| Conread position: | 4-303 |
| Cow position: | chrX:35609934-35609623 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 281 |
| Conread position: | 4-303 |
| Cow position: | chrX:36249916-36250223 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 280 |
| Conread position: | 4-304 |
| Cow position: | chrX:26440833-26441141 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 284 |
| Conread position: | 5-177 |
| Cow position: | chrX:26875939-26876118 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 5-197 |
| Cow position: | chrX:7497186-7496988 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 5-236 |
| Cow position: | chrX:41238428-41238659 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 5-289 |
| Cow position: | chrX:42994559-42994267 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 6-181 |
| Cow position: | chrX:6643203-6643020 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 102 |
| Conread position: | 7-174 |
| Cow position: | chrX:30962931-30963106 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:34270344-34270141 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 7-221 |
| Cow position: | chrX:37836531-37836308 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 10, 193 |
| Conread position: | 7-272 |
| Cow position: | chrX:32128038-32128326 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 10, 153 |
| Conread position: | 7-292 |
| Cow position: | chrX:7695691-7695414 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 7-292 |
| Cow position: | chrX:42492571-42492880 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 7-293 |
| Cow position: | chrX:31442879-31443171 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 148 |
| Conread position: | 7-302 |
| Cow position: | chrX:4043912-4044219 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 9-174 |
| Cow position: | chrX:11589648-11589826 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 86 |
| Conread position: | 9-233 |
| Cow position: | chrX:25238114-25237885 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 9-289 |
| Cow position: | chrX:10437719-10437998 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 9, 171 |
| Conread position: | 9-289 |
| Cow position: | chrX:34441511-34441794 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 123 |
| Conread position: | 9-302 |
| Cow position: | chrX:1810220-1810520 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 9-302 |
| Cow position: | chrX:42247246-42247536 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 10-250 |
| Cow position: | chrX:19188877-19188626 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 17-301 |
| Cow position: | chrX:34754256-34754553 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 270 |
| Conread position: | 21-289 |
| Cow position: | chrX:7382251-7381977 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 213 |
| Conread position: | 22-289 |
| Cow position: | chrX:42507720-42507991 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 25-292 |
| Cow position: | chrX:33827095-33827381 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 31-289 |
| Cow position: | chrX:46771050-46771319 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 256 |
| Conread position: | 71-288 |
| Cow position: | chrX:8591413-8591192 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 212 |
Show alignments to all cow chromosomes.