Cow genome map
| Conread name: | Ova1-OVRM10218A03 |
| Conread position: | 205-594 |
| Cow position: | chr20:14831979-14831587 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 146 |
| Conread position: | 206-598 |
| Cow position: | chr20:26076735-26077112 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 208-600 |
| Cow position: | chr20:4895248-4894863 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 213-600 |
| Cow position: | chr20:10759837-10759441 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 284 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 32, 179 |
| Conread position: | 217-583 |
| Cow position: | chr20:18413513-18413872 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 217-591 |
| Cow position: | chr20:25329643-25330025 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 142 |
| Conread position: | 223-498 |
| Cow position: | chr20:30396067-30395798 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 41, 124 |
| Conread position: | 223-587 |
| Cow position: | chr20:15577231-15576866 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 224-593 |
| Cow position: | chr20:9412157-9412512 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 127 |
| Conread position: | 233-577 |
| Cow position: | chr20:14735329-14735687 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 156 |
| Conread position: | 247-584 |
| Cow position: | chr20:15761258-15760927 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 87 |
| Conread position: | 248-543 |
| Cow position: | chr20:10818536-10818250 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 256-521 |
| Cow position: | chr20:21345102-21345367 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 257-537 |
| Cow position: | chr20:23164171-23163904 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 261-472 |
| Cow position: | chr20:26316108-26315909 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 178, 10 |
| Conread position: | 261-498 |
| Cow position: | chr20:36181492-36181246 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 261-528 |
| Cow position: | chr20:4672636-4672907 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 261-528 |
| Cow position: | chr20:24534432-24534693 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 261-530 |
| Cow position: | chr20:868847-868594 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 261-571 |
| Cow position: | chr20:4945540-4945243 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 234, 81 |
| Conread position: | 261-576 |
| Cow position: | chr20:12996304-12996000 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 257, 81 |
| Conread position: | 261-577 |
| Cow position: | chr20:17251416-17251727 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 199, 69 |
| Conread position: | 261-578 |
| Cow position: | chr20:6240824-6240509 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 160, 70 |
| Conread position: | 261-583 |
| Cow position: | chr20:6096780-6096476 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 257, 63 |
| Conread position: | 261-584 |
| Cow position: | chr20:6571037-6571346 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 257, 81 |
| Conread position: | 261-586 |
| Cow position: | chr20:7806857-7806539 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 198, 70 |
| Conread position: | 261-587 |
| Cow position: | chr20:17903864-17904181 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 257, 58 |
| Conread position: | 261-588 |
| Cow position: | chr20:23065132-23064808 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 135, 73 |
| Conread position: | 261-588 |
| Cow position: | chr20:33363221-33363535 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 261-591 |
| Cow position: | chr20:8910610-8910942 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 71, 123 |
| Conread position: | 261-594 |
| Cow position: | chr20:9473908-9473587 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 261-596 |
| Cow position: | chr20:13465205-13465541 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 72, 120 |
| Conread position: | 261-598 |
| Cow position: | chr20:17845659-17845987 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 201, 29 |
| Conread position: | 261-600 |
| Cow position: | chr20:5576465-5576807 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 63 |
| Conread position: | 261-600 |
| Cow position: | chr20:18185284-18185598 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 261-600 |
| Cow position: | chr20:21324819-21325150 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 257, 165 |
| Conread position: | 262-498 |
| Cow position: | chr20:15078953-15078705 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 65 |
| Conread position: | 262-577 |
| Cow position: | chr20:3781725-3781415 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 256, 75 |
| Conread position: | 262-587 |
| Cow position: | chr20:39398186-39398507 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 252, 76 |
| Conread position: | 267-596 |
| Cow position: | chr20:39728162-39728479 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 232, 57 |
| Conread position: | 273-573 |
| Cow position: | chr20:38123602-38123897 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 149, 58 |
| Conread position: | 273-584 |
| Cow position: | chr20:3599675-3599373 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 298, 43 |
| Conread position: | 300-480 |
| Cow position: | chr20:11157277-11157091 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 300-573 |
| Cow position: | chr20:5998924-5998665 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 322-594 |
| Cow position: | chr20:40512008-40511730 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 326-590 |
| Cow position: | chr20:20360011-20359761 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 327-600 |
| Cow position: | chr20:15074075-15073802 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 331-578 |
| Cow position: | chr20:220381-220634 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 331-584 |
| Cow position: | chr20:14759901-14759643 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 119, 43 |
| Conread position: | 331-599 |
| Cow position: | chr20:4205726-4206000 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 333-596 |
| Cow position: | chr20:14679383-14679650 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 337-584 |
| Cow position: | chr20:17669952-17670201 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 6 |
| Conread position: | 338-586 |
| Cow position: | chr20:21714521-21714776 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 110 |
| Conread position: | 343-504 |
| Cow position: | chr20:10178336-10178170 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 343-512 |
| Cow position: | chr20:5702520-5702692 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 343-566 |
| Cow position: | chr20:24391762-24391980 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 345-573 |
| Cow position: | chr20:11923462-11923235 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 153, 11 |
| Conread position: | 345-593 |
| Cow position: | chr20:35843335-35843100 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 346-584 |
| Cow position: | chr20:26996312-26996553 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 346-585 |
| Cow position: | chr20:8703128-8702898 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 346-585 |
| Cow position: | chr20:28982476-28982719 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 109, 48 |
| Conread position: | 346-587 |
| Cow position: | chr20:10235630-10235873 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 346-593 |
| Cow position: | chr20:15582257-15582011 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 154, 15 |
| Conread position: | 346-595 |
| Cow position: | chr20:11341027-11340770 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 101, 31 |
| Conread position: | 347-586 |
| Cow position: | chr20:7659430-7659197 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 171, 20 |
| Conread position: | 348-586 |
| Cow position: | chr20:13955821-13956065 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 170, 28 |
| Conread position: | 350-562 |
| Cow position: | chr20:16291253-16291468 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 105, 183 |
| Conread position: | 354-573 |
| Cow position: | chr20:19265943-19266162 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 354-600 |
| Cow position: | chr20:14879572-14879820 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 93, 165 |
| Conread position: | 356-599 |
| Cow position: | chr20:32862204-32861965 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 357-573 |
| Cow position: | chr20:7600988-7600774 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 159, 18 |
| Conread position: | 358-573 |
| Cow position: | chr20:20983797-20984004 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 156, 14 |
| Conread position: | 364-584 |
| Cow position: | chr20:15566035-15565805 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 12 |
| Conread position: | 373-585 |
| Cow position: | chr20:11542479-11542263 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 78 |
| Conread position: | 377-594 |
| Cow position: | chr20:14471741-14471518 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 396-573 |
| Cow position: | chr20:42138197-42138381 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 409-597 |
| Cow position: | chr20:15312499-15312691 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 45, 174 |
| Conread position: | 414-577 |
| Cow position: | chr20:5636325-5636494 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 158 |
| Conread position: | 420-600 |
| Cow position: | chr20:24234011-24234190 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 52, 99 |
| Conread position: | 427-600 |
| Cow position: | chr20:8261765-8261943 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 124 |
| Conread position: | 439-587 |
| Cow position: | chr20:11355088-11355241 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 45 |
| Conread position: | 451-601 |
| Cow position: | chr20:23234917-23235070 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 138 |
Show alignments to all cow chromosomes.